Wall clock time and date at job start Mon Mar 30 2020 20:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47369 * 2 1 4 4 N 1.46902 * 109.47222 * 120.00371 * 2 1 3 5 5 C 1.53005 * 109.46861 * 239.99928 * 2 1 3 6 6 C 1.50698 * 109.47135 * 175.00169 * 5 2 1 7 7 C 1.38322 * 119.96368 * 90.00341 * 6 5 2 8 8 C 1.38285 * 120.13604 * 179.97438 * 7 6 5 9 9 C 1.38116 * 120.06900 * 359.97438 * 8 7 6 10 10 C 1.38860 * 119.93364 * 0.02562 * 9 8 7 11 11 O 1.35746 * 120.07175 * 179.97438 * 10 9 8 12 12 C 1.34830 * 117.00311 * 354.47522 * 11 10 9 13 13 H 1.08004 * 119.99903 * 5.04810 * 12 11 10 14 14 C 1.38653 * 120.00578 * 185.05493 * 12 11 10 15 15 N 1.31563 * 119.99555 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00290 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47152 * 90.00095 * 16 14 12 18 18 H 1.48501 * 109.47333 * 209.99733 * 16 14 12 19 19 H 1.48494 * 109.47441 * 330.00169 * 16 14 12 20 20 C 1.38074 * 119.96376 * 269.72405 * 6 5 2 21 21 H 1.08999 * 109.47369 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47245 * 59.99904 * 1 2 3 23 23 H 1.09000 * 109.47138 * 300.00085 * 1 2 3 24 24 H 1.00892 * 110.99991 * 176.03996 * 4 2 1 25 25 H 1.00898 * 110.99831 * 299.99584 * 4 2 1 26 26 H 1.09001 * 109.47110 * 295.00630 * 5 2 1 27 27 H 1.09004 * 109.47193 * 55.00060 * 5 2 1 28 28 H 1.07996 * 119.93745 * 359.97242 * 7 6 5 29 29 H 1.07998 * 119.96095 * 179.97438 * 8 7 6 30 30 H 1.08003 * 120.03730 * 179.97438 * 9 8 7 31 31 H 0.97000 * 119.99624 * 179.97438 * 15 14 12 32 32 H 1.07999 * 120.03682 * 0.02562 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0399 -0.7213 -1.2493 6 6 3.5418 -0.6150 -1.3128 7 6 4.3288 -1.5828 -0.7149 8 6 5.7073 -1.4891 -0.7715 9 6 6.3025 -0.4285 -1.4260 10 6 5.5153 0.5447 -2.0272 11 8 6.0974 1.5885 -2.6708 12 6 7.4400 1.6841 -2.5927 13 1 8.0094 0.9060 -2.1060 14 6 8.0899 2.7814 -3.1369 15 7 7.3964 3.7290 -3.7301 16 14 9.9499 2.9141 -3.0280 17 1 10.5625 2.2731 -4.2193 18 1 10.3421 4.3455 -2.9795 19 1 10.4239 2.2290 -1.7987 20 6 4.1309 0.4452 -1.9727 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 3.0261 -0.7627 1.1908 25 1 1.6962 -0.2351 2.0385 26 1 1.7515 -1.7715 -1.2057 27 1 1.6053 -0.2618 -2.1370 28 1 3.8658 -2.4133 -0.2029 29 1 6.3190 -2.2461 -0.3034 30 1 7.3792 -0.3556 -1.4695 31 1 7.8510 4.4968 -4.1105 32 1 3.5159 1.1983 -2.4428 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037726505.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:57 Heat of formation + Delta-G solvation = -18.966178 kcal Electronic energy + Delta-G solvation = -14531.839793 eV Core-core repulsion = 12071.382587 eV Total energy + Delta-G solvation = -2460.457206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.15755 -37.28413 -35.47643 -32.28765 -31.08750 -29.04195 -29.03543 -26.14447 -25.11914 -21.71970 -21.07959 -19.98673 -17.60332 -16.93290 -15.66853 -15.52642 -14.96087 -14.48059 -14.34567 -13.86926 -13.58244 -13.10904 -12.56840 -12.39718 -11.92557 -11.80894 -11.64192 -11.57830 -11.21179 -11.12922 -10.68649 -10.58186 -10.52335 -10.33704 -9.32390 -8.84489 -8.56318 -8.02844 -7.21558 -6.44727 -4.04077 2.15522 2.38824 3.12518 3.13291 3.18125 3.96536 4.52565 4.68311 4.99737 5.09759 5.19149 5.32161 5.52152 5.58211 5.75100 5.81512 5.94974 5.99890 6.05949 6.13488 6.23963 6.31869 6.40628 6.71482 6.94002 7.08749 7.26394 7.36343 7.41589 7.44715 7.60172 7.84970 8.00511 9.01114 9.71816 10.73510 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046574 B = 0.006198 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.045582 B = 4516.626439 C = 4856.709240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.037 0.963 4 N -0.848 5.848 5 C -0.070 4.070 6 C -0.048 4.048 7 C -0.207 4.207 8 C -0.075 4.075 9 C -0.237 4.237 10 C 0.154 3.846 11 O -0.180 6.180 12 C -0.392 4.392 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.864 5.864 16 Si 0.941 3.059 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.191 4.191 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.349 0.651 25 H 0.333 0.667 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.125 0.875 31 H 0.270 0.730 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.141 -6.580 6.379 11.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 H 0.055 0.945 4 N -0.380 5.380 5 C -0.108 4.108 6 C -0.048 4.048 7 C -0.226 4.226 8 C -0.093 4.093 9 C -0.256 4.256 10 C 0.101 3.899 11 O -0.084 6.084 12 C -0.468 4.468 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.499 5.499 16 Si 0.766 3.234 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.210 4.210 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.163 0.837 25 H 0.145 0.855 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.143 0.857 31 H 0.079 0.921 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.598 -6.779 5.837 11.737 hybrid contribution 1.581 0.971 0.258 1.873 sum -6.017 -5.807 6.095 10.348 Atomic orbital electron populations 1.21820 0.94853 1.02184 1.01308 1.21273 0.94618 0.95466 0.90720 0.94489 1.58876 1.17515 1.57860 1.03743 1.20613 0.91915 1.01360 0.96901 1.19361 0.94365 0.94222 0.96890 1.20517 0.93289 1.01159 1.07601 1.20764 0.94534 0.96644 0.97393 1.21181 1.00482 0.97464 1.06487 1.19353 0.92084 0.88215 0.90297 1.83975 1.23000 1.39931 1.61448 1.21320 0.78821 1.07478 1.39212 0.89124 1.25284 1.00499 0.94542 0.96211 1.70044 1.36094 1.09208 1.34587 0.85715 0.80683 0.78030 0.79016 1.19876 1.20261 1.19224 1.20076 0.92076 1.01117 1.07724 0.92013 0.92305 0.93093 0.83653 0.85530 0.90659 0.91030 0.87207 0.87532 0.85719 0.92061 0.86812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.49 37.16 0.35 -1.21 16 2 C 0.09 1.20 3.42 -67.71 -0.23 0.97 16 3 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 4 N -0.85 -10.76 9.23 -4.66 -0.04 -10.80 16 5 C -0.07 -1.02 5.03 -27.88 -0.14 -1.16 16 6 C -0.05 -0.86 4.72 -104.65 -0.49 -1.36 16 7 C -0.21 -3.59 8.16 -39.53 -0.32 -3.91 16 8 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 9 C -0.24 -5.21 9.17 -39.40 -0.36 -5.58 16 10 C 0.15 3.77 6.65 -39.10 -0.26 3.51 16 11 O -0.18 -5.20 9.76 0.06 0.00 -5.20 16 12 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 13 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 14 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 15 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 16 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 C -0.19 -4.08 9.64 -39.39 -0.38 -4.46 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.35 4.81 6.87 -39.30 -0.27 4.54 16 25 H 0.33 3.61 9.04 -39.29 -0.36 3.25 16 26 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 27 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 28 H 0.11 1.68 8.04 -52.49 -0.42 1.26 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16 31 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 272.79 15.07 4.11 4.11 Total: -1.00 -30.12 272.79 -6.36 -36.48 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.13 Total: 9.34 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -2.04 Total: -24.78 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.72 Total: -35.57 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.00 Total: -5.20 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.12 -6.36 -36.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037726505.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.518 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds