Wall clock time and date at job start Mon Mar 30 2020 20:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46706 * 2 1 4 4 C 1.53007 * 109.47408 * 119.99757 * 2 1 3 5 5 C 1.50696 * 109.46740 * 185.00291 * 4 2 1 6 6 H 1.08001 * 120.00872 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99795 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99808 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00302 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47206 * 89.99967 * 9 7 5 11 11 H 1.48502 * 109.47376 * 209.99661 * 9 7 5 12 12 H 1.48498 * 109.47004 * 329.99964 * 9 7 5 13 13 O 1.42894 * 109.47121 * 240.00287 * 2 1 3 14 14 C 1.35994 * 117.00486 * 85.09819 * 13 2 1 15 15 C 1.38704 * 119.98183 * 354.30542 * 14 13 2 16 16 C 1.38105 * 120.02034 * 179.76324 * 15 14 13 17 17 C 1.38854 * 119.98411 * 0.51480 * 16 15 14 18 18 N 1.39935 * 120.02289 * 179.76205 * 17 16 15 19 19 C 1.38859 * 119.96083 * 359.74111 * 17 16 15 20 20 C 1.38111 * 119.98095 * 359.97438 * 19 17 16 21 21 H 1.09004 * 109.47241 * 299.99453 * 1 2 3 22 22 H 1.08998 * 109.47416 * 60.00186 * 1 2 3 23 23 H 1.09001 * 109.47003 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46824 * 305.00221 * 4 2 1 25 25 H 1.09000 * 109.46771 * 65.00185 * 4 2 1 26 26 H 0.97003 * 120.00336 * 180.02562 * 8 7 5 27 27 H 1.08004 * 119.98654 * 0.02562 * 15 14 13 28 28 H 1.08010 * 120.00627 * 180.25684 * 16 15 14 29 29 H 0.96998 * 120.00330 * 179.97438 * 18 17 16 30 30 H 0.97003 * 120.00061 * 359.97438 * 18 17 16 31 31 H 1.08002 * 120.01481 * 179.97438 * 19 17 16 32 32 H 1.07997 * 119.99329 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6147 1.3127 6 1 4.0791 -0.0860 0.5391 7 6 4.2306 -1.1933 2.3577 8 7 3.5767 -1.8385 3.2989 9 14 6.0923 -1.0620 2.4360 10 1 6.4711 0.1603 3.1896 11 1 6.6444 -2.2576 3.1223 12 1 6.6413 -0.9842 1.0585 13 8 2.0063 -0.6735 -1.1668 14 6 2.1145 0.0637 -2.3044 15 6 1.6589 1.3735 -2.3275 16 6 1.7729 2.1245 -3.4810 17 6 2.3340 1.5645 -4.6210 18 7 2.4453 2.3231 -5.7916 19 6 2.7850 0.2514 -4.5986 20 6 2.6757 -0.4963 -3.4426 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6054 -0.2617 2.1370 25 1 1.7518 -1.7715 1.2056 26 1 4.0611 -2.2452 4.0344 27 1 1.2188 1.8077 -1.4419 28 1 1.4218 3.1458 -3.4975 29 1 2.8377 1.9317 -6.5877 30 1 2.1301 3.2403 -5.8070 31 1 3.2213 -0.1852 -5.4849 32 1 3.0261 -1.5177 -3.4251 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710002259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:30 Heat of formation + Delta-G solvation = -45.867908 kcal Electronic energy + Delta-G solvation = -14613.245195 eV Core-core repulsion = 12151.621442 eV Total energy + Delta-G solvation = -2461.623753 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.97913 -38.85960 -35.61824 -34.53003 -33.17486 -31.75164 -29.35171 -28.49768 -25.26233 -24.14911 -22.89507 -21.41170 -19.06346 -18.50736 -17.67155 -17.59071 -16.59123 -16.06241 -15.68789 -15.33921 -14.66614 -14.34532 -14.22011 -13.91788 -13.65352 -13.33817 -13.31591 -13.11092 -12.79675 -12.62382 -12.34982 -12.02664 -11.64113 -11.24257 -11.16693 -10.57973 -10.48412 -9.86541 -8.20301 -7.97050 -6.29025 0.47773 0.81430 1.37941 1.39747 1.51310 2.41019 2.64105 3.01827 3.13955 3.16941 4.00833 4.05367 4.14171 4.28790 4.46037 4.47889 4.60164 4.77385 4.85495 5.05504 5.15843 5.20387 5.27770 5.38609 5.44724 5.54154 5.65215 5.77606 5.89229 6.21347 6.67499 6.81744 6.91777 7.16341 7.38238 8.91671 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032857 B = 0.007041 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.985331 B = 3975.476366 C = 4497.158270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 H 0.061 0.939 4 C 0.028 3.972 5 C -0.530 4.530 6 H 0.049 0.951 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.271 1.271 13 O -0.328 6.328 14 C 0.054 3.946 15 C -0.173 4.173 16 C -0.162 4.162 17 C 0.172 3.828 18 N -0.870 5.870 19 C -0.159 4.159 20 C -0.129 4.129 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.024 0.976 25 H -0.003 1.003 26 H 0.264 0.736 27 H 0.130 0.870 28 H 0.144 0.856 29 H 0.405 0.595 30 H 0.405 0.595 31 H 0.148 0.852 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 8.639 -16.319 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.009 4.009 5 C -0.568 4.568 6 H 0.067 0.933 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.196 1.196 13 O -0.243 6.243 14 C 0.007 3.993 15 C -0.192 4.192 16 C -0.185 4.185 17 C 0.068 3.932 18 N -0.413 5.413 19 C -0.181 4.181 20 C -0.148 4.148 21 H 0.098 0.902 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.015 0.985 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.161 0.839 29 H 0.235 0.765 30 H 0.235 0.765 31 H 0.166 0.834 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.505 8.313 -16.082 18.440 hybrid contribution 0.808 0.009 0.372 0.890 sum -2.697 8.323 -15.710 17.982 Atomic orbital electron populations 1.22298 0.94421 1.02630 1.02981 1.22474 0.93768 0.95884 0.83871 0.92084 1.19119 0.95522 0.95048 0.91223 1.21458 0.93308 1.34323 1.07726 0.93251 1.25869 1.03546 0.94795 0.95266 1.70069 1.37538 1.36813 1.12769 0.85513 0.79630 0.78033 0.78299 1.19346 1.20424 1.19574 1.86159 1.82012 1.38993 1.17109 1.19321 1.00253 0.92000 0.87701 1.21232 1.04364 0.93618 0.99971 1.20602 1.05333 1.00859 0.91696 1.17736 0.96044 0.91273 0.88148 1.42268 1.72241 1.16033 1.10794 1.20574 1.05918 0.93352 0.98298 1.20402 1.01967 1.01006 0.91427 0.90214 0.91132 0.92669 0.95806 0.98461 0.92683 0.85239 0.83873 0.76510 0.76546 0.83396 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.86 9.17 71.98 0.66 -5.20 16 2 C 0.10 4.24 2.17 30.60 0.07 4.30 16 3 H 0.06 2.62 6.31 -2.39 -0.02 2.61 16 4 C 0.03 1.52 4.68 29.85 0.14 1.66 16 5 C -0.53 -31.55 8.88 25.60 0.23 -31.32 16 6 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 7 C 0.00 0.17 5.46 84.66 0.46 0.63 16 8 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 9 Si 0.96 45.99 29.54 68.60 2.03 48.02 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 O -0.33 -15.12 9.55 -93.49 -0.89 -16.01 16 14 C 0.05 2.07 6.60 22.49 0.15 2.22 16 15 C -0.17 -5.67 8.24 22.35 0.18 -5.48 16 16 C -0.16 -4.26 9.89 22.39 0.22 -4.04 16 17 C 0.17 4.12 6.76 38.14 0.26 4.38 16 18 N -0.87 -13.17 9.10 -51.27 -0.47 -13.64 16 19 C -0.16 -4.18 9.89 22.39 0.22 -3.96 16 20 C -0.13 -4.35 9.98 22.35 0.22 -4.13 16 21 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 22 H 0.07 2.16 6.91 -2.39 -0.02 2.14 16 23 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 27 H 0.13 4.10 5.41 -2.91 -0.02 4.08 16 28 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.41 4.49 8.84 -92.71 -0.82 3.67 16 30 H 0.41 4.52 8.84 -92.71 -0.82 3.70 16 31 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -69.82 273.64 3.26 -66.56 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -0.51 Total: 13.30 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 2.81 Total: -40.94 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -0.18 Total: -70.93 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.89 Total: -16.01 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -69.82 3.26 -66.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710002259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.691 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds