Wall clock time and date at job start Mon Mar 30 2020 20:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46890 * 2 1 4 4 C 1.53002 * 109.46876 * 240.00214 * 2 1 3 5 5 O 1.42897 * 109.47107 * 64.99965 * 4 2 1 6 6 C 1.50701 * 109.47068 * 120.00259 * 2 1 3 7 7 C 1.38635 * 119.74919 * 90.30058 * 6 2 1 8 8 C 1.37619 * 120.24315 * 180.30050 * 7 6 2 9 9 C 1.40711 * 119.74798 * 359.42278 * 8 7 6 10 10 C 1.41396 * 120.24787 * 180.29782 * 9 8 7 11 11 H 1.08005 * 119.99505 * 335.28837 * 10 9 8 12 12 C 1.39942 * 120.00083 * 155.28075 * 10 9 8 13 13 N 1.30817 * 120.00502 * 342.23482 * 12 10 9 14 14 Si 1.86807 * 119.99811 * 162.22853 * 12 10 9 15 15 H 1.48505 * 109.46906 * 94.66663 * 14 12 10 16 16 H 1.48499 * 109.47220 * 214.66572 * 14 12 10 17 17 H 1.48500 * 109.47278 * 334.66810 * 14 12 10 18 18 C 1.40719 * 119.50966 * 0.27391 * 9 8 7 19 19 C 1.37612 * 119.74521 * 0.02562 * 18 9 8 20 20 H 1.08995 * 109.47047 * 300.00102 * 1 2 3 21 21 H 1.09000 * 109.46977 * 59.99759 * 1 2 3 22 22 H 1.09001 * 109.46790 * 179.97438 * 1 2 3 23 23 H 1.00903 * 110.99550 * 180.02562 * 3 2 1 24 24 H 1.00898 * 110.99960 * 303.95087 * 3 2 1 25 25 H 1.08998 * 109.46947 * 185.00086 * 4 2 1 26 26 H 1.09002 * 109.47187 * 304.99432 * 4 2 1 27 27 H 0.96707 * 113.99917 * 179.97438 * 5 4 2 28 28 H 1.07995 * 119.87715 * 359.97438 * 7 6 2 29 29 H 1.07999 * 120.12174 * 179.69437 * 8 7 6 30 30 H 0.97001 * 120.00527 * 179.97438 * 13 12 10 31 31 H 1.08003 * 120.12678 * 180.02562 * 18 9 8 32 32 H 1.08006 * 119.87565 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.6619 0.0168 -2.4131 6 6 2.0323 -0.7105 1.2304 7 6 2.2676 -2.0761 1.1884 8 6 2.7205 -2.7362 2.3078 9 6 2.9563 -2.0177 3.4945 10 6 3.4276 -2.6842 4.6490 11 1 3.2393 -3.7399 4.7777 12 6 4.1382 -1.9760 5.6247 13 7 4.6675 -0.8153 5.3350 14 14 4.3309 -2.6882 7.3409 15 1 5.6193 -3.4212 7.4309 16 1 4.3167 -1.5878 8.3379 17 1 3.2099 -3.6219 7.6181 18 6 2.7200 -0.6308 3.5236 19 6 2.2613 0.0075 2.3941 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.0283 1.4119 -0.0004 24 1 1.6441 1.9013 -0.7814 25 1 3.1263 -0.7995 -1.2057 26 1 1.6054 -1.7198 -1.2952 27 1 1.9531 -0.3829 -3.2441 28 1 2.0898 -2.6247 0.2754 29 1 2.8984 -3.8009 2.2743 30 1 5.1598 -0.3243 6.0114 31 1 2.8980 -0.0694 4.4289 32 1 2.0788 1.0719 2.4142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713800803.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:42 Heat of formation + Delta-G solvation = -61.767098 kcal Electronic energy + Delta-G solvation = -14869.877922 eV Core-core repulsion = 12407.564728 eV Total energy + Delta-G solvation = -2462.313193 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22680 -38.25043 -36.15864 -34.88937 -31.42533 -31.27883 -29.71911 -27.46508 -26.66583 -23.20884 -22.46853 -20.30557 -19.21049 -18.46658 -17.16451 -16.51213 -16.33059 -15.87555 -15.47550 -15.30085 -14.62101 -14.37699 -13.97452 -13.66610 -13.49539 -13.23482 -12.78696 -12.76400 -12.58352 -12.34748 -12.20512 -11.90432 -11.38036 -11.18111 -10.99398 -10.90115 -9.47361 -9.29968 -9.18438 -8.61775 -6.31409 0.98528 1.18100 1.38004 1.49367 1.54690 2.21386 2.73736 3.28722 3.72225 3.82018 4.09529 4.23409 4.36048 4.49885 4.62581 4.69939 4.80752 4.98921 5.06401 5.17643 5.18837 5.37866 5.41413 5.48831 5.75166 5.98311 6.10851 6.16477 6.41240 6.51197 6.73490 6.76768 6.87342 6.96781 7.07566 8.35041 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.060079 B = 0.006617 C = 0.006355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.937328 B = 4230.444438 C = 4405.206322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.180 3.820 3 N -0.834 5.834 4 C 0.058 3.942 5 O -0.580 6.580 6 C -0.194 4.194 7 C -0.090 4.090 8 C -0.244 4.244 9 C 0.078 3.922 10 C -0.503 4.503 11 H 0.074 0.926 12 C 0.035 3.965 13 N -0.826 5.826 14 Si 0.981 3.019 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.259 1.259 18 C -0.195 4.195 19 C -0.077 4.077 20 H 0.046 0.954 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.338 0.662 24 H 0.347 0.653 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.396 0.604 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.287 0.713 31 H 0.096 0.904 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 0.619 -8.831 9.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 N -0.363 5.363 4 C -0.022 4.022 5 O -0.388 6.388 6 C -0.195 4.195 7 C -0.108 4.108 8 C -0.263 4.263 9 C 0.076 3.924 10 C -0.533 4.533 11 H 0.092 0.908 12 C -0.180 4.180 13 N -0.452 5.452 14 Si 0.801 3.199 15 H -0.187 1.187 16 H -0.191 1.191 17 H -0.183 1.183 18 C -0.214 4.214 19 C -0.095 4.095 20 H 0.065 0.935 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.150 0.850 24 H 0.161 0.839 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.245 0.755 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.715 1.277 -7.600 8.555 hybrid contribution 1.091 -0.926 -0.357 1.475 sum -2.625 0.351 -7.957 8.386 Atomic orbital electron populations 1.21674 0.93407 1.01473 1.01417 1.19275 0.95036 0.87548 0.89404 1.58826 1.13689 1.12668 1.51143 1.22934 0.97891 0.95122 0.86260 1.86333 1.81726 1.53771 1.16958 1.19185 1.11866 0.93232 0.95245 1.20715 0.98937 0.93965 0.97178 1.21141 1.12443 0.98777 0.93945 1.17989 0.89090 0.92771 0.92582 1.19831 1.32482 0.97047 1.03945 0.90817 1.26751 0.92392 0.94675 1.04183 1.69886 1.24848 1.14065 1.36424 0.85222 0.79578 0.78951 0.76112 1.18661 1.19099 1.18319 1.21291 1.06350 0.95551 0.98233 1.20679 0.97700 0.98525 0.92618 0.93520 0.91617 0.92507 0.85010 0.83911 0.94220 0.92651 0.75479 0.86318 0.88561 0.90250 0.88628 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.80 8.61 71.98 0.62 -3.18 16 2 C 0.18 5.97 0.87 2.78 0.00 5.97 16 3 N -0.83 -26.25 7.70 -154.52 -1.19 -27.44 16 4 C 0.06 1.59 5.20 71.98 0.37 1.96 16 5 O -0.58 -13.19 12.51 -148.98 -1.86 -15.05 16 6 C -0.19 -8.12 4.82 -19.67 -0.09 -8.21 16 7 C -0.09 -3.82 9.11 22.22 0.20 -3.62 16 8 C -0.24 -12.04 9.80 22.73 0.22 -11.81 16 9 C 0.08 4.31 5.57 -21.29 -0.12 4.19 16 10 C -0.50 -27.87 9.05 23.46 0.21 -27.66 16 11 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 12 C 0.03 1.79 5.14 85.26 0.44 2.23 16 13 N -0.83 -44.41 10.97 21.82 0.24 -44.17 16 14 Si 0.98 39.04 29.59 68.60 2.03 41.07 16 15 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 16 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 18 C -0.19 -10.59 8.70 22.73 0.20 -10.39 16 19 C -0.08 -3.66 9.29 22.22 0.21 -3.45 16 20 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.06 1.82 7.82 -2.39 -0.02 1.80 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 23 H 0.34 10.70 8.99 -89.69 -0.81 9.89 16 24 H 0.35 9.64 8.38 -89.70 -0.75 8.89 16 25 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.44 6.79 -2.39 -0.02 1.43 16 27 H 0.40 5.26 9.12 -74.05 -0.68 4.59 16 28 H 0.12 4.21 6.25 -2.91 -0.02 4.19 16 29 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 30 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 31 H 0.10 5.49 6.18 -2.91 -0.02 5.48 16 32 H 0.11 4.89 7.38 -2.91 -0.02 4.87 16 Total: -1.00 -61.04 267.86 0.40 -60.64 By element: Atomic # 1 Polarization: 40.01 SS G_CDS: -1.08 Total: 38.93 kcal Atomic # 6 Polarization: -56.24 SS G_CDS: 2.26 Total: -53.98 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -0.95 Total: -71.61 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -1.86 Total: -15.05 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -61.04 0.40 -60.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713800803.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.127 kcal (2) G-P(sol) polarization free energy of solvation -61.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds