Wall clock time and date at job start Mon Mar 30 2020 20:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35457 * 117.00231 * 2 1 4 4 N 1.32333 * 119.19504 * 0.02562 * 3 2 1 5 5 C 1.32279 * 120.75958 * 180.02562 * 4 3 2 6 6 C 1.38618 * 119.17520 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.73978 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.46912 * 265.00285 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46725 * 60.00489 * 13 11 9 15 15 H 1.48505 * 109.46988 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47116 * 300.00464 * 13 11 9 17 17 C 1.38563 * 118.51909 * 0.27669 * 6 5 4 18 18 C 1.50706 * 120.41434 * 179.70677 * 17 6 5 19 19 N 1.32308 * 119.19727 * 179.97438 * 3 2 1 20 20 H 1.08992 * 109.47147 * 59.99328 * 1 2 3 21 21 H 1.08990 * 109.47188 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46757 * 299.99824 * 1 2 3 23 23 H 1.07999 * 120.41545 * 179.97438 * 5 4 3 24 24 H 1.09002 * 109.47152 * 145.00057 * 7 6 5 25 25 H 1.09001 * 109.46980 * 25.00158 * 7 6 5 26 26 H 1.09001 * 109.47194 * 299.99742 * 8 7 6 27 27 H 1.08992 * 109.47399 * 59.99914 * 8 7 6 28 28 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 29 29 H 1.08994 * 109.47144 * 89.99591 * 18 17 6 30 30 H 1.08992 * 109.47408 * 210.00205 * 18 17 6 31 31 H 1.09003 * 109.46332 * 329.99850 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3078 2.3065 0.0005 5 6 1.8760 3.5011 0.0000 6 6 3.2592 3.5914 -0.0005 7 6 3.9434 4.9342 -0.0005 8 6 4.2863 5.3318 -1.4376 9 6 4.9700 6.6748 -1.4376 10 1 5.1430 7.1927 -0.5058 11 6 5.3756 7.2419 -2.6271 12 7 5.1654 6.6110 -3.7618 13 14 6.2224 8.9070 -2.6273 14 1 7.4689 8.8283 -1.8239 15 1 6.5553 9.2929 -4.0221 16 1 5.3157 9.9234 -2.0359 17 6 3.9987 2.4197 -0.0064 18 6 5.5050 2.4681 -0.0138 19 7 3.3661 1.2576 0.0005 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.2697 4.3949 0.0000 24 1 4.8587 4.8756 0.5886 25 1 3.2787 5.6807 0.4343 26 1 4.9511 4.5853 -1.8723 27 1 3.3712 5.3904 -2.0266 28 1 5.4510 7.0098 -4.5986 29 1 5.8733 2.4780 1.0120 30 1 5.8942 1.5914 -0.5312 31 1 5.8368 3.3703 -0.5277 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261215654.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:39 Heat of formation + Delta-G solvation = -25.244866 kcal Electronic energy + Delta-G solvation = -14642.297617 eV Core-core repulsion = 12116.142235 eV Total energy + Delta-G solvation = -2526.155382 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.32727 -39.54136 -36.30534 -35.32022 -34.30077 -31.35612 -29.56322 -28.42434 -26.84649 -24.64875 -23.61392 -22.13388 -19.50438 -19.00958 -18.49862 -17.43973 -16.49693 -16.06091 -15.58830 -15.35798 -15.15466 -14.79772 -14.26207 -14.04840 -13.76556 -13.36201 -13.09134 -12.89027 -12.75422 -12.72138 -12.26621 -12.06690 -11.80288 -11.58603 -11.47437 -11.13558 -10.51026 -10.22132 -9.65321 -8.15039 -6.26056 -0.02813 0.02975 1.46011 1.47765 1.55450 1.58415 2.45295 2.67930 3.03345 3.19321 3.56754 3.65787 3.95377 4.08116 4.38289 4.40813 4.56874 4.67829 4.70808 4.72990 4.88198 4.94301 5.02430 5.19518 5.32304 5.57975 5.73308 5.75669 5.89994 6.11762 6.26952 6.91560 7.02483 7.43834 8.96159 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.052707 B = 0.005777 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.110495 B = 4845.832853 C = 5015.160643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.469 3.531 4 N -0.573 5.573 5 C 0.180 3.820 6 C -0.213 4.213 7 C -0.048 4.048 8 C 0.034 3.966 9 C -0.537 4.537 10 H 0.069 0.931 11 C 0.001 3.999 12 N -0.936 5.936 13 Si 0.961 3.039 14 H -0.265 1.265 15 H -0.290 1.290 16 H -0.267 1.267 17 C 0.203 3.797 18 C -0.107 4.107 19 N -0.549 5.549 20 H 0.058 0.942 21 H 0.134 0.866 22 H 0.064 0.936 23 H 0.195 0.805 24 H 0.080 0.920 25 H 0.078 0.922 26 H -0.004 1.004 27 H -0.014 1.014 28 H 0.262 0.738 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 -7.758 8.981 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.211 6.211 3 C 0.166 3.834 4 N -0.303 5.303 5 C 0.016 3.984 6 C -0.218 4.218 7 C -0.087 4.087 8 C -0.003 4.003 9 C -0.575 4.575 10 H 0.087 0.913 11 C -0.196 4.196 12 N -0.576 5.576 13 Si 0.786 3.214 14 H -0.190 1.190 15 H -0.216 1.216 16 H -0.192 1.192 17 C 0.058 3.942 18 C -0.164 4.164 19 N -0.276 5.276 20 H 0.077 0.923 21 H 0.152 0.848 22 H 0.083 0.917 23 H 0.212 0.788 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.015 0.985 27 H 0.005 0.995 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.194 -8.974 8.810 14.018 hybrid contribution 0.432 1.562 -0.592 1.725 sum -5.761 -7.413 8.218 12.477 Atomic orbital electron populations 1.23234 0.73951 1.05378 1.02780 1.86036 1.25212 1.22366 1.87460 1.20882 0.86330 0.85478 0.90661 1.68061 1.41178 0.99197 1.21870 1.23309 0.92368 0.94691 0.88041 1.21748 0.96121 0.98510 1.05381 1.20403 0.99810 0.89858 0.98581 1.18962 0.94723 0.95065 0.91528 1.21662 1.37908 1.04658 0.93234 0.91321 1.25930 0.96818 1.01585 0.95303 1.70100 1.48596 1.40480 0.98423 0.85556 0.79304 0.79598 0.76919 1.18966 1.21567 1.19172 1.21839 0.98594 0.85961 0.87801 1.20942 0.85896 1.04565 1.05017 1.67384 1.08263 1.30740 1.21197 0.92317 0.84776 0.91723 0.78805 0.90151 0.90320 0.98522 0.99523 0.92978 0.87219 0.89669 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 10.36 113.37 1.17 2.03 16 2 O -0.31 -9.60 10.55 -87.55 -0.92 -10.53 16 3 C 0.47 16.68 8.49 180.57 1.53 18.21 16 4 N -0.57 -19.20 9.23 -313.46 -2.89 -22.10 16 5 C 0.18 5.83 10.99 84.72 0.93 6.76 16 6 C -0.21 -7.46 5.17 -19.69 -0.10 -7.56 16 7 C -0.05 -1.77 4.62 29.85 0.14 -1.63 16 8 C 0.03 1.68 4.79 29.85 0.14 1.82 16 9 C -0.54 -28.42 9.11 25.60 0.23 -28.19 16 10 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 11 C 0.00 0.07 5.46 84.66 0.46 0.54 16 12 N -0.94 -55.61 13.29 21.45 0.28 -55.32 16 13 Si 0.96 42.47 29.54 68.60 2.03 44.49 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 15 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 17 C 0.20 7.14 6.82 42.57 0.29 7.43 16 18 C -0.11 -3.18 9.48 71.24 0.68 -2.50 16 19 N -0.55 -20.43 10.40 -301.51 -3.14 -23.57 16 20 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 21 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.06 1.28 8.09 -2.38 -0.02 1.26 16 23 H 0.20 5.13 8.06 -2.91 -0.02 5.11 16 24 H 0.08 2.74 7.12 -2.39 -0.02 2.72 16 25 H 0.08 2.66 8.07 -2.39 -0.02 2.64 16 26 H 0.00 -0.19 6.94 -2.39 -0.02 -0.21 16 27 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.09 2.85 5.59 -2.39 -0.01 2.83 16 Total: -1.00 -66.25 270.18 1.96 -64.30 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.12 Total: 5.81 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.48 Total: -3.09 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -5.74 Total: -100.99 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.92 Total: -10.53 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.25 1.96 -64.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261215654.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.052 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds