Wall clock time and date at job start Mon Mar 30 2020 20:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08989 * 109.47074 * 2 1 4 4 C 1.50701 * 109.46915 * 120.00429 * 2 1 3 5 5 H 1.07993 * 120.00379 * 119.99867 * 4 2 1 6 6 C 1.37874 * 119.99748 * 299.99744 * 4 2 1 7 7 N 1.31518 * 120.00195 * 180.02562 * 6 4 2 8 8 Si 1.86808 * 120.00204 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46610 * 90.00236 * 8 6 4 10 10 H 1.48492 * 109.47056 * 210.00181 * 8 6 4 11 11 H 1.48494 * 109.46850 * 330.00285 * 8 6 4 12 12 C 1.50701 * 109.46808 * 239.99972 * 2 1 3 13 13 C 1.40051 * 126.10318 * 299.99958 * 12 2 1 14 14 N 1.31028 * 108.25601 * 179.97438 * 13 12 2 15 15 N 1.39466 * 108.18198 * 0.06454 * 14 13 12 16 16 C 1.34753 * 126.09685 * 120.00236 * 12 2 1 17 17 C 1.50864 * 127.76640 * 0.06899 * 16 12 2 18 18 C 1.53442 * 108.17836 * 164.23530 * 17 16 12 19 19 C 1.53149 * 109.18887 * 48.55606 * 18 17 16 20 20 C 1.46594 * 127.69356 * 180.27613 * 15 14 13 21 21 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47024 * 300.00276 * 1 2 3 23 23 H 1.09006 * 109.47063 * 59.99833 * 1 2 3 24 24 H 0.97000 * 120.00058 * 180.02562 * 7 6 4 25 25 H 1.08006 * 125.87439 * 359.96658 * 13 12 2 26 26 H 1.08999 * 109.72341 * 44.56673 * 17 16 12 27 27 H 1.09004 * 109.72146 * 283.90609 * 17 16 12 28 28 H 1.09006 * 109.51711 * 288.63900 * 18 17 16 29 29 H 1.08997 * 109.51766 * 168.46898 * 18 17 16 30 30 H 1.08995 * 109.45957 * 170.53992 * 19 18 17 31 31 H 1.08995 * 109.46068 * 50.58490 * 19 18 17 32 32 H 1.09002 * 109.58350 * 42.63161 * 20 15 14 33 33 H 1.09005 * 109.58272 * 282.35746 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6247 1.2790 2.6541 9 1 -0.8028 0.8725 2.6998 10 1 0.9759 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 6 2.0323 -0.7104 -1.2305 13 6 1.7739 -2.0424 -1.5776 14 7 2.3784 -2.2956 -2.7122 15 7 3.0395 -1.1376 -3.1209 16 6 2.8102 -0.1774 -2.1930 17 6 3.3549 1.2275 -2.2683 18 6 4.4833 1.2484 -3.3079 19 6 4.0016 0.5585 -4.5876 20 6 3.8425 -0.9439 -4.3320 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.9033 -0.5280 4.4375 25 1 1.1788 -2.7409 -1.0080 26 1 3.7462 1.5230 -1.2949 27 1 2.5633 1.9132 -2.5708 28 1 5.3514 0.7200 -2.9138 29 1 4.7542 2.2804 -3.5305 30 1 4.7310 0.7165 -5.3819 31 1 3.0417 0.9788 -4.8875 32 1 3.3410 -1.4083 -5.1811 33 1 4.8246 -1.3968 -4.1954 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261235283.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:44 Heat of formation + Delta-G solvation = 43.053912 kcal Electronic energy + Delta-G solvation = -15136.048090 eV Core-core repulsion = 12775.998939 eV Total energy + Delta-G solvation = -2360.049151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.35583 -37.46757 -36.31831 -33.87705 -32.33097 -31.09854 -28.44756 -26.99231 -25.05624 -23.55180 -22.98221 -20.78604 -19.55889 -18.56558 -17.27244 -16.55638 -16.36059 -15.48640 -15.32210 -14.98589 -14.80901 -14.66404 -14.49024 -13.98286 -13.43408 -13.00400 -12.91564 -12.66550 -12.43120 -12.12198 -11.87625 -11.78878 -11.69618 -11.41760 -11.17726 -10.99676 -10.67570 -9.96134 -8.98289 -8.21863 -6.24864 1.03533 1.36982 1.41228 1.53035 1.76623 2.02292 2.39256 3.13728 3.57313 3.78096 3.88849 3.92736 4.16483 4.39430 4.48186 4.55907 4.60488 4.65695 4.84335 4.88147 4.92663 4.99752 5.01527 5.09825 5.13904 5.29297 5.33022 5.37859 5.72029 5.80243 5.89219 6.30556 6.44676 6.81156 6.92170 7.39318 8.95437 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.038971 B = 0.008834 C = 0.008169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.301914 B = 3168.867333 C = 3426.889077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.083 3.917 3 H 0.035 0.965 4 C -0.501 4.501 5 H 0.023 0.977 6 C 0.008 3.992 7 N -0.956 5.956 8 Si 0.953 3.047 9 H -0.269 1.269 10 H -0.301 1.301 11 H -0.240 1.240 12 C -0.210 4.210 13 C 0.040 3.960 14 N -0.332 5.332 15 N -0.377 5.377 16 C 0.065 3.935 17 C -0.059 4.059 18 C -0.120 4.120 19 C -0.124 4.124 20 C 0.123 3.877 21 H 0.047 0.953 22 H 0.032 0.968 23 H 0.056 0.944 24 H 0.264 0.736 25 H 0.172 0.828 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 7.636 -17.197 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 H 0.053 0.947 4 C -0.540 4.540 5 H 0.041 0.959 6 C -0.188 4.188 7 N -0.597 5.597 8 Si 0.780 3.220 9 H -0.195 1.195 10 H -0.229 1.229 11 H -0.164 1.164 12 C -0.221 4.221 13 C -0.144 4.144 14 N -0.154 5.154 15 N -0.163 5.163 16 C -0.062 4.062 17 C -0.097 4.097 18 C -0.157 4.157 19 C -0.162 4.162 20 C 0.003 3.997 21 H 0.066 0.934 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.190 0.810 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.142 0.858 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.633 6.729 -18.083 19.473 hybrid contribution -0.625 0.303 1.643 1.784 sum 2.008 7.032 -16.440 17.993 Atomic orbital electron populations 1.22035 0.97432 1.00847 0.99137 1.17468 0.92338 0.94778 0.89156 0.94747 1.21254 1.30261 1.11928 0.90528 0.95852 1.25911 0.97453 1.00210 0.95246 1.70072 1.48195 1.42852 0.98557 0.85784 0.78889 0.79988 0.77344 1.19525 1.22922 1.16357 1.19949 1.07320 0.95275 0.99525 1.23774 0.99969 0.96783 0.93879 1.76965 1.15055 1.07469 1.15958 1.48800 1.40683 1.07165 1.19603 1.21233 0.99702 0.94293 0.90939 1.20551 0.99226 0.88375 1.01592 1.21684 0.96677 1.03276 0.94110 1.21948 1.04121 0.90912 0.99197 1.22118 0.94390 0.99760 0.83435 0.93400 0.94924 0.92486 0.92738 0.81045 0.90188 0.88300 0.92093 0.87508 0.85753 0.90531 0.88430 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 8.56 71.98 0.62 -5.26 16 2 C 0.08 3.92 2.23 -12.28 -0.03 3.89 16 3 H 0.03 1.59 6.43 -2.39 -0.02 1.58 16 4 C -0.50 -29.30 9.00 25.60 0.23 -29.07 16 5 H 0.02 1.54 7.97 -2.91 -0.02 1.52 16 6 C 0.01 0.45 5.45 84.65 0.46 0.91 16 7 N -0.96 -61.03 13.96 21.45 0.30 -60.73 16 8 Si 0.95 45.08 24.37 68.60 1.67 46.75 16 9 H -0.27 -12.19 6.87 99.48 0.68 -11.50 16 10 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 11 H -0.24 -10.24 6.53 99.48 0.65 -9.59 16 12 C -0.21 -9.24 4.73 -20.22 -0.10 -9.33 16 13 C 0.04 1.76 11.54 85.25 0.98 2.75 16 14 N -0.33 -13.64 12.61 -56.80 -0.72 -14.36 16 15 N -0.38 -13.05 4.04 -333.97 -1.35 -14.40 16 16 C 0.06 2.39 6.59 41.25 0.27 2.66 16 17 C -0.06 -1.60 5.69 30.05 0.17 -1.43 16 18 C -0.12 -2.21 5.97 30.79 0.18 -2.03 16 19 C -0.12 -1.90 5.93 30.72 0.18 -1.72 16 20 C 0.12 2.75 7.27 86.44 0.63 3.38 16 21 H 0.05 2.04 8.03 -2.39 -0.02 2.03 16 22 H 0.03 1.41 3.27 -2.39 -0.01 1.40 16 23 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 24 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 25 H 0.17 7.37 8.06 -2.91 -0.02 7.35 16 26 H 0.08 2.40 7.94 -2.39 -0.02 2.38 16 27 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.06 1.24 8.12 -2.38 -0.02 1.22 16 29 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -73.19 263.55 4.52 -68.67 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.01 Total: 9.33 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 3.61 Total: -35.26 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -1.77 Total: -89.49 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.67 Total: 46.75 kcal Total: -73.19 4.52 -68.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261235283.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.725 kcal (2) G-P(sol) polarization free energy of solvation -73.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds