Wall clock time and date at job start Mon Mar 30 2020 20:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.50700 * 109.47308 * 51.92513 * 3 2 1 5 5 O 1.21284 * 119.99870 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00270 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00437 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.40884 * 324.86323 * 7 6 4 9 9 C 1.52961 * 109.35656 * 84.68204 * 7 6 4 10 10 C 1.53656 * 109.32481 * 183.79882 * 9 7 6 11 11 C 1.51260 * 108.31295 * 305.14505 * 10 9 7 12 12 C 1.37881 * 120.84904 * 231.38172 * 11 10 9 13 13 N 1.31520 * 120.00186 * 180.27952 * 12 11 10 14 14 Si 1.86798 * 120.00030 * 0.27852 * 12 11 10 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 11 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 11 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 11 18 18 C 1.51268 * 118.30514 * 51.65464 * 11 10 9 19 19 C 1.52959 * 109.41808 * 205.00474 * 7 6 4 20 20 H 4.43222 * 5.59231 * 180.02562 * 4 1 2 21 21 H 1.08999 * 109.47572 * 291.91986 * 3 2 1 22 22 H 1.09007 * 109.46722 * 171.92406 * 3 2 1 23 23 H 0.97000 * 119.99735 * 0.02562 * 6 4 3 24 24 H 1.08995 * 109.48423 * 303.65735 * 9 7 6 25 25 H 1.09003 * 109.47525 * 63.67941 * 9 7 6 26 26 H 1.09004 * 109.69111 * 185.52063 * 10 9 7 27 27 H 1.09005 * 109.78324 * 64.81778 * 10 9 7 28 28 H 0.96998 * 120.00124 * 180.02562 * 13 12 11 29 29 H 1.08999 * 109.62694 * 68.11556 * 18 11 10 30 30 H 1.08994 * 109.62653 * 188.49993 * 18 11 10 31 31 H 1.09001 * 109.47731 * 56.38239 * 19 7 6 32 32 H 1.08999 * 109.49014 * 296.35305 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1487 -0.8753 -1.1185 5 8 2.3608 -1.4445 -1.8439 6 7 4.4738 -1.0262 -1.3127 7 6 4.9626 -1.8782 -2.3996 8 1 4.2914 -2.7280 -2.5235 9 6 5.0044 -1.0700 -3.6976 10 6 5.4259 -1.9885 -4.8551 11 6 6.7383 -2.6447 -4.4874 12 6 7.8129 -2.6088 -5.3505 13 7 8.9446 -3.1897 -5.0163 14 14 7.6616 -1.7353 -6.9947 15 1 8.0577 -0.3126 -6.8378 16 1 6.2554 -1.8083 -7.4665 17 1 8.5512 -2.3902 -7.9871 18 6 6.8397 -3.3466 -3.1513 19 6 6.3653 -2.3837 -2.0580 20 1 -1.0499 0.0000 -0.0003 21 1 3.0095 -0.3828 0.9533 22 1 3.0087 1.0184 -0.1444 23 1 5.1039 -0.5712 -0.7323 24 1 4.0157 -0.6595 -3.9022 25 1 5.7221 -0.2559 -3.5958 26 1 5.5527 -1.3997 -5.7636 27 1 4.6660 -2.7535 -5.0145 28 1 9.7007 -3.1641 -5.6233 29 1 6.2084 -4.2352 -3.1558 30 1 7.8747 -3.6338 -2.9663 31 1 6.3408 -2.9042 -1.1006 32 1 7.0510 -1.5388 -1.9950 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885560987.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:57 Heat of formation + Delta-G solvation = -4.280995 kcal Electronic energy + Delta-G solvation = -14751.018626 eV Core-core repulsion = 12291.198217 eV Total energy + Delta-G solvation = -2459.820409 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.55794 -36.81240 -33.77348 -33.70163 -31.62947 -29.68956 -29.20214 -26.87307 -22.43192 -21.52437 -20.28108 -19.57622 -18.13588 -16.93327 -15.95822 -15.61659 -15.24957 -14.42716 -13.86711 -13.54730 -13.32330 -12.94037 -12.65130 -12.20757 -12.06880 -11.66983 -11.02332 -10.82239 -10.72085 -10.56599 -10.24786 -10.14563 -9.99220 -9.70137 -9.49549 -9.00344 -8.85032 -8.47686 -8.32883 -6.11478 -4.01948 2.67859 2.76307 2.97369 3.26812 3.35978 3.38970 3.71793 4.32781 4.38375 5.04868 5.17417 5.24946 5.31330 5.71838 5.87433 5.92942 6.19232 6.47085 6.47547 6.69861 6.76367 6.88536 6.95031 7.09245 7.23599 7.43534 7.60835 7.63597 7.70644 7.76182 7.92301 8.37238 8.54138 8.95177 9.53852 10.98096 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.053284 B = 0.006439 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.357209 B = 4347.155208 C = 4657.980297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C -0.032 4.032 4 C 0.509 3.491 5 O -0.536 6.536 6 N -0.724 5.724 7 C 0.154 3.846 8 H 0.078 0.922 9 C -0.114 4.114 10 C -0.014 4.014 11 C -0.489 4.489 12 C 0.076 3.924 13 N -0.891 5.891 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.267 1.267 17 H -0.290 1.290 18 C 0.012 3.988 19 C -0.114 4.114 20 H 0.218 0.782 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.395 0.605 24 H 0.036 0.964 25 H 0.051 0.949 26 H 0.031 0.969 27 H 0.020 0.980 28 H 0.264 0.736 29 H 0.006 0.994 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 6.825 9.389 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 C -0.071 4.071 4 C 0.294 3.706 5 O -0.413 6.413 6 N -0.374 5.374 7 C 0.051 3.949 8 H 0.096 0.904 9 C -0.153 4.153 10 C -0.052 4.052 11 C -0.508 4.508 12 C -0.126 4.126 13 N -0.529 5.529 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.192 1.192 17 H -0.216 1.216 18 C -0.026 4.026 19 C -0.152 4.152 20 H 0.235 0.765 21 H 0.131 0.869 22 H 0.131 0.869 23 H 0.228 0.772 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.191 6.354 8.790 13.592 hybrid contribution 0.195 0.792 -0.580 1.001 sum -7.996 7.147 8.211 13.506 Atomic orbital electron populations 1.24772 0.95811 1.00363 1.00175 1.22131 0.93631 1.00814 1.00798 1.18676 0.86910 1.01869 0.99662 1.20274 0.82937 0.82111 0.85265 1.90723 1.55343 1.47813 1.47381 1.46390 1.06115 1.50250 1.34629 1.21070 0.96151 0.92360 0.85315 0.90421 1.21984 0.98587 0.98731 0.95991 1.19800 0.96972 0.94861 0.93575 1.20055 0.95087 1.33679 1.01963 1.24839 0.94826 0.95148 0.97835 1.69833 1.02583 1.43623 1.36812 0.86659 0.77984 0.79781 0.83949 1.20439 1.19163 1.21627 1.19340 0.98487 0.92904 0.91835 1.21924 0.93783 1.00570 0.98925 0.76537 0.86902 0.86880 0.77152 0.94530 0.92994 0.95047 0.96198 0.92590 0.97573 0.92048 0.94572 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 19.25 29.55 0.57 -1.79 16 2 C -0.17 -2.32 12.58 -37.12 -0.47 -2.79 16 3 C -0.03 -0.35 6.19 -30.67 -0.19 -0.54 16 4 C 0.51 8.09 7.77 -10.99 -0.09 8.01 16 5 O -0.54 -11.15 15.69 5.55 0.09 -11.07 16 6 N -0.72 -11.03 5.07 -53.85 -0.27 -11.30 16 7 C 0.15 2.99 2.35 -67.97 -0.16 2.83 16 8 H 0.08 1.70 7.58 -51.93 -0.39 1.30 16 9 C -0.11 -2.40 5.51 -26.41 -0.15 -2.55 16 10 C -0.01 -0.33 5.62 -27.27 -0.15 -0.49 16 11 C -0.49 -12.81 5.50 -98.93 -0.54 -13.36 16 12 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 13 N -0.89 -25.35 12.73 55.43 0.71 -24.64 16 14 Si 0.89 21.17 27.28 -169.99 -4.64 16.53 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.27 -6.25 6.45 56.52 0.36 -5.88 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.01 0.30 5.97 -27.49 -0.16 0.13 16 19 C -0.11 -2.27 5.40 -26.63 -0.14 -2.42 16 20 H 0.22 1.79 7.80 -54.10 -0.42 1.37 16 21 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.40 4.60 8.60 -40.82 -0.35 4.25 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.03 0.74 4.77 -51.93 -0.25 0.50 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 272.31 15.07 4.10 4.10 Total: -1.00 -31.78 272.31 -5.93 -37.71 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.34 Total: -0.34 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -1.58 Total: -10.99 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.43 Total: -35.94 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.64 Total: 16.53 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.78 -5.93 -37.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885560987.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.432 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds