Wall clock time and date at job start Mon Mar 30 2020 20:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36379 * 120.37228 * 2 1 4 4 C 1.40467 * 119.40944 * 179.76482 * 3 2 1 5 5 O 1.22121 * 119.92672 * 180.28490 * 4 3 2 6 6 N 1.34634 * 120.15381 * 0.52388 * 4 3 2 7 7 C 1.46505 * 119.61616 * 179.73856 * 6 4 3 8 8 C 1.52997 * 109.47212 * 269.72942 * 7 6 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00362 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99850 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47052 * 89.99717 * 13 11 9 15 15 H 1.48495 * 109.47307 * 209.99656 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00164 * 13 11 9 17 17 C 1.36056 * 120.77331 * 359.46404 * 6 4 3 18 18 C 1.35873 * 120.57980 * 0.27728 * 17 6 4 19 19 N 1.40306 * 120.08794 * 179.97438 * 18 17 6 20 20 H 1.09002 * 109.47043 * 269.98249 * 1 2 3 21 21 H 1.08992 * 109.47317 * 29.98226 * 1 2 3 22 22 H 1.09001 * 109.47051 * 149.98626 * 1 2 3 23 23 H 1.08000 * 120.29658 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47068 * 29.73003 * 7 6 4 25 25 H 1.09001 * 109.47372 * 149.73090 * 7 6 4 26 26 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 27 27 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 28 28 H 0.96994 * 119.99814 * 180.02562 * 12 11 9 29 29 H 1.07990 * 119.71018 * 180.25041 * 17 6 4 30 30 H 0.97008 * 119.99495 * 359.97438 * 19 18 17 31 31 H 0.96993 * 120.00264 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1766 0.0000 4 6 3.6010 1.1530 0.0050 5 8 4.2280 2.2010 0.0103 6 7 4.2577 -0.0223 -0.0009 7 6 5.7227 -0.0331 -0.0013 8 6 6.2322 -0.0367 -1.4440 9 6 7.7392 -0.0472 -1.4445 10 1 8.2795 -0.0514 -0.5094 11 6 8.4282 -0.0526 -2.6388 12 7 9.7433 -0.0623 -2.6392 13 14 7.4937 -0.0476 -4.2562 14 1 7.2552 1.3538 -4.6858 15 1 8.2912 -0.7535 -5.2910 16 1 6.1916 -0.7389 -4.0778 17 6 3.5767 -1.2002 -0.0008 18 6 2.2181 -1.2131 -0.0004 19 7 1.5263 -2.4338 -0.0008 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8901 -0.5135 22 1 -0.3633 -0.8899 -0.5141 23 1 1.6675 2.1182 0.0004 24 1 6.0928 0.8541 0.5125 25 1 6.0797 -0.9258 0.5123 26 1 5.8622 -0.9240 -1.9578 27 1 5.8753 0.8559 -1.9577 28 1 10.2279 -0.0657 -3.4794 29 1 4.1209 -2.1330 -0.0014 30 1 2.0181 -3.2700 -0.0018 31 1 0.5564 -2.4416 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086237708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:50 Heat of formation + Delta-G solvation = -8.126942 kcal Electronic energy + Delta-G solvation = -14856.656301 eV Core-core repulsion = 12331.243208 eV Total energy + Delta-G solvation = -2525.413093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.89856 -37.25563 -35.59470 -33.29328 -32.98376 -30.92913 -28.35362 -27.68504 -24.83658 -23.18262 -21.57453 -20.44277 -18.02337 -17.43336 -16.49264 -15.85754 -15.30754 -15.27130 -14.34624 -14.13590 -13.77852 -13.53873 -13.30602 -12.87891 -12.67961 -12.20828 -12.12323 -11.71445 -11.63989 -11.02772 -10.83342 -10.13249 -9.90167 -9.57994 -9.42964 -9.22656 -9.09346 -8.57494 -6.82487 -6.08662 -4.08260 1.06105 2.31034 3.20209 3.31144 3.37736 3.41407 4.00438 4.05800 4.42818 4.69169 4.80015 5.08519 5.25193 5.28774 5.37817 5.48287 5.72208 5.82739 6.05002 6.17856 6.24508 6.26808 6.49017 6.75482 7.16024 7.24538 7.46432 7.68902 7.71309 7.83350 8.44166 8.61550 8.93449 9.52669 11.04196 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.036954 B = 0.007228 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.513168 B = 3872.864288 C = 4041.244739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.026 4.026 3 C -0.223 4.223 4 C 0.497 3.503 5 O -0.560 6.560 6 N -0.473 5.473 7 C 0.105 3.895 8 C -0.021 4.021 9 C -0.522 4.522 10 H 0.076 0.924 11 C 0.072 3.928 12 N -0.899 5.899 13 Si 0.879 3.121 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.267 1.267 17 C 0.052 3.948 18 C 0.085 3.915 19 N -0.884 5.884 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.145 0.855 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.019 0.981 27 H 0.021 0.979 28 H 0.265 0.735 29 H 0.155 0.845 30 H 0.395 0.605 31 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.282 -5.705 5.174 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.032 4.032 3 C -0.245 4.245 4 C 0.298 3.702 5 O -0.444 6.444 6 N -0.184 5.184 7 C -0.015 4.015 8 C -0.059 4.059 9 C -0.560 4.560 10 H 0.094 0.906 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.706 3.294 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.192 1.192 17 C -0.081 4.081 18 C -0.019 4.019 19 N -0.432 5.432 20 H 0.095 0.905 21 H 0.092 0.908 22 H 0.086 0.914 23 H 0.163 0.837 24 H 0.113 0.887 25 H 0.100 0.900 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.172 0.828 30 H 0.223 0.777 31 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -18.619 -4.929 5.063 19.915 hybrid contribution -0.529 -0.464 -0.991 1.215 sum -19.148 -5.393 4.072 20.306 Atomic orbital electron populations 1.20791 0.90809 1.03082 1.02665 1.19848 0.96212 0.91716 0.95429 1.21901 0.93146 0.98597 1.10873 1.16979 0.88919 0.83341 0.81000 1.90975 1.69328 1.30055 1.54023 1.45519 1.10176 1.05486 1.57173 1.22181 0.73813 1.03786 1.01764 1.19864 0.97734 0.97157 0.91118 1.20892 0.88533 1.51725 0.94861 0.90612 1.24943 0.94717 0.94249 0.99086 1.69897 1.06235 1.50573 1.27036 0.86786 0.80206 0.78777 0.83593 1.20072 1.21228 1.19176 1.20995 0.91346 0.90815 1.04955 1.16555 0.89996 0.86927 1.08382 1.42000 1.08088 1.03790 1.89329 0.90510 0.90760 0.91425 0.83724 0.88733 0.89974 0.96305 0.96023 0.92564 0.82798 0.77699 0.77650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.61 36.01 0.35 -0.61 16 2 C -0.03 -0.32 5.90 -104.39 -0.62 -0.94 16 3 C -0.22 -3.45 9.64 -39.41 -0.38 -3.83 16 4 C 0.50 9.88 7.40 -15.48 -0.11 9.77 16 5 O -0.56 -13.51 16.63 4.81 0.08 -13.43 16 6 N -0.47 -8.75 2.59 -119.55 -0.31 -9.06 16 7 C 0.10 2.17 5.28 -4.04 -0.02 2.15 16 8 C -0.02 -0.51 4.37 -27.89 -0.12 -0.64 16 9 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 10 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 11 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 12 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 13 Si 0.88 22.32 27.47 -169.99 -4.67 17.66 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 17 C 0.05 0.76 10.13 -16.53 -0.17 0.59 16 18 C 0.08 1.05 6.71 -83.93 -0.56 0.49 16 19 N -0.88 -7.48 9.03 32.30 0.29 -7.18 16 20 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 22 H 0.07 0.45 6.62 -51.93 -0.34 0.10 16 23 H 0.15 2.00 8.06 -52.49 -0.42 1.57 16 24 H 0.09 2.12 7.37 -51.93 -0.38 1.74 16 25 H 0.08 1.50 8.02 -51.93 -0.42 1.09 16 26 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 27 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.15 1.89 8.04 -52.49 -0.42 1.47 16 30 H 0.40 2.74 8.84 -40.82 -0.36 2.38 16 31 H 0.39 2.55 6.93 -40.82 -0.28 2.27 16 LS Contribution 265.77 15.07 4.01 4.01 Total: -1.00 -34.83 265.77 -5.72 -40.56 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -3.83 Total: 0.86 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.07 Total: -6.33 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.76 Total: -43.33 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.66 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.83 -5.72 -40.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086237708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.432 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds