Wall clock time and date at job start Mon Mar 30 2020 20:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29851 * 127.31294 * 2 1 4 4 O 1.20572 * 112.93434 * 180.02562 * 3 2 1 5 5 C 1.33757 * 113.30754 * 359.97438 * 4 3 2 6 6 C 1.50697 * 127.06707 * 180.02562 * 5 4 3 7 7 H 1.08991 * 110.63301 * 181.62821 * 6 5 4 8 8 C 1.55150 * 110.70422 * 304.92352 * 6 5 4 9 9 C 1.54911 * 101.65059 * 154.03463 * 8 6 5 10 10 N 1.47847 * 104.79548 * 322.92833 * 9 8 6 11 11 C 1.47445 * 108.56717 * 24.09556 * 10 9 8 12 12 C 1.39662 * 105.87075 * 0.02562 * 5 4 3 13 13 C 1.41476 * 128.74027 * 180.26394 * 12 5 4 14 14 H 1.08000 * 120.00323 * 326.66915 * 13 12 5 15 15 C 1.39736 * 119.99752 * 146.67004 * 13 12 5 16 16 N 1.31006 * 119.99895 * 341.36700 * 15 13 12 17 17 Si 1.86794 * 119.99671 * 161.36979 * 15 13 12 18 18 H 1.48503 * 109.47362 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47099 * 119.99764 * 17 15 13 20 20 H 1.48505 * 109.47178 * 239.99799 * 17 15 13 21 21 H 1.08997 * 109.46755 * 266.61166 * 1 2 3 22 22 H 1.08991 * 109.47264 * 26.61044 * 1 2 3 23 23 H 1.09000 * 109.47005 * 146.61254 * 1 2 3 24 24 H 1.08997 * 110.99026 * 272.12525 * 8 6 5 25 25 H 1.09000 * 110.98887 * 35.93933 * 8 6 5 26 26 H 1.09004 * 110.36702 * 204.10022 * 9 8 6 27 27 H 1.08994 * 110.37253 * 81.75709 * 9 8 6 28 28 H 1.00902 * 110.99872 * 261.83250 * 10 9 8 29 29 H 1.08998 * 109.88909 * 239.60316 * 11 10 9 30 30 H 1.09003 * 110.02001 * 118.49306 * 11 10 9 31 31 H 0.97006 * 119.99524 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2941 1.0327 0.0000 4 8 3.4621 0.7333 -0.0005 5 6 3.6697 -0.5880 -0.0004 6 6 4.9986 -1.2987 -0.0003 7 1 4.8564 -2.3789 -0.0292 8 6 5.8740 -0.8249 -1.1904 9 6 7.3024 -1.0942 -0.6546 10 7 7.2346 -0.7624 0.7846 11 6 5.8352 -0.8911 1.2306 12 6 2.4019 -1.1738 -0.0003 13 6 2.0610 -2.5469 0.0049 14 1 2.6903 -3.2615 -0.5047 15 6 0.9101 -2.9785 0.6695 16 7 0.3512 -2.2144 1.5751 17 14 0.1686 -4.6450 0.2667 18 1 0.9824 -5.3081 -0.7837 19 1 0.1541 -5.4888 1.4886 20 1 -1.2206 -4.4628 -0.2255 21 1 -0.3633 -0.0607 1.0259 22 1 -0.3633 0.9187 -0.4603 23 1 -0.3633 -0.8581 -0.5655 24 1 5.6736 -1.4175 -2.0829 25 1 5.7243 0.2368 -1.3868 26 1 8.0241 -0.4513 -1.1587 27 1 7.5671 -2.1427 -0.7903 28 1 7.5853 0.1676 0.9582 29 1 5.4809 0.0632 1.6203 30 1 5.7583 -1.6578 2.0016 31 1 -0.4475 -2.5143 2.0367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639391.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:27 Heat of formation + Delta-G solvation = 21.195009 kcal Electronic energy + Delta-G solvation = -15348.835073 eV Core-core repulsion = 12824.693475 eV Total energy + Delta-G solvation = -2524.141598 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.73402 -39.30223 -36.30225 -33.96969 -33.16017 -30.40321 -29.69640 -29.08077 -27.34284 -23.02704 -22.65097 -22.27576 -19.76233 -19.23260 -17.96657 -17.66413 -16.75995 -16.52287 -16.21868 -14.93718 -14.58644 -14.51621 -13.99152 -13.89692 -13.59925 -13.22489 -13.13031 -12.95101 -12.73167 -12.40750 -12.30007 -12.08943 -11.87704 -11.68476 -11.28063 -10.99494 -10.09822 -9.66282 -9.29844 -8.59841 -6.35573 1.07301 1.39396 1.42809 1.55776 1.93322 2.25547 2.88322 3.10256 3.42663 3.81570 3.94305 3.95416 4.19397 4.32473 4.41550 4.57136 4.76234 4.84836 4.93685 4.98292 5.01245 5.06214 5.19792 5.24411 5.33227 5.41935 5.58890 5.69277 5.88275 6.29954 6.52481 6.72966 6.92825 8.10528 8.43779 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.009912 C = 0.008103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.026856 B = 2824.306262 C = 3454.575263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 C -0.036 4.036 3 N -0.411 5.411 4 O 0.066 5.934 5 C -0.218 4.218 6 C 0.016 3.984 7 H 0.087 0.913 8 C -0.143 4.143 9 C 0.054 3.946 10 N -0.684 5.684 11 C 0.061 3.939 12 C 0.000 4.000 13 C -0.481 4.481 14 H 0.080 0.920 15 C 0.044 3.956 16 N -0.832 5.832 17 Si 0.975 3.025 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.265 1.265 21 H 0.072 0.928 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.346 0.654 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 -1.201 -3.009 6.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.195 4.195 3 N -0.119 5.119 4 O -0.001 6.001 5 C -0.280 4.280 6 C -0.004 4.004 7 H 0.105 0.895 8 C -0.182 4.182 9 C -0.075 4.075 10 N -0.313 5.313 11 C -0.069 4.069 12 C -0.005 4.005 13 C -0.512 4.512 14 H 0.098 0.902 15 C -0.170 4.170 16 N -0.459 5.459 17 Si 0.797 3.203 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.190 1.190 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.162 0.838 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.925 -0.530 -2.593 6.489 hybrid contribution -1.250 -0.520 -0.282 1.383 sum 4.675 -1.050 -2.876 5.588 Atomic orbital electron populations 1.19712 0.86304 1.00139 1.02200 1.25063 0.98652 0.89631 1.06150 1.72959 0.90648 1.25919 1.22392 1.84009 1.19871 1.25008 1.71214 1.24280 0.97384 0.82172 1.24134 1.20305 0.86484 0.97631 0.96013 0.89473 1.23200 0.95975 1.01200 0.97864 1.22924 0.95018 1.02670 0.86870 1.61776 1.18531 1.33309 1.17651 1.22522 0.87170 1.00349 0.96815 1.20045 0.89168 0.94576 0.96711 1.18707 1.09348 0.90639 1.32462 0.90243 1.26461 0.95701 1.02506 0.92350 1.69982 1.18706 1.39396 1.17825 0.85254 0.78612 0.77349 0.79094 1.18353 1.19524 1.19016 0.90962 0.92488 0.92299 0.90263 0.92114 0.88950 0.89814 0.83813 0.93970 0.91304 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.20 8.68 71.24 0.62 -0.59 16 2 C -0.04 -1.89 7.22 45.33 0.33 -1.56 16 3 N -0.41 -21.63 11.96 -43.72 -0.52 -22.16 16 4 O 0.07 3.32 10.98 74.70 0.82 4.14 16 5 C -0.22 -10.59 6.11 26.03 0.16 -10.43 16 6 C 0.02 0.64 3.39 -10.36 -0.04 0.60 16 7 H 0.09 3.54 7.80 -2.39 -0.02 3.52 16 8 C -0.14 -4.47 6.51 31.98 0.21 -4.26 16 9 C 0.05 1.34 7.57 86.77 0.66 2.00 16 10 N -0.68 -19.12 7.39 -504.42 -3.73 -22.85 16 11 C 0.06 2.14 7.17 86.65 0.62 2.77 16 12 C 0.00 -0.01 5.84 -19.66 -0.11 -0.13 16 13 C -0.48 -25.28 9.04 23.43 0.21 -25.06 16 14 H 0.08 4.05 7.86 -2.91 -0.02 4.02 16 15 C 0.04 2.15 4.74 85.18 0.40 2.55 16 16 N -0.83 -42.25 10.33 21.80 0.23 -42.02 16 17 Si 0.98 37.54 29.60 68.60 2.03 39.57 16 18 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 19 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 20 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 21 H 0.07 3.42 7.13 -2.39 -0.02 3.41 16 22 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.06 2.71 7.69 -2.39 -0.02 2.69 16 24 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.06 1.99 8.01 -2.39 -0.02 1.97 16 26 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.35 8.35 8.91 -89.69 -0.80 7.55 16 29 H 0.04 1.57 7.78 -2.39 -0.02 1.55 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.29 13.15 8.30 -92.70 -0.77 12.38 16 Total: -1.00 -59.36 262.04 2.22 -57.13 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.34 Total: 20.30 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 3.06 Total: -34.12 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -4.03 Total: -87.03 kcal Atomic # 8 Polarization: 3.32 SS G_CDS: 0.82 Total: 4.14 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -59.36 2.22 -57.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639391.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.329 kcal (2) G-P(sol) polarization free energy of solvation -59.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds