Wall clock time and date at job start Mon Mar 30 2020 20:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46890 * 2 1 4 4 C 1.53002 * 109.46876 * 240.00214 * 2 1 3 5 5 O 1.42897 * 109.47107 * 64.99965 * 4 2 1 6 6 C 1.50701 * 109.47068 * 120.00259 * 2 1 3 7 7 C 1.38635 * 119.74919 * 90.30058 * 6 2 1 8 8 C 1.37619 * 120.24315 * 180.30050 * 7 6 2 9 9 C 1.40711 * 119.74798 * 359.42278 * 8 7 6 10 10 C 1.41396 * 120.24787 * 180.29782 * 9 8 7 11 11 H 1.08005 * 119.99505 * 335.28837 * 10 9 8 12 12 C 1.39942 * 120.00083 * 155.28075 * 10 9 8 13 13 N 1.30817 * 120.00502 * 342.23482 * 12 10 9 14 14 Si 1.86807 * 119.99811 * 162.22853 * 12 10 9 15 15 H 1.48505 * 109.46906 * 94.66663 * 14 12 10 16 16 H 1.48499 * 109.47220 * 214.66572 * 14 12 10 17 17 H 1.48500 * 109.47278 * 334.66810 * 14 12 10 18 18 C 1.40719 * 119.50966 * 0.27391 * 9 8 7 19 19 C 1.37612 * 119.74521 * 0.02562 * 18 9 8 20 20 H 1.08995 * 109.47047 * 300.00102 * 1 2 3 21 21 H 1.09000 * 109.46977 * 59.99759 * 1 2 3 22 22 H 1.09001 * 109.46790 * 179.97438 * 1 2 3 23 23 H 1.00903 * 110.99550 * 180.02562 * 3 2 1 24 24 H 1.00898 * 110.99960 * 303.95087 * 3 2 1 25 25 H 1.08998 * 109.46947 * 185.00086 * 4 2 1 26 26 H 1.09002 * 109.47187 * 304.99432 * 4 2 1 27 27 H 0.96707 * 113.99917 * 179.97438 * 5 4 2 28 28 H 1.07995 * 119.87715 * 359.97438 * 7 6 2 29 29 H 1.07999 * 120.12174 * 179.69437 * 8 7 6 30 30 H 0.97001 * 120.00527 * 179.97438 * 13 12 10 31 31 H 1.08003 * 120.12678 * 180.02562 * 18 9 8 32 32 H 1.08006 * 119.87565 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.6619 0.0168 -2.4131 6 6 2.0323 -0.7105 1.2304 7 6 2.2676 -2.0761 1.1884 8 6 2.7205 -2.7362 2.3078 9 6 2.9563 -2.0177 3.4945 10 6 3.4276 -2.6842 4.6490 11 1 3.2393 -3.7399 4.7777 12 6 4.1382 -1.9760 5.6247 13 7 4.6675 -0.8153 5.3350 14 14 4.3309 -2.6882 7.3409 15 1 5.6193 -3.4212 7.4309 16 1 4.3167 -1.5878 8.3379 17 1 3.2099 -3.6219 7.6181 18 6 2.7200 -0.6308 3.5236 19 6 2.2613 0.0075 2.3941 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.0283 1.4119 -0.0004 24 1 1.6441 1.9013 -0.7814 25 1 3.1263 -0.7995 -1.2057 26 1 1.6054 -1.7198 -1.2952 27 1 1.9531 -0.3829 -3.2441 28 1 2.0898 -2.6247 0.2754 29 1 2.8984 -3.8009 2.2743 30 1 5.1598 -0.3243 6.0114 31 1 2.8980 -0.0694 4.4289 32 1 2.0788 1.0719 2.4142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713800803.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:42 Heat of formation + Delta-G solvation = -41.610292 kcal Electronic energy + Delta-G solvation = -14869.003857 eV Core-core repulsion = 12407.564728 eV Total energy + Delta-G solvation = -2461.439129 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.64615 -36.73840 -34.71050 -33.14944 -29.70663 -29.39825 -28.21906 -26.03592 -24.95581 -21.44528 -20.62494 -18.72631 -17.47775 -17.10939 -15.42217 -15.06226 -14.94673 -14.41634 -13.87306 -13.70842 -12.87880 -12.73032 -12.49155 -11.96875 -11.84092 -11.51065 -11.39216 -11.08252 -11.01169 -10.76743 -10.52055 -10.23955 -9.87616 -9.48606 -9.32811 -9.10455 -8.13393 -7.39354 -7.28434 -6.73647 -4.32696 2.78082 3.07911 3.10551 3.12574 3.21800 3.94610 4.38832 4.63407 5.13180 5.42556 5.46415 5.71245 5.74670 5.88631 6.16319 6.28039 6.31657 6.52916 6.55256 6.73234 7.04216 7.09177 7.29372 7.37416 7.61226 7.68980 7.74588 7.81712 8.06270 8.11201 8.23780 8.33778 8.68682 8.92445 9.01263 10.20700 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.060079 B = 0.006617 C = 0.006355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.937328 B = 4230.444438 C = 4405.206322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.185 3.815 3 N -0.829 5.829 4 C 0.047 3.953 5 O -0.577 6.577 6 C -0.207 4.207 7 C -0.092 4.092 8 C -0.228 4.228 9 C 0.111 3.889 10 C -0.464 4.464 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.792 5.792 14 Si 0.906 3.094 15 H -0.271 1.271 16 H -0.275 1.275 17 H -0.261 1.261 18 C -0.170 4.170 19 C -0.072 4.072 20 H 0.059 0.941 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.337 0.663 24 H 0.335 0.665 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.372 0.628 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.280 0.720 31 H 0.117 0.883 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 0.822 -7.530 8.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.092 3.908 3 N -0.358 5.358 4 C -0.032 4.032 5 O -0.382 6.382 6 C -0.209 4.209 7 C -0.111 4.111 8 C -0.248 4.248 9 C 0.109 3.891 10 C -0.494 4.494 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.417 5.417 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.200 1.200 17 H -0.185 1.185 18 C -0.190 4.190 19 C -0.091 4.091 20 H 0.078 0.922 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.150 0.850 24 H 0.148 0.852 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.218 0.782 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.261 1.477 -6.254 7.206 hybrid contribution 1.004 -1.059 -0.575 1.569 sum -2.256 0.417 -6.829 7.204 Atomic orbital electron populations 1.21726 0.94348 1.01109 1.01223 1.19305 0.94432 0.87136 0.89943 1.58904 1.13588 1.13005 1.50274 1.23270 0.98342 0.95195 0.86440 1.86394 1.81692 1.53700 1.16418 1.18768 1.14562 0.93130 0.94455 1.20378 1.00377 0.93592 0.96757 1.20907 1.11963 0.98236 0.93672 1.17646 0.87921 0.92179 0.91369 1.19584 1.30646 0.96762 1.02393 0.90587 1.25898 0.93356 0.94425 1.00451 1.69829 1.24220 1.12778 1.34919 0.86348 0.79482 0.79643 0.81519 1.19647 1.20032 1.18462 1.21351 1.04369 0.95397 0.97865 1.20549 0.97961 0.98105 0.92458 0.92176 0.93339 0.92922 0.85014 0.85240 0.93755 0.93455 0.78180 0.89773 0.89210 0.90923 0.86564 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.61 37.16 0.32 -1.82 16 2 C 0.18 3.29 0.87 -132.75 -0.12 3.17 16 3 N -0.83 -13.95 7.70 -0.19 0.00 -13.95 16 4 C 0.05 0.73 5.20 37.16 0.19 0.92 16 5 O -0.58 -7.73 12.51 -35.23 -0.44 -8.17 16 6 C -0.21 -4.49 4.82 -104.33 -0.50 -4.99 16 7 C -0.09 -2.04 9.11 -39.66 -0.36 -2.40 16 8 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 9 C 0.11 2.99 5.57 -106.82 -0.60 2.40 16 10 C -0.46 -12.44 9.05 -37.74 -0.34 -12.78 16 11 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 12 C 0.08 1.94 5.14 -17.35 -0.09 1.85 16 13 N -0.79 -20.67 10.97 55.55 0.61 -20.06 16 14 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 15 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 18 C -0.17 -4.48 8.70 -38.87 -0.34 -4.82 16 19 C -0.07 -1.71 9.29 -39.66 -0.37 -2.08 16 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 21 H 0.05 0.75 7.82 -51.93 -0.41 0.35 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.34 5.65 8.99 -39.29 -0.35 5.30 16 24 H 0.34 5.12 8.38 -39.29 -0.33 4.79 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.72 6.79 -51.93 -0.35 0.36 16 27 H 0.37 3.28 9.12 45.56 0.42 3.69 16 28 H 0.08 1.63 6.25 -52.49 -0.33 1.30 16 29 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 31 H 0.12 3.17 6.18 -52.48 -0.32 2.85 16 32 H 0.10 2.30 7.38 -52.48 -0.39 1.92 16 LS Contribution 267.86 15.07 4.04 4.04 Total: -1.00 -28.06 267.86 -6.71 -34.78 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -3.31 Total: 16.17 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -2.58 Total: -26.55 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.61 Total: -34.01 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.44 Total: -8.17 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.06 -6.71 -34.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713800803.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.833 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds