Wall clock time and date at job start Mon Mar 30 2020 20:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47025 * 2 1 4 4 F 1.39900 * 109.47118 * 239.99359 * 2 1 3 5 5 C 1.50697 * 109.46854 * 119.99883 * 2 1 3 6 6 C 1.38261 * 120.00205 * 64.99461 * 5 2 1 7 7 C 1.38211 * 120.00268 * 179.97438 * 6 5 2 8 8 C 1.38256 * 119.99788 * 0.02650 * 7 6 5 9 9 C 1.38211 * 120.00234 * 359.95607 * 8 7 6 10 10 C 1.50703 * 120.00060 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47152 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46912 * 300.00088 * 10 9 8 13 13 C 1.50699 * 109.47227 * 59.99977 * 10 9 8 14 14 H 1.07999 * 120.00019 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00129 * 180.02562 * 13 10 9 16 16 N 1.31519 * 119.99723 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99900 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47112 * 60.00201 * 17 15 13 19 19 H 1.48503 * 109.47000 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46939 * 299.99464 * 17 15 13 21 21 C 1.38219 * 120.00352 * 245.21051 * 5 2 1 22 22 H 1.09001 * 109.46932 * 300.00785 * 1 2 3 23 23 H 1.09003 * 109.46581 * 59.99877 * 1 2 3 24 24 H 1.08993 * 109.47664 * 179.97438 * 1 2 3 25 25 H 1.07998 * 119.99871 * 0.02562 * 6 5 2 26 26 H 1.07995 * 120.00293 * 180.02562 * 7 6 5 27 27 H 1.08009 * 119.99925 * 179.97438 * 8 7 6 28 28 H 1.09001 * 109.47194 * 299.99742 * 12 10 9 29 29 H 1.08992 * 109.47399 * 59.99914 * 12 10 9 30 30 H 1.09004 * 109.46724 * 180.02562 * 12 10 9 31 31 H 0.97003 * 119.99231 * 179.97438 * 16 15 13 32 32 H 1.08001 * 119.99221 * 0.03976 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2305 6 6 1.7855 -2.0604 1.3985 7 6 2.2466 -2.7120 2.5268 8 6 2.9541 -2.0138 3.4877 9 6 3.2012 -0.6643 3.3196 10 6 3.9729 0.0966 4.3667 11 1 4.0676 1.1390 4.0623 12 6 3.2313 0.0202 5.7028 13 6 5.3447 -0.5085 4.5183 14 1 5.6292 -1.3593 3.9170 15 6 6.2364 0.0234 5.4256 16 7 5.8898 1.0591 6.1583 17 14 7.9366 -0.7272 5.6140 18 1 8.6568 -0.6531 4.3176 19 1 8.6971 0.0227 6.6458 20 1 7.8076 -2.1474 6.0283 21 6 2.7358 -0.0115 2.1933 22 1 -0.3633 0.5140 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.2331 -2.6059 0.6477 26 1 2.0542 -3.7666 2.6578 27 1 3.3141 -2.5229 4.3696 28 1 2.2391 0.4579 5.5931 29 1 3.1370 -1.0222 6.0069 30 1 3.7893 0.5710 6.4600 31 1 6.5171 1.4330 6.7968 32 1 2.9250 1.0440 2.0640 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260546708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:50 Heat of formation + Delta-G solvation = -48.123929 kcal Electronic energy + Delta-G solvation = -14748.109421 eV Core-core repulsion = 12201.041967 eV Total energy + Delta-G solvation = -2547.067454 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.112 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.45802 -38.83975 -34.69739 -32.79270 -31.30829 -29.42474 -27.97136 -25.14891 -23.82951 -22.18919 -21.34142 -19.09494 -16.55803 -16.12984 -15.99020 -15.14415 -14.88825 -14.62203 -14.10350 -13.51049 -12.85932 -12.80099 -12.45552 -12.28327 -12.06793 -11.54954 -11.44410 -11.12776 -10.93388 -10.86158 -10.72498 -10.45342 -10.27721 -10.04174 -9.40159 -9.04926 -8.39770 -8.28433 -7.83170 -6.03571 -4.10459 1.88877 2.07881 3.30454 3.34818 3.38224 4.32814 4.46397 4.68449 4.79240 5.00712 5.23464 5.27519 5.50466 5.54839 5.67713 5.87095 5.98450 6.03943 6.13739 6.30343 6.49350 6.67229 6.81667 6.95305 7.03978 7.16821 7.17507 7.31382 7.64482 7.71053 7.93674 8.06562 8.36489 8.91948 9.54353 11.02099 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039350 B = 0.006795 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.388171 B = 4119.629381 C = 4175.336152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.135 3.865 3 H 0.087 0.913 4 F -0.214 7.214 5 C -0.134 4.134 6 C -0.125 4.125 7 C -0.128 4.128 8 C -0.103 4.103 9 C -0.031 4.031 10 C 0.070 3.930 11 H 0.035 0.965 12 C -0.132 4.132 13 C -0.509 4.509 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.114 4.114 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.123 0.877 28 H 0.008 0.992 29 H 0.028 0.972 30 H 0.086 0.914 31 H 0.261 0.739 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 -2.497 -7.625 12.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.099 3.901 3 H 0.105 0.895 4 F -0.195 7.195 5 C -0.134 4.134 6 C -0.144 4.144 7 C -0.146 4.146 8 C -0.121 4.121 9 C -0.031 4.031 10 C 0.052 3.948 11 H 0.053 0.947 12 C -0.190 4.190 13 C -0.547 4.547 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.132 4.132 22 H 0.095 0.905 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.141 0.859 28 H 0.027 0.973 29 H 0.047 0.953 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.915 -2.384 -7.511 11.899 hybrid contribution 1.034 -0.461 0.083 1.135 sum -7.882 -2.846 -7.428 11.198 Atomic orbital electron populations 1.22357 0.94026 1.03511 1.03088 1.20329 0.94467 0.95312 0.80031 0.89517 1.92811 1.90419 1.83606 1.52641 1.20000 1.02004 0.95013 0.96422 1.20641 1.01914 0.93817 0.97986 1.21058 0.99526 0.99257 0.94730 1.21158 0.97474 0.94524 0.98934 1.20670 0.93046 0.94145 0.95209 1.17904 0.92704 0.94979 0.89214 0.94739 1.21788 0.96493 0.99652 1.01021 1.21079 0.97094 1.15196 1.21330 0.92498 1.24957 0.98450 0.94922 0.95577 1.69877 1.35589 1.23085 1.24343 0.86631 0.84134 0.79287 0.77837 1.20242 1.21244 1.20221 1.20970 0.98368 0.99606 0.94252 0.90536 0.91685 0.91459 0.87144 0.86871 0.85908 0.97262 0.95254 0.89580 0.92860 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 9.51 37.16 0.35 -1.57 16 2 C 0.13 1.89 4.18 -27.88 -0.12 1.77 16 3 H 0.09 1.10 7.89 -51.93 -0.41 0.69 16 4 F -0.21 -3.37 16.93 2.25 0.04 -3.33 16 5 C -0.13 -2.26 5.04 -104.62 -0.53 -2.79 16 6 C -0.13 -2.06 9.15 -39.58 -0.36 -2.42 16 7 C -0.13 -2.18 10.05 -39.58 -0.40 -2.57 16 8 C -0.10 -2.04 8.71 -39.58 -0.34 -2.39 16 9 C -0.03 -0.66 4.74 -104.63 -0.50 -1.15 16 10 C 0.07 1.74 2.48 -92.92 -0.23 1.51 16 11 H 0.03 0.91 7.88 -51.93 -0.41 0.50 16 12 C -0.13 -3.13 8.78 37.16 0.33 -2.80 16 13 C -0.51 -13.78 8.24 -34.44 -0.28 -14.07 16 14 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.11 -2.18 9.30 -39.58 -0.37 -2.54 16 22 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.74 7.70 -51.93 -0.40 0.34 16 25 H 0.11 1.58 7.88 -52.49 -0.41 1.16 16 26 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.12 2.45 7.58 -52.48 -0.40 2.05 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.03 0.66 7.39 -51.93 -0.38 0.28 16 30 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.12 2.09 7.84 -52.49 -0.41 1.68 16 LS Contribution 273.20 15.07 4.12 4.12 Total: -1.00 -28.31 273.20 -7.14 -35.45 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.36 Total: -0.56 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -2.54 Total: -27.42 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.63 Total: -24.40 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.31 -7.14 -35.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260546708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.671 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds