Wall clock time and date at job start Mon Mar 30 2020 20:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 115.56946 * 2 1 4 4 C 1.53006 * 117.49853 * 145.69685 * 2 1 3 5 5 C 1.53005 * 60.00172 * 107.48130 * 4 2 1 6 6 H 1.08998 * 117.49237 * 107.51146 * 5 4 2 7 7 C 1.50694 * 117.49938 * 252.50693 * 5 4 2 8 8 C 1.34515 * 125.78835 * 188.60681 * 7 5 4 9 9 C 1.41385 * 106.84000 * 179.97438 * 8 7 5 10 10 C 1.34507 * 106.84104 * 0.02562 * 9 8 7 11 11 C 1.50698 * 125.78843 * 180.02562 * 10 9 8 12 12 N 1.46509 * 109.47066 * 89.97318 * 11 10 9 13 13 C 1.36941 * 119.99766 * 179.97438 * 12 11 10 14 14 H 1.07992 * 119.99916 * 0.02562 * 13 12 11 15 15 C 1.38809 * 119.99516 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00091 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99886 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47123 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46950 * 120.00402 * 17 15 13 20 20 H 1.48500 * 109.47458 * 240.00282 * 17 15 13 21 21 O 1.34300 * 108.42410 * 359.97438 * 10 9 8 22 22 H 1.09004 * 109.47175 * 205.69075 * 1 2 3 23 23 H 1.09001 * 109.46632 * 325.68574 * 1 2 3 24 24 H 1.08994 * 109.47209 * 85.68295 * 1 2 3 25 25 H 1.09004 * 117.49354 * 359.97438 * 4 2 1 26 26 H 1.08991 * 117.51636 * 214.96618 * 4 2 1 27 27 H 1.08001 * 126.57671 * 0.25194 * 8 7 5 28 28 H 1.07995 * 126.57686 * 179.97438 * 9 8 7 29 29 H 1.09000 * 109.47451 * 209.97399 * 11 10 9 30 30 H 1.08996 * 109.47366 * 329.97629 * 11 10 9 31 31 H 0.97002 * 119.99615 * 0.02562 * 12 11 10 32 32 H 0.97007 * 119.99749 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2365 -1.1211 0.7649 5 6 2.2363 -1.1211 -0.7652 6 1 3.1715 -0.8756 -1.2684 7 6 1.3719 -2.1406 -1.4610 8 6 1.3672 -2.3984 -2.7812 9 6 0.4126 -3.4190 -2.9959 10 6 -0.1094 -3.7234 -1.7942 11 6 -1.1697 -4.7614 -1.5313 12 7 -0.5326 -6.0531 -1.2627 13 6 -1.3023 -7.1535 -0.9941 14 1 -2.3789 -7.0691 -0.9807 15 6 -0.6987 -8.3774 -0.7402 16 7 0.6133 -8.4802 -0.7571 17 14 -1.7486 -9.8785 -0.3745 18 1 -3.1841 -9.5006 -0.4157 19 1 -1.4839 -10.9274 -1.3919 20 1 -1.4124 -10.4012 0.9742 21 8 0.4755 -2.9462 -0.8681 22 1 -0.3634 -0.9261 0.4455 23 1 -0.3632 0.8488 0.5793 24 1 -0.3633 0.0774 -1.0247 25 1 1.6111 -1.8584 1.2684 26 1 3.1716 -0.8758 1.2681 27 1 1.9789 -1.9208 -3.5323 28 1 0.1519 -3.8674 -3.9431 29 1 -1.7642 -4.4630 -0.6678 30 1 -1.8161 -4.8498 -2.4044 31 1 0.4344 -6.1287 -1.2744 32 1 1.0351 -9.3355 -0.5792 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379563490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:10 Heat of formation + Delta-G solvation = 25.963368 kcal Electronic energy + Delta-G solvation = -14519.223745 eV Core-core repulsion = 12060.714830 eV Total energy + Delta-G solvation = -2458.508915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.55542 -38.68298 -36.72998 -34.05849 -33.43220 -30.83181 -29.40733 -27.27544 -24.87525 -23.02948 -22.80295 -21.59716 -20.64499 -19.43824 -17.52150 -17.11255 -16.74296 -16.30813 -15.73503 -15.09979 -15.03642 -14.24768 -14.14484 -14.01377 -13.71297 -13.34443 -13.19036 -12.86345 -12.75670 -12.64809 -12.36307 -12.09248 -11.91555 -11.49919 -11.06348 -10.97648 -10.73847 -9.14325 -9.12719 -7.99493 -5.32510 0.70547 1.47041 1.49013 1.59207 1.64614 1.96186 2.55021 2.90505 3.34300 3.50104 3.74978 3.87290 4.01741 4.08201 4.17791 4.30441 4.43825 4.60583 4.69754 4.76642 4.86001 4.86455 4.90693 5.04087 5.13053 5.17206 5.20631 5.42176 5.44194 5.65667 6.19209 6.30162 7.26159 7.93320 8.20932 9.24346 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045602 B = 0.005757 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.858369 B = 4862.399298 C = 4959.877420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 H 0.145 0.855 4 C -0.173 4.173 5 C -0.093 4.093 6 H 0.159 0.841 7 C 0.011 3.989 8 C -0.214 4.214 9 C -0.202 4.202 10 C -0.033 4.033 11 C 0.230 3.770 12 N -0.742 5.742 13 C -0.252 4.252 14 H 0.085 0.915 15 C -0.075 4.075 16 N -0.972 5.972 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.290 1.290 20 H -0.292 1.292 21 O -0.187 6.187 22 H 0.035 0.965 23 H 0.081 0.919 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.126 0.874 27 H 0.173 0.827 28 H 0.155 0.845 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.373 0.627 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.086 18.142 -0.898 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 H 0.163 0.837 4 C -0.210 4.210 5 C -0.111 4.111 6 H 0.177 0.823 7 C -0.039 4.039 8 C -0.233 4.233 9 C -0.222 4.222 10 C -0.082 4.082 11 C 0.104 3.896 12 N -0.386 5.386 13 C -0.383 4.383 14 H 0.103 0.897 15 C -0.267 4.267 16 N -0.622 5.622 17 Si 0.811 3.189 18 H -0.185 1.185 19 H -0.217 1.217 20 H -0.219 1.219 21 O -0.084 6.084 22 H 0.054 0.946 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.144 0.856 27 H 0.191 0.809 28 H 0.173 0.827 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.204 0.796 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.820 18.055 -0.564 18.155 hybrid contribution -0.004 -1.310 -0.036 1.310 sum 1.816 16.745 -0.599 16.854 Atomic orbital electron populations 1.21393 0.93470 1.01819 1.01756 1.22629 0.95248 0.94872 1.01356 0.83747 1.23234 1.03877 1.01532 0.92391 1.20884 0.99368 0.96336 0.94498 0.82338 1.21996 0.94044 0.95681 0.92191 1.21744 1.03682 1.01872 0.95956 1.21816 1.00629 1.01309 0.98433 1.22678 1.00922 0.96996 0.87645 1.19192 0.89906 0.81025 0.99471 1.42596 1.05928 1.04530 1.85502 1.19739 0.91309 0.87955 1.39325 0.89710 1.25708 0.96967 1.01065 1.02940 1.69870 1.09607 1.25184 1.57535 0.84943 0.78360 0.78777 0.76832 1.18550 1.21730 1.21936 1.83940 1.44380 1.41734 1.38377 0.94600 0.89993 0.92826 0.90761 0.85558 0.80904 0.82746 0.94706 0.91557 0.79573 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.15 71.98 0.66 -2.08 16 2 C -0.12 -2.29 6.41 -10.79 -0.07 -2.36 16 3 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.17 -3.75 9.81 30.60 0.30 -3.45 16 5 C -0.09 -2.10 6.24 -11.54 -0.07 -2.17 16 6 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 7 C 0.01 0.35 5.89 24.83 0.15 0.49 16 8 C -0.21 -6.52 10.81 22.19 0.24 -6.28 16 9 C -0.20 -7.17 10.81 22.19 0.24 -6.93 16 10 C -0.03 -1.31 6.69 24.83 0.17 -1.15 16 11 C 0.23 10.10 6.79 85.63 0.58 10.68 16 12 N -0.74 -40.42 5.60 -347.17 -1.94 -42.36 16 13 C -0.25 -14.51 9.99 84.03 0.84 -13.67 16 14 H 0.09 4.58 7.83 -2.91 -0.02 4.55 16 15 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 16 N -0.97 -61.46 13.06 21.65 0.28 -61.18 16 17 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 18 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 O -0.19 -7.28 9.63 -2.50 -0.02 -7.30 16 22 H 0.03 0.96 7.27 -2.38 -0.02 0.94 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 2.05 7.87 -2.39 -0.02 2.03 16 26 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.17 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.15 5.03 8.06 -2.91 -0.02 5.01 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.37 22.08 7.66 -92.71 -0.71 21.37 16 32 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -68.59 279.30 4.24 -64.35 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.40 Total: 28.66 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 3.50 Total: -30.84 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -1.66 Total: -103.55 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.02 Total: -7.30 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -68.59 4.24 -64.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379563490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.316 kcal (2) G-P(sol) polarization free energy of solvation -68.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds