Wall clock time and date at job start Mon Mar 30 2020 20:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47139 * 2 1 4 4 N 1.46507 * 109.47057 * 180.02562 * 3 2 1 5 5 N 1.39877 * 125.67318 * 269.69206 * 4 3 2 6 6 C 1.30322 * 109.23231 * 179.84336 * 5 4 3 7 7 C 1.41885 * 108.04306 * 0.41168 * 6 5 4 8 8 C 1.41594 * 126.55814 * 179.71906 * 7 6 5 9 9 H 1.07998 * 120.00106 * 223.32871 * 8 7 6 10 10 C 1.39699 * 120.00227 * 43.32317 * 8 7 6 11 11 N 1.31024 * 120.00496 * 200.39503 * 10 8 7 12 12 Si 1.86799 * 119.99727 * 20.39271 * 10 8 7 13 13 H 1.48500 * 109.47072 * 84.95048 * 12 10 8 14 14 H 1.48496 * 109.47336 * 204.95340 * 12 10 8 15 15 H 1.48507 * 109.47444 * 324.95156 * 12 10 8 16 16 C 1.34499 * 125.68049 * 89.99636 * 4 3 2 17 17 C 1.50700 * 126.40176 * 359.96685 * 16 4 3 18 18 C 1.53005 * 117.49600 * 195.07051 * 17 16 4 19 19 C 1.53000 * 117.50314 * 126.41238 * 17 16 4 20 20 H 1.08994 * 109.47343 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47073 * 59.99974 * 1 2 3 22 22 H 1.09000 * 109.47192 * 300.00555 * 1 2 3 23 23 H 1.08997 * 109.47055 * 120.00302 * 2 1 3 24 24 H 1.09004 * 109.47089 * 240.00190 * 2 1 3 25 25 H 1.08995 * 109.47441 * 299.99551 * 3 2 1 26 26 H 1.08997 * 109.47114 * 60.00497 * 3 2 1 27 27 H 1.07997 * 125.98065 * 180.11442 * 6 5 4 28 28 H 0.97001 * 120.00030 * 179.97438 * 11 10 8 29 29 H 1.09009 * 115.55330 * 340.73437 * 17 16 4 30 30 H 1.08991 * 117.50102 * 359.97438 * 18 17 16 31 31 H 1.09002 * 117.49498 * 145.01699 * 18 17 16 32 32 H 1.09001 * 117.50031 * 214.97463 * 19 17 16 33 33 H 1.09003 * 117.49799 * 359.96950 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 7 4.3213 1.4484 1.1353 6 6 5.5710 1.4431 0.7660 7 6 5.6101 1.4430 -0.6523 8 6 6.7703 1.4437 -1.4641 9 1 6.8223 2.0854 -2.3311 10 6 7.8477 0.6143 -1.1433 11 7 9.0410 0.8783 -1.6156 12 14 7.5871 -0.8710 -0.0409 13 1 7.1282 -2.0212 -0.8605 14 1 8.8651 -1.2199 0.6300 15 1 6.5608 -0.5528 0.9841 16 6 4.2891 1.4425 -1.0935 17 6 3.8249 1.4420 -2.5272 18 6 4.8542 1.0893 -3.6028 19 6 4.3731 2.5341 -3.4478 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 6.4272 1.4439 1.4242 28 1 9.7892 0.3026 -1.3926 29 1 2.7969 1.1170 -2.6884 30 1 5.8672 0.8581 -3.2736 31 1 4.5034 0.5326 -4.4719 32 1 3.7060 2.9274 -4.2149 33 1 5.0692 3.2534 -3.0163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261234205.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:39 Heat of formation + Delta-G solvation = 71.557811 kcal Electronic energy + Delta-G solvation = -15087.995676 eV Core-core repulsion = 12729.182547 eV Total energy + Delta-G solvation = -2358.813130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67171 -37.67971 -36.32813 -34.88047 -32.26471 -30.95290 -28.01136 -25.90851 -23.52175 -23.06384 -22.76984 -21.66981 -19.86115 -19.11730 -17.37497 -16.60976 -15.89857 -15.72881 -15.51804 -15.06619 -14.71394 -14.37117 -14.05141 -13.40565 -13.11288 -12.95964 -12.88207 -12.50546 -12.37041 -12.15635 -11.95438 -11.79367 -11.71632 -11.44406 -11.31432 -10.89957 -10.78458 -9.61130 -8.84218 -8.45414 -6.02983 1.12593 1.31419 1.43597 1.53185 1.98772 2.13673 2.36685 3.14636 3.37026 3.77958 3.94641 4.01763 4.20454 4.25759 4.29397 4.38554 4.43416 4.54886 4.64324 4.88969 4.92600 5.04493 5.12798 5.12993 5.29397 5.31670 5.38636 5.56166 5.60290 5.76884 5.96048 6.51593 6.61965 6.98398 7.14363 7.31620 8.64760 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.011060 C = 0.009141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.392753 B = 2531.073519 C = 3062.282250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.132 3.868 4 N -0.371 5.371 5 N -0.338 5.338 6 C -0.006 4.006 7 C -0.081 4.081 8 C -0.456 4.456 9 H 0.060 0.940 10 C 0.049 3.951 11 N -0.894 5.894 12 Si 0.924 3.076 13 H -0.279 1.279 14 H -0.282 1.282 15 H -0.241 1.241 16 C 0.012 3.988 17 C -0.078 4.078 18 C -0.183 4.183 19 C -0.160 4.160 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.162 0.838 28 H 0.275 0.725 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.995 -1.504 -0.670 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C 0.011 3.989 4 N -0.157 5.157 5 N -0.161 5.161 6 C -0.190 4.190 7 C -0.092 4.092 8 C -0.491 4.491 9 H 0.078 0.922 10 C -0.158 4.158 11 N -0.528 5.528 12 Si 0.748 3.252 13 H -0.205 1.205 14 H -0.208 1.208 15 H -0.164 1.164 16 C -0.113 4.113 17 C -0.098 4.098 18 C -0.221 4.221 19 C -0.197 4.197 20 H 0.084 0.916 21 H 0.091 0.909 22 H 0.083 0.917 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.124 0.876 26 H 0.109 0.891 27 H 0.179 0.821 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.677 -1.530 0.319 15.755 hybrid contribution 1.332 -0.625 -0.080 1.474 sum -14.345 -2.155 0.239 14.508 Atomic orbital electron populations 1.21648 0.91992 1.02926 1.03075 1.21888 0.98286 0.95411 1.01784 1.21862 0.73618 0.98736 1.04646 1.48026 1.06196 1.59035 1.02421 1.76495 1.02604 1.27318 1.09675 1.24066 0.94219 1.04271 0.96397 1.18063 0.92459 1.07380 0.91301 1.18222 0.96849 1.22783 1.11291 0.92223 1.26148 0.93666 0.99812 0.96159 1.69862 1.00430 1.37527 1.44941 0.86052 0.78369 0.80083 0.80661 1.20542 1.20775 1.16414 1.21023 0.90679 1.10571 0.89043 1.20113 0.98578 1.06120 0.84949 1.23387 1.01330 0.98297 0.99053 1.22885 1.03336 0.91811 1.01711 0.91563 0.90944 0.91706 0.93445 0.92334 0.87603 0.89061 0.82134 0.91490 0.85452 0.88185 0.87152 0.85935 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.91 71.98 0.71 -1.58 16 2 C -0.13 -3.37 6.26 30.59 0.19 -3.18 16 3 C 0.13 3.73 6.13 86.38 0.53 4.26 16 4 N -0.37 -15.03 3.58 -331.79 -1.19 -16.22 16 5 N -0.34 -15.63 12.47 -55.93 -0.70 -16.32 16 6 C -0.01 -0.28 9.01 85.82 0.77 0.50 16 7 C -0.08 -4.14 4.73 -21.30 -0.10 -4.24 16 8 C -0.46 -25.32 7.02 23.45 0.16 -25.16 16 9 H 0.06 3.55 6.17 -2.91 -0.02 3.53 16 10 C 0.05 2.70 5.47 85.17 0.47 3.17 16 11 N -0.89 -52.01 13.94 21.79 0.30 -51.71 16 12 Si 0.92 44.17 27.15 68.60 1.86 46.04 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.24 -11.43 5.02 99.48 0.50 -10.93 16 16 C 0.01 0.54 6.71 42.40 0.28 0.82 16 17 C -0.08 -2.77 5.78 -11.54 -0.07 -2.83 16 18 C -0.18 -6.79 9.61 30.62 0.29 -6.49 16 19 C -0.16 -5.42 9.82 30.62 0.30 -5.12 16 20 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 21 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.11 2.47 7.52 -2.39 -0.02 2.45 16 26 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.16 7.68 7.28 -2.91 -0.02 7.65 16 28 H 0.28 14.91 8.30 -92.71 -0.77 14.14 16 29 H 0.13 3.59 7.70 -2.38 -0.02 3.57 16 30 H 0.10 4.68 4.77 -2.39 -0.01 4.67 16 31 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 32 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.07 2.69 7.60 -2.39 -0.02 2.67 16 Total: -1.00 -65.37 271.26 4.71 -60.66 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.88 Total: 17.41 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 3.55 Total: -39.86 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -1.58 Total: -84.25 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.86 Total: 46.04 kcal Total: -65.37 4.71 -60.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234205.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.220 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds