Wall clock time and date at job start Mon Mar 30 2020 20:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46889 * 2 1 4 4 C 1.52996 * 109.47466 * 239.99822 * 2 1 3 5 5 C 1.50699 * 109.47448 * 174.99499 * 4 2 1 6 6 H 1.07998 * 119.99721 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00221 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99639 * 179.72850 * 7 5 4 9 9 Si 1.86795 * 119.99795 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47347 * 269.72449 * 9 7 5 11 11 H 1.48499 * 109.47217 * 29.72521 * 9 7 5 12 12 H 1.48500 * 109.47294 * 149.72519 * 9 7 5 13 13 O 1.42905 * 109.47248 * 119.99686 * 2 1 3 14 14 C 1.36001 * 116.99867 * 275.25560 * 13 2 1 15 15 C 1.38699 * 119.97874 * 185.09435 * 14 13 2 16 16 C 1.38114 * 120.01864 * 179.76693 * 15 14 13 17 17 C 1.38853 * 119.98056 * 0.50058 * 16 15 14 18 18 N 1.39936 * 120.01990 * 179.76597 * 17 16 15 19 19 C 1.38862 * 119.96207 * 359.74980 * 17 16 15 20 20 C 1.38111 * 119.98083 * 359.97438 * 19 17 16 21 21 H 1.09004 * 109.47626 * 299.99995 * 1 2 3 22 22 H 1.09000 * 109.47516 * 60.00276 * 1 2 3 23 23 H 1.09002 * 109.46889 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46635 * 54.99693 * 4 2 1 25 25 H 1.08999 * 109.47190 * 294.99761 * 4 2 1 26 26 H 0.97003 * 119.99552 * 180.27441 * 8 7 5 27 27 H 1.08002 * 119.99207 * 359.97438 * 15 14 13 28 28 H 1.07999 * 120.00681 * 180.25195 * 16 15 14 29 29 H 0.97007 * 119.99994 * 179.97438 * 18 17 16 30 30 H 0.96998 * 119.99984 * 359.97438 * 18 17 16 31 31 H 1.08002 * 120.01041 * 179.97438 * 19 17 16 32 32 H 1.07999 * 119.99269 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0860 -0.5392 7 6 4.2304 -1.1925 -2.3583 8 7 5.5406 -1.0950 -2.4165 9 14 3.3014 -2.1066 -3.6965 10 1 3.1757 -3.5382 -3.3224 11 1 1.9483 -1.5150 -3.8522 12 1 4.0418 -1.9933 -4.9788 13 8 2.0063 -0.6736 1.1668 14 6 2.1075 0.0620 2.3063 15 6 2.6616 -0.4999 3.4470 16 6 2.7691 0.2479 4.6032 17 6 2.3129 1.5591 4.6265 18 7 2.4169 2.3159 5.7989 19 6 1.7535 2.1191 3.4855 20 6 1.6520 1.3718 2.3285 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6053 -0.2617 -2.1369 25 1 1.7517 -1.7715 -1.2055 26 1 6.0246 -1.4981 -3.1542 27 1 3.0121 -1.5213 3.4301 28 1 3.2043 -0.1885 5.4901 29 1 2.0984 3.2321 5.8147 30 1 2.8076 1.9244 6.5958 31 1 1.3980 3.1388 3.5029 32 1 1.2166 1.8070 1.4411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710002258.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:28 Heat of formation + Delta-G solvation = -43.379364 kcal Electronic energy + Delta-G solvation = -14625.395486 eV Core-core repulsion = 12163.879644 eV Total energy + Delta-G solvation = -2461.515842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.99805 -38.88421 -35.59518 -34.53581 -33.35154 -31.80912 -29.76933 -28.53831 -24.97124 -24.10222 -22.86524 -21.38933 -19.14224 -18.85384 -17.70592 -17.61223 -16.45670 -16.12748 -15.64218 -15.35034 -14.74023 -14.43922 -14.35198 -14.01674 -13.81451 -13.45529 -13.37373 -13.16357 -12.78744 -12.53876 -12.05146 -11.78049 -11.66891 -11.39081 -11.25850 -10.75641 -10.51540 -9.87953 -8.26812 -7.98526 -6.30720 0.46290 0.79981 1.37349 1.39671 1.50938 2.37737 2.61304 3.00539 3.09639 3.15533 3.98230 4.03220 4.10682 4.23803 4.43237 4.46233 4.58528 4.75842 4.85492 4.98563 5.08911 5.14974 5.19628 5.28501 5.42082 5.43435 5.61824 5.64660 5.87044 6.27727 6.65446 6.74045 6.89258 7.15247 7.31617 8.90788 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043468 B = 0.006592 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.990225 B = 4246.751224 C = 4569.966125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 H 0.057 0.943 4 C -0.011 4.011 5 C -0.522 4.522 6 H 0.022 0.978 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.238 1.238 12 H -0.283 1.283 13 O -0.329 6.329 14 C 0.054 3.946 15 C -0.130 4.130 16 C -0.160 4.160 17 C 0.172 3.828 18 N -0.870 5.870 19 C -0.163 4.163 20 C -0.172 4.172 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.024 0.976 26 H 0.266 0.734 27 H 0.122 0.878 28 H 0.148 0.852 29 H 0.405 0.595 30 H 0.405 0.595 31 H 0.144 0.856 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 5.919 13.013 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.040 3.960 3 H 0.075 0.925 4 C -0.048 4.048 5 C -0.560 4.560 6 H 0.041 0.959 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.161 1.161 12 H -0.208 1.208 13 O -0.244 6.244 14 C 0.008 3.992 15 C -0.149 4.149 16 C -0.182 4.182 17 C 0.068 3.932 18 N -0.413 5.413 19 C -0.186 4.186 20 C -0.192 4.192 21 H 0.086 0.914 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.166 0.834 29 H 0.235 0.765 30 H 0.235 0.765 31 H 0.162 0.838 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.997 5.655 12.836 17.823 hybrid contribution 0.409 -0.169 -0.499 0.667 sum -10.588 5.486 12.337 17.158 Atomic orbital electron populations 1.22330 0.93557 1.03209 1.03363 1.22380 0.94142 0.95809 0.83652 0.92548 1.19703 0.94632 0.96851 0.93586 1.21301 0.92227 1.34397 1.08097 0.95937 1.26061 0.95664 0.96941 1.00876 1.70088 1.08756 1.47194 1.33497 0.85599 0.79939 0.79157 0.77569 1.19574 1.16112 1.20842 1.86141 1.82125 1.39070 1.17019 1.19287 1.00306 0.92041 0.87582 1.20405 1.01969 1.01021 0.91527 1.20576 1.05881 0.93443 0.98348 1.17739 0.96012 0.91277 0.88188 1.42265 1.72251 1.16220 1.10582 1.20617 1.05386 1.00920 0.91636 1.21240 1.04421 0.93569 0.99936 0.91377 0.89502 0.91844 0.92997 0.95814 0.92559 0.86008 0.83440 0.76518 0.76512 0.83789 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.23 9.17 71.98 0.66 -4.57 16 2 C 0.10 4.02 2.17 30.59 0.07 4.08 16 3 H 0.06 2.39 6.32 -2.39 -0.02 2.38 16 4 C -0.01 -0.51 3.75 29.85 0.11 -0.40 16 5 C -0.52 -31.60 9.43 25.60 0.24 -31.36 16 6 H 0.02 1.53 7.99 -2.91 -0.02 1.51 16 7 C 0.00 0.04 5.47 84.66 0.46 0.50 16 8 N -0.95 -62.05 13.96 21.45 0.30 -61.75 16 9 Si 0.95 45.06 27.47 68.60 1.88 46.95 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.24 -10.08 6.53 99.48 0.65 -9.43 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 O -0.33 -14.97 9.56 -93.56 -0.89 -15.87 16 14 C 0.05 2.14 6.60 22.49 0.15 2.28 16 15 C -0.13 -4.56 9.98 22.35 0.22 -4.34 16 16 C -0.16 -4.42 9.89 22.39 0.22 -4.20 16 17 C 0.17 4.30 6.76 38.14 0.26 4.56 16 18 N -0.87 -14.00 9.10 -51.27 -0.47 -14.47 16 19 C -0.16 -4.42 9.89 22.39 0.22 -4.20 16 20 C -0.17 -5.77 8.23 22.35 0.18 -5.58 16 21 H 0.07 1.91 6.89 -2.39 -0.02 1.89 16 22 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.05 2.33 7.20 -2.38 -0.02 2.31 16 25 H 0.02 1.14 7.57 -2.39 -0.02 1.12 16 26 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 27 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 28 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 29 H 0.41 4.85 8.84 -92.70 -0.82 4.03 16 30 H 0.41 4.88 8.84 -92.71 -0.82 4.06 16 31 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 32 H 0.13 4.16 5.41 -2.91 -0.02 4.15 16 Total: -1.00 -73.66 270.00 3.06 -70.60 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.56 Total: 17.75 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 2.80 Total: -43.22 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -0.17 Total: -76.21 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.89 Total: -15.87 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Total: -73.66 3.06 -70.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002258.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.225 kcal (2) G-P(sol) polarization free energy of solvation -73.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds