Wall clock time and date at job start Mon Mar 30 2020 20:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 115.54719 * 2 1 4 4 C 1.53073 * 117.53490 * 214.28965 * 2 1 3 5 5 C 1.52997 * 117.50319 * 145.67240 * 2 1 3 6 6 H 1.08996 * 117.49979 * 215.02800 * 5 2 1 7 7 C 1.50696 * 117.49750 * 0.02562 * 5 2 1 8 8 C 1.34521 * 125.78847 * 239.91157 * 7 5 2 9 9 C 1.41383 * 106.84046 * 179.79304 * 8 7 5 10 10 C 1.34519 * 106.84211 * 0.37064 * 9 8 7 11 11 C 1.50699 * 125.79388 * 179.88608 * 10 9 8 12 12 N 1.46499 * 109.46700 * 89.69322 * 11 10 9 13 13 C 1.36935 * 119.99926 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99877 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00369 * 179.73019 * 13 12 11 16 16 N 1.31614 * 120.00468 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99699 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47209 * 90.00536 * 17 15 13 19 19 H 1.48506 * 109.47294 * 210.00384 * 17 15 13 20 20 H 1.48501 * 109.47275 * 330.00287 * 17 15 13 21 21 O 1.34300 * 125.79208 * 59.93778 * 7 5 2 22 22 H 1.08995 * 109.46859 * 274.32421 * 1 2 3 23 23 H 1.08993 * 109.47480 * 34.32821 * 1 2 3 24 24 H 1.09004 * 109.46576 * 154.33212 * 1 2 3 25 25 H 1.09003 * 117.49716 * 145.04171 * 4 2 1 26 26 H 1.09001 * 117.51382 * 0.02562 * 4 2 1 27 27 H 1.07994 * 126.58171 * 0.04703 * 8 7 5 28 28 H 1.07997 * 126.58152 * 180.23734 * 9 8 7 29 29 H 1.08998 * 109.46743 * 329.69798 * 11 10 9 30 30 H 1.08994 * 109.47542 * 209.69657 * 11 10 9 31 31 H 0.97005 * 120.00261 * 0.02562 * 12 11 10 32 32 H 0.97000 * 120.00663 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2376 -1.1214 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 3.1712 -0.8745 1.2691 7 6 1.3722 -2.1405 1.4609 8 6 1.3687 -2.3996 2.7809 9 6 0.4099 -3.4161 2.9963 10 6 -0.1093 -3.7231 1.7940 11 6 -1.1711 -4.7597 1.5311 12 7 -2.4945 -4.1394 1.6315 13 6 -3.6206 -4.8923 1.4308 14 1 -3.5330 -5.9433 1.1982 15 6 -4.8747 -4.3059 1.5314 16 7 -5.9570 -5.0296 1.3391 17 14 -5.0263 -2.4897 1.9413 18 1 -5.0306 -1.6974 0.6852 19 1 -6.2925 -2.2529 2.6802 20 1 -3.8763 -2.0747 2.7842 21 8 0.4750 -2.9451 0.8682 22 1 -0.3633 0.0775 1.0247 23 1 -0.3634 0.8486 -0.5795 24 1 -0.3632 -0.9263 -0.4452 25 1 3.1730 -0.8754 -1.2675 26 1 1.6132 -1.8593 -1.2684 27 1 1.9782 -1.9201 3.5326 28 1 0.1466 -3.8621 3.9439 29 1 -1.0880 -5.5595 2.2670 30 1 -1.0376 -5.1711 0.5307 31 1 -2.5731 -3.1953 1.8401 32 1 -6.8334 -4.6199 1.4097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379563489.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:07 Heat of formation + Delta-G solvation = 48.811956 kcal Electronic energy + Delta-G solvation = -14707.913120 eV Core-core repulsion = 12250.394994 eV Total energy + Delta-G solvation = -2457.518126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.33424 -37.80008 -34.99342 -32.71578 -31.67408 -29.63193 -28.42469 -25.85306 -22.76435 -21.70974 -21.63341 -20.56859 -19.52266 -17.90779 -16.27190 -15.96026 -15.44992 -14.48896 -14.42934 -13.59951 -13.16650 -13.03580 -12.96231 -12.65441 -12.45014 -12.38432 -11.84459 -11.68745 -11.47857 -11.12442 -10.87743 -10.60904 -10.19392 -10.11051 -9.63583 -9.53775 -8.96758 -7.94748 -7.30971 -5.80346 -3.17545 1.91409 2.84909 3.12882 3.37797 3.42417 3.44827 3.76337 4.45514 4.57513 4.59717 4.78733 5.09385 5.23712 5.32920 5.38226 5.50907 5.58410 5.62940 5.68634 5.81480 5.90227 6.01084 6.06467 6.12478 6.24092 6.34128 6.44767 6.49649 6.83807 7.54176 7.92428 8.37651 9.14845 9.87160 10.06567 11.37402 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032560 B = 0.007683 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.755407 B = 3643.647719 C = 4052.109096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.139 4.139 3 H 0.110 0.890 4 C -0.168 4.168 5 C -0.079 4.079 6 H 0.130 0.870 7 C 0.010 3.990 8 C -0.206 4.206 9 C -0.206 4.206 10 C -0.002 4.002 11 C 0.232 3.768 12 N -0.751 5.751 13 C -0.249 4.249 14 H 0.094 0.906 15 C 0.010 3.990 16 N -0.931 5.931 17 Si 0.882 3.118 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.276 1.276 21 O -0.167 6.167 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.365 0.635 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.327 9.139 -0.564 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 H 0.128 0.872 4 C -0.205 4.205 5 C -0.097 4.097 6 H 0.148 0.852 7 C -0.040 4.040 8 C -0.225 4.225 9 C -0.226 4.226 10 C -0.053 4.053 11 C 0.106 3.894 12 N -0.398 5.398 13 C -0.379 4.379 14 H 0.111 0.889 15 C -0.187 4.187 16 N -0.578 5.578 17 Si 0.712 3.288 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.202 1.202 21 O -0.064 6.064 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.198 0.802 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.094 8.918 -0.928 19.303 hybrid contribution -0.152 1.301 0.628 1.452 sum 16.942 10.219 -0.300 19.788 Atomic orbital electron populations 1.21401 0.92173 1.02606 1.02332 1.22505 0.96132 0.93930 1.03120 0.87192 1.23205 1.02859 1.01765 0.92699 1.20541 0.98607 0.96554 0.94002 0.85216 1.21184 0.95046 0.96150 0.91659 1.21409 1.03715 1.02218 0.95200 1.21584 1.00805 1.01683 0.98532 1.23032 0.98600 0.96653 0.86979 1.19160 0.80529 0.89377 1.00359 1.42713 1.00733 1.09179 1.87133 1.19029 0.83110 0.94622 1.41110 0.88852 1.24634 0.95159 0.97476 1.01402 1.69692 0.97146 1.35093 1.55873 0.86578 0.77091 0.86754 0.78399 1.20903 1.21526 1.20208 1.83966 1.43413 1.41115 1.37871 0.92103 0.92045 0.91656 0.88211 0.87933 0.83976 0.83526 0.92157 0.93740 0.80245 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.16 37.16 0.34 -1.33 16 2 C -0.14 -1.51 6.41 -90.58 -0.58 -2.09 16 3 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.17 -1.79 9.82 -26.69 -0.26 -2.06 16 5 C -0.08 -0.91 6.23 -91.78 -0.57 -1.49 16 6 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 7 C 0.01 0.15 5.89 -35.62 -0.21 -0.06 16 8 C -0.21 -3.08 10.81 -39.70 -0.43 -3.51 16 9 C -0.21 -3.46 10.81 -39.70 -0.43 -3.89 16 10 C 0.00 -0.04 6.69 -35.62 -0.24 -0.28 16 11 C 0.23 4.74 6.79 -5.19 -0.04 4.71 16 12 N -0.75 -18.60 5.40 -61.09 -0.33 -18.93 16 13 C -0.25 -7.16 10.47 -15.06 -0.16 -7.32 16 14 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 15 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 16 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 17 Si 0.88 22.58 27.73 -169.99 -4.71 17.86 16 18 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 20 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 21 O -0.17 -2.99 9.63 5.70 0.05 -2.93 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.98 7.27 -51.93 -0.38 0.61 16 25 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.10 1.26 7.88 -51.93 -0.41 0.85 16 27 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.15 2.26 8.06 -52.49 -0.42 1.83 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.36 9.04 5.52 -40.82 -0.23 8.82 16 32 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 276.19 15.07 4.16 4.16 Total: -1.00 -31.72 276.19 -7.13 -38.85 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.41 Total: 6.68 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -2.67 Total: -17.12 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.45 Total: -47.51 kcal Atomic # 8 Polarization: -2.99 SS G_CDS: 0.05 Total: -2.93 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.86 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.72 -7.13 -38.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379563489.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.664 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds