Wall clock time and date at job start Mon Mar 30 2020 20:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46791 * 2 1 4 4 C 1.53001 * 109.47244 * 119.99877 * 2 1 3 5 5 H 1.08994 * 109.47183 * 300.03044 * 4 2 1 6 6 C 1.50692 * 109.46960 * 180.02562 * 4 2 1 7 7 H 1.08004 * 120.00050 * 334.62814 * 6 4 2 8 8 C 1.37870 * 120.00002 * 154.63418 * 6 4 2 9 9 N 1.31512 * 120.00237 * 7.39961 * 8 6 4 10 10 Si 1.86809 * 120.00096 * 187.12151 * 8 6 4 11 11 H 1.48504 * 109.46930 * 180.27526 * 10 8 6 12 12 H 1.48503 * 109.47100 * 300.27367 * 10 8 6 13 13 H 1.48497 * 109.46821 * 60.27471 * 10 8 6 14 14 C 1.50701 * 109.46892 * 60.02796 * 4 2 1 15 15 C 1.38095 * 119.58106 * 84.99919 * 14 4 2 16 16 C 1.38784 * 119.28322 * 179.97438 * 15 14 4 17 17 C 1.38417 * 118.49029 * 0.02562 * 16 15 14 18 18 C 1.38877 * 119.11391 * 359.97438 * 17 16 15 19 19 O 1.35674 * 119.68563 * 179.97438 * 18 17 16 20 20 N 1.31932 * 119.58290 * 264.72411 * 14 4 2 21 21 H 1.08999 * 109.46523 * 299.99663 * 1 2 3 22 22 H 1.08997 * 109.47347 * 59.99926 * 1 2 3 23 23 H 1.09001 * 109.46958 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46523 * 240.00337 * 2 1 3 25 25 H 1.08998 * 109.46927 * 185.40426 * 3 2 1 26 26 H 1.09001 * 109.46777 * 305.39937 * 3 2 1 27 27 H 1.08992 * 109.47175 * 65.40188 * 3 2 1 28 28 H 0.97004 * 120.00060 * 354.89828 * 9 8 6 29 29 H 1.07992 * 120.35608 * 359.97438 * 15 14 4 30 30 H 1.08007 * 120.75542 * 180.02562 * 16 15 14 31 31 H 1.07997 * 120.44586 * 179.97438 * 17 16 15 32 32 H 0.96707 * 113.99834 * 90.00679 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6764 -0.2077 2.1392 6 6 3.5470 -0.7206 1.2495 7 1 4.0872 -0.6448 0.3173 8 6 4.2362 -0.8170 2.4397 9 7 3.5868 -1.0552 3.5582 10 14 6.0934 -0.6169 2.4625 11 1 6.5907 -0.7700 3.8534 12 1 6.7136 -1.6530 1.5981 13 1 6.4522 0.7315 1.9541 14 6 1.5383 -2.1422 1.2489 15 6 2.2391 -3.1125 0.5600 16 6 1.7717 -4.4193 0.5643 17 6 0.6115 -4.7032 1.2637 18 6 -0.0416 -3.6773 1.9341 19 8 -1.1800 -3.9425 2.6229 20 7 0.4381 -2.4446 1.9112 21 1 -0.3632 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1257 1.4441 -0.0968 26 1 1.5998 1.9835 -0.8377 27 1 1.7578 1.9277 0.9343 28 1 2.6174 -1.0896 3.5583 29 1 3.1411 -2.8571 0.0238 30 1 2.3013 -5.1970 0.0339 31 1 0.2194 -5.7092 1.2878 32 1 -1.0326 -4.1884 3.5465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227407.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:44 Heat of formation + Delta-G solvation = -50.538117 kcal Electronic energy + Delta-G solvation = -15305.290574 eV Core-core repulsion = 12843.464305 eV Total energy + Delta-G solvation = -2461.826268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.35563 -38.61861 -37.02878 -34.48991 -33.27640 -31.38241 -28.56480 -27.78367 -25.49095 -24.00845 -23.15701 -20.96983 -19.64659 -18.46846 -17.51003 -17.09816 -16.38441 -15.81282 -15.61035 -15.19238 -14.90113 -14.43811 -13.88596 -13.58960 -13.29490 -12.93838 -12.91759 -12.64402 -12.58920 -12.41451 -11.96901 -11.86503 -11.73137 -11.30644 -10.71359 -10.62905 -10.47453 -10.10454 -9.47450 -8.54764 -6.26736 0.25788 0.46741 1.57129 1.64158 1.81799 2.59323 2.69020 3.03834 3.26347 3.88542 4.10843 4.17642 4.26231 4.32694 4.39702 4.44775 4.76291 4.80513 4.87824 4.94726 5.02897 5.13529 5.17102 5.28362 5.34613 5.45728 5.55232 5.69753 5.85132 6.10885 6.27911 6.65711 6.69135 7.25570 7.54688 8.83550 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.011624 C = 0.009251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.527557 B = 2408.289076 C = 3026.014228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.121 4.121 4 C 0.075 3.925 5 H 0.007 0.993 6 C -0.580 4.580 7 H 0.060 0.940 8 C -0.026 4.026 9 N -0.937 5.937 10 Si 1.107 2.893 11 H -0.295 1.295 12 H -0.267 1.267 13 H -0.269 1.269 14 C 0.174 3.826 15 C -0.177 4.177 16 C -0.066 4.066 17 C -0.206 4.206 18 C 0.278 3.722 19 O -0.494 6.494 20 N -0.545 5.545 21 H 0.038 0.962 22 H 0.068 0.932 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.256 0.744 29 H 0.136 0.864 30 H 0.170 0.830 31 H 0.164 0.836 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 -4.780 -6.498 8.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.094 4.094 3 C -0.178 4.178 4 C 0.055 3.945 5 H 0.025 0.975 6 C -0.618 4.618 7 H 0.078 0.922 8 C -0.225 4.225 9 N -0.574 5.574 10 Si 0.930 3.070 11 H -0.221 1.221 12 H -0.192 1.192 13 H -0.194 1.194 14 C 0.038 3.962 15 C -0.197 4.197 16 C -0.091 4.091 17 C -0.227 4.227 18 C 0.100 3.900 19 O -0.303 6.303 20 N -0.265 5.265 21 H 0.057 0.943 22 H 0.087 0.913 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.154 0.846 30 H 0.187 0.813 31 H 0.182 0.818 32 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -2.187 -4.118 -5.567 7.262 hybrid contribution -0.993 -0.633 -0.348 1.228 sum -3.180 -4.751 -5.915 8.226 Atomic orbital electron populations 1.21750 0.95881 1.00233 1.01022 1.20987 0.94399 0.96891 0.97076 1.21579 1.01236 0.94704 1.00317 1.18032 0.95209 0.86707 0.94540 0.97457 1.22006 0.90620 1.54020 0.95153 0.92169 1.27114 1.10433 0.92695 0.92278 1.70873 1.09793 1.46376 1.30378 0.83059 0.70179 0.77974 0.75800 1.22082 1.19229 1.19401 1.22141 0.86555 0.99188 0.88359 1.22102 1.01686 0.93915 1.01996 1.21871 0.94587 0.96538 0.96091 1.22176 0.97068 1.00597 1.02812 1.19610 0.86837 0.88663 0.94890 1.84673 1.26873 1.89707 1.29062 1.67078 1.14584 1.22633 1.22186 0.94260 0.91260 0.94976 0.92237 0.92748 0.91559 0.94830 0.93310 0.84649 0.81281 0.81806 0.72954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.87 71.99 0.64 -4.38 16 2 C -0.07 -3.08 2.48 -10.79 -0.03 -3.10 16 3 C -0.12 -4.57 8.84 71.98 0.64 -3.93 16 4 C 0.07 3.70 1.32 -12.29 -0.02 3.69 16 5 H 0.01 0.42 7.00 -2.39 -0.02 0.40 16 6 C -0.58 -30.03 5.69 25.60 0.15 -29.88 16 7 H 0.06 3.00 7.76 -2.91 -0.02 2.98 16 8 C -0.03 -1.43 5.45 84.65 0.46 -0.97 16 9 N -0.94 -56.76 13.63 21.44 0.29 -56.46 16 10 Si 1.11 48.18 29.91 68.60 2.05 50.23 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 13 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 14 C 0.17 8.22 4.54 42.51 0.19 8.41 16 15 C -0.18 -7.38 9.17 22.37 0.21 -7.18 16 16 C -0.07 -2.18 10.17 22.44 0.23 -1.95 16 17 C -0.21 -6.72 10.04 22.47 0.23 -6.50 16 18 C 0.28 10.92 7.74 84.78 0.66 11.57 16 19 O -0.49 -16.47 13.56 -89.92 -1.22 -17.69 16 20 N -0.54 -25.42 9.60 -296.96 -2.85 -28.27 16 21 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.03 1.30 6.76 -2.39 -0.02 1.28 16 24 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.05 2.12 7.38 -2.39 -0.02 2.11 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.26 16.17 6.62 -92.71 -0.61 15.56 16 29 H 0.14 5.60 7.18 -2.91 -0.02 5.58 16 30 H 0.17 4.07 8.06 -2.91 -0.02 4.05 16 31 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 32 H 0.41 9.77 9.06 -74.05 -0.67 9.10 16 Total: -1.00 -66.90 270.92 2.22 -64.68 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.60 Total: 21.74 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 3.35 Total: -34.22 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -2.56 Total: -84.74 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -1.22 Total: -17.69 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.05 Total: 50.23 kcal Total: -66.90 2.22 -64.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227407.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.144 kcal (2) G-P(sol) polarization free energy of solvation -66.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds