Wall clock time and date at job start Mon Mar 30 2020 20:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36379 * 120.37228 * 2 1 4 4 C 1.40467 * 119.40944 * 179.76482 * 3 2 1 5 5 O 1.22121 * 119.92672 * 180.28490 * 4 3 2 6 6 N 1.34634 * 120.15381 * 0.52388 * 4 3 2 7 7 C 1.46505 * 119.61616 * 179.73856 * 6 4 3 8 8 C 1.52997 * 109.47212 * 269.72942 * 7 6 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00362 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99850 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47052 * 89.99717 * 13 11 9 15 15 H 1.48495 * 109.47307 * 209.99656 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00164 * 13 11 9 17 17 C 1.36056 * 120.77331 * 359.46404 * 6 4 3 18 18 C 1.35873 * 120.57980 * 0.27728 * 17 6 4 19 19 N 1.40306 * 120.08794 * 179.97438 * 18 17 6 20 20 H 1.09002 * 109.47043 * 269.98249 * 1 2 3 21 21 H 1.08992 * 109.47317 * 29.98226 * 1 2 3 22 22 H 1.09001 * 109.47051 * 149.98626 * 1 2 3 23 23 H 1.08000 * 120.29658 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47068 * 29.73003 * 7 6 4 25 25 H 1.09001 * 109.47372 * 149.73090 * 7 6 4 26 26 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 27 27 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 28 28 H 0.96994 * 119.99814 * 180.02562 * 12 11 9 29 29 H 1.07990 * 119.71018 * 180.25041 * 17 6 4 30 30 H 0.97008 * 119.99495 * 359.97438 * 19 18 17 31 31 H 0.96993 * 120.00264 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1766 0.0000 4 6 3.6010 1.1530 0.0050 5 8 4.2280 2.2010 0.0103 6 7 4.2577 -0.0223 -0.0009 7 6 5.7227 -0.0331 -0.0013 8 6 6.2322 -0.0367 -1.4440 9 6 7.7392 -0.0472 -1.4445 10 1 8.2795 -0.0514 -0.5094 11 6 8.4282 -0.0526 -2.6388 12 7 9.7433 -0.0623 -2.6392 13 14 7.4937 -0.0476 -4.2562 14 1 7.2552 1.3538 -4.6858 15 1 8.2912 -0.7535 -5.2910 16 1 6.1916 -0.7389 -4.0778 17 6 3.5767 -1.2002 -0.0008 18 6 2.2181 -1.2131 -0.0004 19 7 1.5263 -2.4338 -0.0008 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8901 -0.5135 22 1 -0.3633 -0.8899 -0.5141 23 1 1.6675 2.1182 0.0004 24 1 6.0928 0.8541 0.5125 25 1 6.0797 -0.9258 0.5123 26 1 5.8622 -0.9240 -1.9578 27 1 5.8753 0.8559 -1.9577 28 1 10.2279 -0.0657 -3.4794 29 1 4.1209 -2.1330 -0.0014 30 1 2.0181 -3.2700 -0.0018 31 1 0.5564 -2.4416 -0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086237708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:49 Heat of formation + Delta-G solvation = -33.752221 kcal Electronic energy + Delta-G solvation = -14857.767496 eV Core-core repulsion = 12331.243208 eV Total energy + Delta-G solvation = -2526.524288 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.20915 -38.49611 -37.09015 -35.17764 -34.14115 -32.71484 -29.63008 -28.81326 -26.59182 -24.29864 -23.25838 -21.95378 -19.32072 -19.11580 -18.00940 -17.14325 -16.84345 -16.27488 -16.13547 -15.55739 -15.12053 -14.90824 -14.77810 -14.34110 -13.96533 -13.77093 -13.21537 -13.13863 -12.99410 -12.58295 -12.48871 -12.06063 -11.84437 -11.60072 -11.03231 -10.85430 -10.83106 -10.12601 -8.36521 -7.96170 -6.41766 -0.08718 1.09995 1.29196 1.31972 1.42251 1.85877 2.29313 2.74415 2.98278 3.13335 3.71982 3.84660 3.96695 4.19392 4.33119 4.38933 4.56973 4.65724 4.81893 4.91951 4.93517 5.06267 5.21758 5.27569 5.32987 5.50396 5.68086 6.15984 6.32596 6.63673 6.65566 7.19184 7.20468 7.23719 8.79652 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.036954 B = 0.007228 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.513168 B = 3872.864288 C = 4041.244739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.005 4.005 3 C -0.245 4.245 4 C 0.473 3.527 5 O -0.627 6.627 6 N -0.475 5.475 7 C 0.116 3.884 8 C -0.010 4.010 9 C -0.533 4.533 10 H 0.044 0.956 11 C 0.014 3.986 12 N -0.942 5.942 13 Si 0.945 3.055 14 H -0.278 1.278 15 H -0.272 1.272 16 H -0.249 1.249 17 C 0.017 3.983 18 C 0.110 3.890 19 N -0.863 5.863 20 H 0.098 0.902 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.155 0.845 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.033 0.967 27 H -0.002 1.002 28 H 0.269 0.731 29 H 0.178 0.822 30 H 0.407 0.593 31 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.878 -7.939 4.550 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.012 4.012 3 C -0.267 4.267 4 C 0.277 3.723 5 O -0.517 6.517 6 N -0.185 5.185 7 C -0.005 4.005 8 C -0.048 4.048 9 C -0.571 4.571 10 H 0.062 0.938 11 C -0.184 4.184 12 N -0.582 5.582 13 Si 0.768 3.232 14 H -0.204 1.204 15 H -0.197 1.197 16 H -0.173 1.173 17 C -0.114 4.114 18 C 0.004 3.996 19 N -0.412 5.412 20 H 0.117 0.883 21 H 0.102 0.898 22 H 0.110 0.890 23 H 0.173 0.827 24 H 0.084 0.916 25 H 0.125 0.875 26 H 0.052 0.948 27 H 0.017 0.983 28 H 0.078 0.922 29 H 0.195 0.805 30 H 0.237 0.763 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -22.288 -7.257 4.453 23.859 hybrid contribution 0.489 0.121 -0.703 0.864 sum -21.799 -7.135 3.751 23.242 Atomic orbital electron populations 1.20956 0.87016 1.04836 1.04503 1.20311 0.98704 0.90423 0.91760 1.21863 0.90983 1.00579 1.13232 1.17694 0.90552 0.82867 0.81208 1.90919 1.70694 1.32152 1.57905 1.45291 1.08968 1.06649 1.57594 1.21776 0.75952 1.03646 0.99129 1.19680 0.95019 0.96417 0.93680 1.21191 0.90781 1.51295 0.93854 0.93767 1.25856 0.95594 0.93844 1.03077 1.70025 1.07975 1.51837 1.28343 0.85746 0.79642 0.78810 0.78963 1.20393 1.19705 1.17265 1.21418 0.92540 0.90120 1.07354 1.16718 0.89455 0.88410 1.04976 1.42010 1.08958 1.02790 1.87427 0.88323 0.89832 0.88966 0.82731 0.91578 0.87459 0.94838 0.98337 0.92155 0.80533 0.76294 0.75852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.61 71.24 0.68 -0.63 16 2 C -0.01 -0.11 5.90 -19.72 -0.12 -0.23 16 3 C -0.24 -7.36 9.64 22.38 0.22 -7.15 16 4 C 0.47 19.29 7.40 84.81 0.63 19.92 16 5 O -0.63 -32.15 16.63 -5.71 -0.09 -32.24 16 6 N -0.48 -17.57 2.59 -650.28 -1.69 -19.26 16 7 C 0.12 4.97 5.28 86.38 0.46 5.42 16 8 C -0.01 -0.50 4.37 29.85 0.13 -0.37 16 9 C -0.53 -31.62 9.66 25.60 0.25 -31.37 16 10 H 0.04 2.82 7.99 -2.91 -0.02 2.79 16 11 C 0.01 0.86 5.47 84.65 0.46 1.33 16 12 N -0.94 -59.72 13.96 21.45 0.30 -59.42 16 13 Si 0.94 46.09 27.47 68.60 1.88 47.98 16 14 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 17 C 0.02 0.46 10.13 83.49 0.85 1.30 16 18 C 0.11 2.31 6.71 37.81 0.25 2.56 16 19 N -0.86 -10.07 9.03 -51.71 -0.47 -10.53 16 20 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 21 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 22 H 0.09 0.64 6.62 -2.39 -0.02 0.62 16 23 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 24 H 0.07 3.17 7.37 -2.39 -0.02 3.15 16 25 H 0.11 3.94 8.02 -2.39 -0.02 3.92 16 26 H 0.03 1.57 7.20 -2.39 -0.02 1.56 16 27 H 0.00 -0.10 7.57 -2.39 -0.02 -0.12 16 28 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16 29 H 0.18 3.78 8.04 -2.92 -0.02 3.76 16 30 H 0.41 3.54 8.84 -92.70 -0.82 2.72 16 31 H 0.41 2.80 6.93 -92.71 -0.64 2.16 16 Total: -1.00 -80.03 265.77 3.38 -76.65 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -0.36 Total: 6.04 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 3.81 Total: -9.21 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -1.85 Total: -89.21 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.09 Total: -32.24 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.98 kcal Total: -80.03 3.38 -76.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086237708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.900 kcal (2) G-P(sol) polarization free energy of solvation -80.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds