Wall clock time and date at job start Mon Mar 30 2020 20:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.46824 * 2 1 4 4 C 1.46894 * 111.00250 * 71.65393 * 3 2 1 5 5 C 1.52996 * 109.47242 * 63.94018 * 4 3 2 6 6 C 1.38090 * 110.99903 * 195.60966 * 3 2 1 7 7 N 1.32265 * 119.90390 * 334.05877 * 6 3 2 8 8 C 1.31968 * 121.86553 * 180.02562 * 7 6 3 9 9 C 1.38691 * 121.44613 * 359.97438 * 8 7 6 10 10 C 1.37997 * 119.62782 * 0.02562 * 9 8 7 11 11 C 1.41008 * 118.28279 * 359.97438 * 10 9 8 12 12 C 1.41014 * 120.70441 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99848 * 156.04918 * 12 11 10 14 14 C 1.39947 * 120.00484 * 336.04490 * 12 11 10 15 15 N 1.30868 * 119.99600 * 342.97693 * 14 12 11 16 16 Si 1.86802 * 120.00175 * 162.97255 * 14 12 11 17 17 H 1.48501 * 109.46806 * 60.00202 * 16 14 12 18 18 H 1.48494 * 109.47068 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47162 * 300.00415 * 16 14 12 20 20 H 1.08998 * 109.47563 * 54.30062 * 1 2 3 21 21 H 1.08998 * 109.46715 * 174.30227 * 1 2 3 22 22 H 1.09000 * 109.46975 * 294.30350 * 1 2 3 23 23 H 1.08998 * 109.46973 * 240.00069 * 2 1 3 24 24 H 1.09001 * 109.47372 * 119.99608 * 2 1 3 25 25 H 1.09008 * 109.47552 * 183.93643 * 4 3 2 26 26 H 1.09002 * 109.47126 * 303.93568 * 4 3 2 27 27 H 1.08997 * 109.47205 * 179.16147 * 5 4 3 28 28 H 1.09011 * 109.46764 * 299.15624 * 5 4 3 29 29 H 1.08997 * 109.47273 * 59.15320 * 5 4 3 30 30 H 1.07999 * 119.27504 * 180.02562 * 8 7 6 31 31 H 1.08000 * 120.18515 * 180.02562 * 9 8 7 32 32 H 1.07998 * 120.86379 * 179.72417 * 10 9 8 33 33 H 0.97006 * 119.99887 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7881 2.0252 1.3017 5 6 2.6028 1.3037 2.3770 6 6 3.3552 1.4377 -0.3469 7 7 4.1349 0.3918 -0.1289 8 6 5.4162 0.4002 -0.4447 9 6 6.0115 1.5109 -1.0239 10 6 5.2540 2.6360 -1.2782 11 6 3.8865 2.6123 -0.9354 12 6 3.0652 3.7339 -1.1722 13 1 1.9981 3.6085 -1.2810 14 6 3.6330 5.0096 -1.2662 15 7 4.8429 5.2222 -0.8151 16 14 2.6638 6.4089 -2.0359 17 1 1.4141 6.6283 -1.2643 18 1 3.4824 7.6476 -2.0159 19 1 2.3246 6.0627 -3.4395 20 1 -0.3634 0.5996 -0.8345 21 1 -0.3633 -1.0226 -0.1020 22 1 -0.3633 0.4230 0.9366 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.0958 3.0699 1.2527 26 1 0.7283 1.9699 1.5504 27 1 2.4426 1.7880 3.3403 28 1 2.2847 0.2627 2.4364 29 1 3.6613 1.3461 2.1205 30 1 6.0142 -0.4775 -0.2485 31 1 7.0619 1.4954 -1.2744 32 1 5.6980 3.5136 -1.7245 33 1 5.2363 6.1065 -0.8799 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261236332.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:50 Heat of formation + Delta-G solvation = 32.072532 kcal Electronic energy + Delta-G solvation = -15340.368342 eV Core-core repulsion = 12979.843002 eV Total energy + Delta-G solvation = -2360.525340 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.08762 -36.30602 -34.03888 -30.87851 -30.45189 -30.07631 -27.45644 -25.29373 -23.18943 -21.83679 -21.04584 -19.17203 -17.26379 -16.01257 -15.52932 -15.10954 -14.57095 -14.03785 -13.67026 -12.92913 -12.56101 -12.39521 -12.22410 -11.80927 -11.62161 -11.48549 -11.28500 -11.11357 -10.94542 -10.85825 -10.56176 -10.37623 -10.09119 -9.72452 -9.30921 -8.42708 -7.99464 -7.92209 -7.08907 -6.74154 -4.36181 2.65326 2.94507 3.04536 3.08205 3.23860 3.89269 4.60837 4.84495 5.58142 5.61485 5.82470 5.90747 5.97519 6.04439 6.11023 6.20833 6.26792 6.36835 6.52947 6.56387 6.67555 6.80292 6.81989 6.95725 7.02843 7.11658 7.18138 7.63813 7.76508 7.96212 8.05579 8.33521 8.63429 8.73860 8.97872 9.65081 10.09459 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.012096 C = 0.009365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.309808 B = 2314.175823 C = 2989.275540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 N -0.455 5.455 4 C 0.058 3.942 5 C -0.179 4.179 6 C 0.171 3.829 7 N -0.494 5.494 8 C -0.032 4.032 9 C -0.159 4.159 10 C -0.138 4.138 11 C 0.082 3.918 12 C -0.426 4.426 13 H 0.092 0.908 14 C 0.071 3.929 15 N -0.792 5.792 16 Si 0.911 3.089 17 H -0.263 1.263 18 H -0.280 1.280 19 H -0.263 1.263 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 -2.087 1.402 4.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.067 4.067 3 N -0.175 5.175 4 C -0.069 4.069 5 C -0.237 4.237 6 C -0.062 4.062 7 N -0.206 5.206 8 C -0.190 4.190 9 C -0.180 4.180 10 C -0.165 4.165 11 C 0.076 3.924 12 C -0.455 4.455 13 H 0.110 0.890 14 C -0.148 4.148 15 N -0.417 5.417 16 Si 0.736 3.264 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.187 1.187 20 H 0.078 0.922 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.145 0.855 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.321 -2.365 1.464 5.139 hybrid contribution 0.660 0.988 -0.092 1.192 sum -3.661 -1.377 1.372 4.145 Atomic orbital electron populations 1.21824 0.96400 1.00479 1.01747 1.21837 0.93682 0.89874 1.01291 1.59448 1.14197 1.16405 1.27442 1.22091 0.98405 0.99809 0.86644 1.22329 1.02244 1.00288 0.98888 1.19419 0.88497 0.93055 1.05245 1.67022 1.05943 1.30404 1.17237 1.21395 0.90844 0.97859 1.08892 1.21553 0.98776 0.95283 1.02385 1.21606 0.94555 0.97457 1.02850 1.18025 0.92494 0.92288 0.89624 1.19522 0.96176 0.89936 1.39868 0.89005 1.26053 0.94984 1.00693 0.93032 1.69823 1.14826 1.24193 1.32868 0.86304 0.80291 0.79029 0.80805 1.18789 1.20476 1.18746 0.92203 0.93237 0.93335 0.91604 0.94119 0.89874 0.91800 0.93565 0.93159 0.92015 0.86766 0.88655 0.85515 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.84 37.16 0.37 -1.90 16 2 C 0.06 1.17 4.76 -3.82 -0.02 1.15 16 3 N -0.46 -9.93 3.91 -172.67 -0.68 -10.61 16 4 C 0.06 1.15 5.75 -3.83 -0.02 1.12 16 5 C -0.18 -3.41 9.24 37.16 0.34 -3.07 16 6 C 0.17 4.22 4.63 -155.03 -0.72 3.51 16 7 N -0.49 -12.01 8.32 -11.86 -0.10 -12.10 16 8 C -0.03 -0.74 11.17 -17.33 -0.19 -0.93 16 9 C -0.16 -3.74 10.08 -39.50 -0.40 -4.14 16 10 C -0.14 -3.56 8.81 -38.62 -0.34 -3.90 16 11 C 0.08 2.15 5.56 -106.47 -0.59 1.56 16 12 C -0.43 -10.90 7.81 -37.89 -0.30 -11.19 16 13 H 0.09 2.33 7.59 -52.49 -0.40 1.93 16 14 C 0.07 1.71 5.19 -17.32 -0.09 1.62 16 15 N -0.79 -19.73 10.91 55.55 0.61 -19.13 16 16 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 18 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.70 6.91 -51.93 -0.36 0.34 16 23 H 0.07 1.35 7.83 -51.93 -0.41 0.94 16 24 H 0.04 0.79 5.93 -51.93 -0.31 0.48 16 25 H 0.08 1.82 7.32 -51.92 -0.38 1.44 16 26 H 0.06 1.11 6.66 -51.93 -0.35 0.76 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.91 6.31 -51.92 -0.33 0.58 16 29 H 0.06 1.37 6.75 -51.93 -0.35 1.02 16 30 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 31 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.13 3.31 6.19 -52.49 -0.32 2.99 16 33 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 LS Contribution 267.22 15.07 4.03 4.03 Total: -1.00 -26.79 267.22 -7.58 -34.37 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.45 Total: 6.39 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -1.96 Total: -16.17 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -0.17 Total: -41.84 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.79 -7.58 -34.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261236332.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.441 kcal (2) G-P(sol) polarization free energy of solvation -26.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds