Wall clock time and date at job start Mon Mar 30 2020 20:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35905 * 116.99604 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.05870 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.94246 * 180.02562 * 5 4 3 7 7 C 1.38282 * 120.05845 * 0.02562 * 6 5 4 8 8 C 1.38245 * 120.10978 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.97060 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.46933 * 199.99756 * 9 8 7 11 11 N 1.46902 * 109.47055 * 319.99406 * 9 8 7 12 12 C 1.50701 * 109.47262 * 79.99515 * 9 8 7 13 13 H 1.07994 * 119.99793 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99917 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99940 * 359.97438 * 14 12 9 16 16 Si 1.86796 * 120.00085 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47232 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47314 * 119.99419 * 16 14 12 19 19 H 1.48492 * 109.47159 * 239.99921 * 16 14 12 20 20 C 1.38164 * 120.05768 * 359.67104 * 8 7 6 21 21 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 22 22 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 23 23 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 25 25 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 26 26 H 1.08002 * 120.02961 * 0.02562 * 5 4 3 27 27 H 1.08007 * 119.96925 * 180.02562 * 6 5 4 28 28 H 1.08002 * 119.94739 * 179.97438 * 7 6 5 29 29 H 1.00901 * 110.99645 * 296.04795 * 11 9 8 30 30 H 1.00896 * 111.00003 * 60.00411 * 11 9 8 31 31 H 0.96998 * 119.99667 * 179.97438 * 15 14 12 32 32 H 1.07998 * 120.03046 * 180.30014 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0016 7 6 6.0962 1.8878 0.0032 8 6 5.2551 2.9849 0.0043 9 6 5.8332 4.3767 0.0067 10 1 5.0804 5.0821 0.3588 11 7 7.0002 4.4206 0.8979 12 6 6.2547 4.7480 -1.3917 13 1 6.1180 4.0462 -2.2011 14 6 6.8157 5.9832 -1.6375 15 7 6.9825 6.8376 -0.6517 16 14 7.3388 6.4432 -3.3707 17 1 7.0466 5.3155 -4.2918 18 1 6.5907 7.6484 -3.8102 19 1 8.7955 6.7311 -3.3882 20 6 3.8850 2.8066 -0.0031 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.7886 -0.5729 -0.0003 27 1 6.2280 -0.2462 0.0012 28 1 7.1669 2.0293 0.0045 29 1 6.7325 4.2384 1.8535 30 1 7.7128 3.7749 0.5925 31 1 7.3776 7.7065 -0.8246 32 1 3.2284 3.6640 -0.0071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071500708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:09 Heat of formation + Delta-G solvation = -18.291011 kcal Electronic energy + Delta-G solvation = -14584.142051 eV Core-core repulsion = 12123.714122 eV Total energy + Delta-G solvation = -2460.427929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.71953 -37.47274 -34.25873 -31.88495 -31.54435 -29.79241 -28.50677 -25.97876 -23.90236 -22.22694 -21.89017 -19.86919 -17.37802 -16.39586 -15.94166 -15.66277 -15.29621 -14.53068 -14.19092 -13.54834 -13.23964 -13.16846 -12.82836 -12.58724 -12.34586 -11.72353 -11.69308 -11.22947 -11.04284 -10.82464 -10.64838 -10.47925 -10.37665 -9.76898 -9.21844 -8.42020 -8.08193 -7.68076 -7.06187 -5.85883 -4.00522 1.96512 2.03106 3.34817 3.42841 3.45041 3.47596 4.35903 4.54825 4.89130 4.95667 5.17914 5.30358 5.36308 5.39178 5.48827 5.72257 5.80273 5.91551 5.97205 6.12151 6.31705 6.33672 6.62000 6.81763 6.99600 7.12516 7.35975 7.61914 7.86397 7.93318 8.20597 8.64876 9.02643 9.16625 9.67875 11.18605 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037209 B = 0.006665 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.334446 B = 4200.230230 C = 4445.879258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.320 6.320 4 C 0.121 3.879 5 C -0.234 4.234 6 C -0.087 4.087 7 C -0.157 4.157 8 C -0.034 4.034 9 C 0.252 3.748 10 H 0.048 0.952 11 N -0.808 5.808 12 C -0.529 4.529 13 H 0.054 0.946 14 C 0.083 3.917 15 N -0.847 5.847 16 Si 0.885 3.115 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.152 4.152 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.299 0.701 30 H 0.318 0.682 31 H 0.255 0.745 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -12.878 2.246 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.235 6.235 4 C 0.077 3.923 5 C -0.253 4.253 6 C -0.105 4.105 7 C -0.175 4.175 8 C -0.037 4.037 9 C 0.142 3.858 10 H 0.066 0.934 11 N -0.334 5.334 12 C -0.567 4.567 13 H 0.073 0.927 14 C -0.124 4.124 15 N -0.482 5.482 16 Si 0.713 3.287 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.171 4.171 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.137 0.863 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.529 -11.759 2.081 14.118 hybrid contribution 0.185 -1.081 -0.837 1.379 sum -7.344 -12.840 1.244 14.844 Atomic orbital electron populations 1.21766 0.93200 1.02401 1.03467 1.22658 0.95440 0.82847 1.00993 1.86053 1.19876 1.28349 1.89203 1.19037 0.81457 0.94437 0.97402 1.20948 0.94469 0.97093 1.12782 1.20815 0.94056 0.97050 0.98600 1.20911 1.00029 0.91820 1.04759 1.21659 0.92040 1.00022 0.89972 1.18259 0.89152 0.84574 0.93788 0.93373 1.59223 1.12681 1.58719 1.02765 1.20847 1.43679 1.00544 0.91679 0.92731 1.24950 0.94985 0.96266 0.96152 1.70120 1.41351 1.06507 1.30191 0.86676 0.78276 0.78397 0.85386 1.19892 1.21058 1.21034 1.20418 0.95371 0.94064 1.07233 0.91626 0.91579 0.90765 0.92451 0.92505 0.86705 0.86850 0.86325 0.89117 0.86939 0.93492 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.06 0.67 5.46 37.16 0.20 0.87 16 3 O -0.32 -5.31 10.14 -19.44 -0.20 -5.51 16 4 C 0.12 2.22 6.69 -39.22 -0.26 1.96 16 5 C -0.23 -3.85 9.04 -39.43 -0.36 -4.21 16 6 C -0.09 -1.46 10.04 -39.61 -0.40 -1.86 16 7 C -0.16 -3.03 9.29 -39.56 -0.37 -3.40 16 8 C -0.03 -0.74 4.88 -104.64 -0.51 -1.25 16 9 C 0.25 6.30 2.85 -70.01 -0.20 6.10 16 10 H 0.05 1.32 8.01 -51.92 -0.42 0.91 16 11 N -0.81 -19.00 8.36 -6.64 -0.06 -19.05 16 12 C -0.53 -14.65 8.70 -34.44 -0.30 -14.95 16 13 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.08 2.33 5.39 -17.82 -0.10 2.24 16 15 N -0.85 -24.75 12.77 55.43 0.71 -24.05 16 16 Si 0.88 21.51 29.54 -169.99 -5.02 16.48 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 20 C -0.15 -3.13 9.61 -39.43 -0.38 -3.51 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 25 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 26 H 0.12 1.55 6.30 -52.49 -0.33 1.22 16 27 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 28 H 0.12 2.22 6.66 -52.49 -0.35 1.87 16 29 H 0.30 6.30 9.06 -39.29 -0.36 5.94 16 30 H 0.32 7.07 7.34 -39.29 -0.29 6.78 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.13 2.57 8.04 -52.49 -0.42 2.15 16 LS Contribution 273.61 15.07 4.12 4.12 Total: -1.00 -30.42 273.61 -6.92 -37.34 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -4.19 Total: 9.70 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -2.28 Total: -19.04 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.65 Total: -43.10 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.20 Total: -5.51 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.42 -6.92 -37.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.048 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds