Wall clock time and date at job start Mon Mar 30 2020 20:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46553 * 2 1 4 4 C 1.36398 * 119.97737 * 264.99736 * 3 2 1 5 5 C 1.39359 * 120.33833 * 179.97438 * 4 3 2 6 6 N 1.39007 * 119.86969 * 180.02562 * 5 4 3 7 7 C 1.40118 * 120.26808 * 0.03039 * 5 4 3 8 8 O 1.35972 * 120.03047 * 179.97438 * 7 5 4 9 9 C 1.42896 * 117.00355 * 179.97438 * 8 7 5 10 10 C 1.37660 * 119.94318 * 359.97122 * 7 5 4 11 11 C 1.40864 * 119.97003 * 85.00291 * 3 2 1 12 12 C 1.41119 * 120.13899 * 0.02562 * 11 3 2 13 13 H 1.07998 * 119.99727 * 333.88196 * 12 11 3 14 14 C 1.39841 * 120.00242 * 153.88107 * 12 11 3 15 15 N 1.30922 * 119.99870 * 343.58761 * 14 12 11 16 16 Si 1.86794 * 120.00108 * 163.58484 * 14 12 11 17 17 H 1.48495 * 109.47344 * 90.00266 * 16 14 12 18 18 H 1.48502 * 109.47381 * 210.00310 * 16 14 12 19 19 H 1.48497 * 109.47124 * 330.00051 * 16 14 12 20 20 H 1.08993 * 109.47688 * 299.99346 * 1 2 3 21 21 H 1.08997 * 109.47167 * 60.00467 * 1 2 3 22 22 H 1.09003 * 109.46567 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47380 * 240.00206 * 2 1 3 24 24 H 1.08997 * 109.47167 * 119.99533 * 2 1 3 25 25 H 1.08008 * 119.83219 * 0.28135 * 4 3 2 26 26 H 0.97002 * 119.99463 * 0.02562 * 6 5 4 27 27 H 0.97000 * 120.00397 * 180.02562 * 6 5 4 28 28 H 1.09009 * 109.46723 * 299.99651 * 9 8 7 29 29 H 1.09000 * 109.47341 * 59.99363 * 9 8 7 30 30 H 1.09002 * 109.47549 * 179.97438 * 9 8 7 31 31 H 1.08001 * 120.16478 * 179.97438 * 10 7 5 32 32 H 0.96999 * 119.99665 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3565 2.0292 -1.1770 5 6 2.8211 3.3430 -1.1858 6 7 3.1482 3.9536 -2.3910 7 6 2.9599 4.0511 0.0153 8 8 3.4142 5.3326 0.0012 9 6 3.5303 5.9938 1.2626 10 6 2.6360 3.4482 1.2097 11 6 2.1665 2.1198 1.2157 12 6 1.8322 1.4921 2.4345 13 1 1.1094 0.6897 2.4482 14 6 2.4368 1.9089 3.6246 15 7 3.5241 2.6371 3.5863 16 14 1.6930 1.4267 5.2688 17 1 2.2752 0.1359 5.7161 18 1 1.9902 2.4785 6.2742 19 1 0.2222 1.2824 5.1235 20 1 -0.3634 0.5137 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 2.2479 1.4915 -2.1074 26 1 3.0525 3.4653 -3.2237 27 1 3.4721 4.8678 -2.3993 28 1 2.5524 6.0350 1.7425 29 1 4.2242 5.4440 1.8985 30 1 3.9030 7.0065 1.1092 31 1 2.7420 3.9905 2.1377 32 1 3.9437 2.9259 4.4119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575717841.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:48 Heat of formation + Delta-G solvation = -32.189358 kcal Electronic energy + Delta-G solvation = -15189.815974 eV Core-core repulsion = 12728.785368 eV Total energy + Delta-G solvation = -2461.030606 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.81755 -36.64361 -34.35107 -33.09847 -31.29212 -28.41874 -27.82320 -26.46431 -24.31760 -22.24918 -20.89357 -19.30045 -17.61107 -16.21781 -15.80844 -15.10274 -14.72371 -14.63041 -13.93439 -13.36810 -13.16168 -12.72146 -12.49820 -11.84249 -11.75873 -11.47473 -11.24364 -11.05627 -10.86228 -10.75148 -10.44790 -10.04064 -10.00108 -9.45089 -9.40966 -9.27664 -8.56396 -7.02468 -6.65694 -6.15322 -4.06663 2.90159 3.03510 3.12318 3.17058 3.35206 4.02637 4.38313 4.73849 5.15409 5.69447 5.88628 6.00306 6.01800 6.04951 6.22827 6.37706 6.41535 6.66222 6.75971 6.85797 6.94836 7.08700 7.14027 7.25359 7.36240 7.67672 7.78231 8.08284 8.20436 8.45951 8.62421 8.86278 8.93830 9.04727 9.17587 10.34781 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.012608 C = 0.008459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.598719 B = 2220.264347 C = 3309.287090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 C -0.173 4.173 4 C -0.134 4.134 5 C 0.081 3.919 6 N -0.894 5.894 7 C 0.061 3.939 8 O -0.339 6.339 9 C 0.041 3.959 10 C -0.204 4.204 11 C 0.106 3.894 12 C -0.459 4.459 13 H 0.078 0.922 14 C 0.075 3.925 15 N -0.808 5.808 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.263 1.263 20 H 0.058 0.942 21 H 0.042 0.958 22 H 0.037 0.963 23 H 0.041 0.959 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.380 0.620 27 H 0.387 0.613 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 1.410 -3.068 3.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 C -0.175 4.175 4 C -0.157 4.157 5 C -0.018 4.018 6 N -0.438 5.438 7 C 0.014 3.986 8 O -0.254 6.254 9 C -0.055 4.055 10 C -0.225 4.225 11 C 0.102 3.898 12 C -0.490 4.490 13 H 0.096 0.904 14 C -0.140 4.140 15 N -0.435 5.435 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.187 1.187 20 H 0.077 0.923 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.205 0.795 27 H 0.213 0.787 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.147 0.853 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.297 1.575 -2.953 3.590 hybrid contribution -0.116 -0.010 0.836 0.844 sum -1.413 1.565 -2.118 2.988 Atomic orbital electron populations 1.21729 0.97014 0.99447 1.01655 1.20088 0.94347 0.94564 1.00376 1.19211 1.09918 0.95484 0.92911 1.19517 1.06531 0.92779 0.96834 1.16648 1.08555 0.92855 0.83736 1.41623 1.80448 1.16848 1.04861 1.18445 1.03231 0.83349 0.93563 1.85756 1.82901 1.25611 1.31150 1.22712 1.01001 0.95859 0.85881 1.21283 1.09521 0.96682 0.94980 1.17089 0.90722 0.90238 0.91725 1.19377 1.21893 1.16911 0.90835 0.90360 1.25816 0.93540 0.93739 1.00931 1.69871 1.14508 1.29746 1.29420 0.86456 0.80730 0.78846 0.81500 1.19730 1.20412 1.18659 0.92304 0.93842 0.94430 0.94028 0.91595 0.88888 0.79488 0.78731 0.93843 0.92747 0.90441 0.85271 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.78 37.16 0.36 -2.24 16 2 C -0.06 -1.17 5.39 -27.88 -0.15 -1.32 16 3 C -0.17 -4.16 5.16 -104.29 -0.54 -4.70 16 4 C -0.13 -3.05 9.42 -39.83 -0.38 -3.42 16 5 C 0.08 1.86 6.78 -83.49 -0.57 1.29 16 6 N -0.89 -16.72 9.04 32.60 0.29 -16.43 16 7 C 0.06 1.48 6.70 -39.09 -0.26 1.22 16 8 O -0.34 -7.46 9.72 -19.65 -0.19 -7.65 16 9 C 0.04 0.77 9.81 101.05 0.99 1.76 16 10 C -0.20 -5.34 7.65 -38.79 -0.30 -5.64 16 11 C 0.11 2.79 5.56 -106.81 -0.59 2.20 16 12 C -0.46 -12.02 8.07 -37.89 -0.31 -12.32 16 13 H 0.08 1.97 6.05 -52.49 -0.32 1.65 16 14 C 0.07 1.89 5.15 -17.34 -0.09 1.80 16 15 N -0.81 -20.99 10.97 55.54 0.61 -20.38 16 16 Si 0.90 18.92 29.59 -169.99 -5.03 13.89 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 20 H 0.06 1.16 7.27 -51.93 -0.38 0.78 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.04 0.78 8.04 -51.93 -0.42 0.36 16 24 H 0.07 1.42 7.04 -51.93 -0.37 1.06 16 25 H 0.09 1.88 8.05 -52.48 -0.42 1.45 16 26 H 0.38 6.04 8.83 -40.82 -0.36 5.68 16 27 H 0.39 6.86 8.16 -40.82 -0.33 6.52 16 28 H 0.04 0.81 7.66 -51.92 -0.40 0.41 16 29 H 0.05 1.07 7.66 -51.93 -0.40 0.68 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.13 3.42 4.44 -52.49 -0.23 3.19 16 32 H 0.27 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 266.07 15.07 4.01 4.01 Total: -1.00 -28.25 266.07 -6.16 -34.41 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -4.03 Total: 13.52 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -1.82 Total: -21.37 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.90 Total: -36.81 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.19 Total: -7.65 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.25 -6.16 -34.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717841.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.220 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds