Wall clock time and date at job start Mon Mar 30 2020 20:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47175 * 2 1 4 4 C 1.50700 * 109.47495 * 120.00158 * 2 1 3 5 5 H 1.08001 * 119.99714 * 116.54562 * 4 2 1 6 6 C 1.37879 * 120.00049 * 296.55281 * 4 2 1 7 7 N 1.31512 * 119.99839 * 352.32964 * 6 4 2 8 8 Si 1.86800 * 120.00065 * 172.60612 * 6 4 2 9 9 H 1.48491 * 109.47269 * 264.78692 * 8 6 4 10 10 H 1.48506 * 109.46940 * 24.78922 * 8 6 4 11 11 H 1.48497 * 109.46947 * 144.78195 * 8 6 4 12 12 S 1.81400 * 109.47017 * 240.00510 * 2 1 3 13 13 C 1.81397 * 103.00405 * 64.99875 * 12 2 1 14 14 C 1.50694 * 109.47324 * 180.02562 * 13 12 2 15 15 C 1.38234 * 119.99908 * 269.72462 * 14 13 12 16 16 C 1.38238 * 119.99926 * 179.76748 * 15 14 13 17 17 C 1.38229 * 120.00033 * 0.50727 * 16 15 14 18 18 C 1.38234 * 119.99965 * 359.74390 * 17 16 15 19 19 C 1.38238 * 120.00292 * 0.02562 * 18 17 16 20 20 H 1.08997 * 109.46928 * 175.95270 * 1 2 3 21 21 H 1.09003 * 109.47040 * 295.95123 * 1 2 3 22 22 H 1.09003 * 109.47427 * 55.95305 * 1 2 3 23 23 H 0.97000 * 120.00199 * 180.28055 * 7 6 4 24 24 H 1.09003 * 109.46763 * 300.00303 * 13 12 2 25 25 H 1.09000 * 109.47346 * 59.99551 * 13 12 2 26 26 H 1.08005 * 120.00241 * 359.97438 * 15 14 13 27 27 H 1.07998 * 119.99695 * 180.23250 * 16 15 14 28 28 H 1.08006 * 120.00100 * 179.72673 * 17 16 15 29 29 H 1.08000 * 120.00115 * 179.97438 * 18 17 16 30 30 H 1.07994 * 120.00120 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6065 -1.6199 1.1322 6 6 1.7590 -0.1994 2.4815 7 7 1.1931 0.9818 2.6000 8 14 2.1995 -1.1814 4.0082 9 1 1.0142 -1.9540 4.4590 10 1 3.3090 -2.1166 3.6922 11 1 2.6258 -0.2544 5.0871 12 16 2.1346 -0.8550 -1.4812 13 6 1.5664 0.2154 -2.8309 14 6 1.9973 -0.3693 -4.1513 15 6 3.2156 -0.0145 -4.6997 16 6 3.6130 -0.5546 -5.9085 17 6 2.7875 -1.4415 -6.5740 18 6 1.5670 -1.7923 -6.0281 19 6 1.1716 -1.2559 -4.8170 20 1 -0.3633 -1.0251 -0.0725 21 1 -0.3633 0.4497 0.9241 22 1 -0.3634 0.5754 -0.8515 23 1 1.0044 1.3431 3.4802 24 1 0.4792 0.2883 -2.8037 25 1 2.0000 1.2086 -2.7142 26 1 3.8584 0.6822 -4.1821 27 1 4.5664 -0.2802 -6.3351 28 1 3.0961 -1.8601 -7.5206 29 1 0.9218 -2.4849 -6.5483 30 1 0.2178 -1.5297 -4.3907 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247607.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:17 Heat of formation + Delta-G solvation = 5.090313 kcal Electronic energy + Delta-G solvation = -12245.350200 eV Core-core repulsion = 10130.970370 eV Total energy + Delta-G solvation = -2114.379830 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.00636 -33.97681 -32.58329 -30.75174 -30.39798 -26.75120 -25.18874 -22.42028 -21.53346 -21.00263 -16.85488 -16.28425 -15.38730 -15.03502 -14.92656 -14.56422 -13.54264 -13.30294 -13.15680 -12.62660 -12.53082 -12.26050 -11.90914 -11.13215 -11.06175 -10.91627 -10.83506 -10.56905 -10.50914 -10.08379 -9.29005 -8.78351 -8.75971 -8.44804 -8.35351 -6.65437 -6.17088 -4.21357 1.37022 1.54724 2.82603 3.26197 3.32834 3.38352 3.87511 4.05406 4.36457 4.95526 4.98107 5.10748 5.16762 5.25801 5.48650 5.64973 5.79064 5.93144 6.17250 6.19372 6.56892 6.58690 6.61724 6.76706 6.80444 6.83034 7.13382 7.37635 7.59310 7.80431 8.08680 8.78411 9.41008 10.91605 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.061763 B = 0.005726 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.238082 B = 4888.605010 C = 4984.192040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.108 3.892 3 H 0.047 0.953 4 C -0.505 4.505 5 H 0.066 0.934 6 C 0.069 3.931 7 N -0.889 5.889 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.285 1.285 12 S -0.297 6.297 13 C -0.055 4.055 14 C -0.053 4.053 15 C -0.106 4.106 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.122 4.122 19 C -0.106 4.106 20 H 0.041 0.959 21 H 0.079 0.921 22 H 0.013 0.987 23 H 0.264 0.736 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 -1.646 -13.834 13.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.019 4.019 3 H 0.065 0.935 4 C -0.544 4.544 5 H 0.084 0.916 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.729 3.271 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.211 1.211 12 S -0.067 6.067 13 C -0.202 4.202 14 C -0.054 4.054 15 C -0.126 4.126 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.140 4.140 19 C -0.126 4.126 20 H 0.060 0.940 21 H 0.098 0.902 22 H 0.032 0.968 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.141 0.859 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.987 -2.442 -13.727 13.977 hybrid contribution -0.512 0.698 0.984 1.311 sum 0.475 -1.744 -12.743 12.870 Atomic orbital electron populations 1.22001 0.97222 0.99663 1.00446 1.20806 0.94625 0.97223 0.89270 0.93500 1.20666 1.34934 1.10068 0.88731 0.91613 1.24905 0.94947 0.94792 0.98826 1.69945 1.42726 1.15907 1.24055 0.86401 0.78860 0.79851 0.81944 1.20449 1.19591 1.21061 1.86837 1.76819 1.40154 1.02865 1.22211 1.03357 1.00906 0.93744 1.19448 0.94723 0.96979 0.94281 1.21072 0.95727 1.00198 0.95597 1.21083 0.99561 0.97830 0.95512 1.21082 0.94887 0.98774 1.00007 1.21081 0.96755 1.00146 0.96030 1.21059 0.99945 0.96632 0.94962 0.94004 0.90249 0.96795 0.92613 0.90002 0.90149 0.85920 0.86267 0.86474 0.86281 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.91 37.16 0.33 -2.83 16 2 C 0.11 2.75 2.65 -27.88 -0.07 2.68 16 3 H 0.05 1.28 8.14 -51.92 -0.42 0.86 16 4 C -0.50 -14.03 8.53 -34.44 -0.29 -14.32 16 5 H 0.07 1.87 7.73 -52.49 -0.41 1.46 16 6 C 0.07 1.89 5.19 -17.82 -0.09 1.80 16 7 N -0.89 -24.99 11.93 55.43 0.66 -24.32 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 S -0.30 -6.60 21.05 -107.50 -2.26 -8.87 16 13 C -0.05 -0.97 5.78 36.00 0.21 -0.77 16 14 C -0.05 -0.84 5.14 -104.63 -0.54 -1.38 16 15 C -0.11 -1.54 9.70 -39.58 -0.38 -1.92 16 16 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 17 C -0.13 -1.52 10.05 -39.59 -0.40 -1.91 16 18 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 19 C -0.11 -1.53 9.70 -39.58 -0.38 -1.92 16 20 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.08 2.04 6.57 -51.93 -0.34 1.70 16 22 H 0.01 0.28 7.10 -51.93 -0.37 -0.09 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.08 1.40 7.20 -51.92 -0.37 1.03 16 25 H 0.08 1.38 8.08 -51.92 -0.42 0.96 16 26 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 27 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 271.15 15.07 4.09 4.09 Total: -1.00 -28.75 271.15 -8.96 -37.72 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.00 Total: -0.40 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -2.42 Total: -24.40 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.66 Total: -24.32 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -6.60 SS G_CDS: -2.26 Total: -8.87 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.75 -8.96 -37.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247607.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.805 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds