Wall clock time and date at job start Mon Mar 30 2020 20:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00164 * 2 1 4 4 N 1.46900 * 109.46694 * 123.19081 * 3 2 1 5 5 C 1.46899 * 111.00206 * 66.69756 * 4 3 2 6 6 C 1.50697 * 109.47239 * 66.04185 * 5 4 3 7 7 H 1.08002 * 120.00134 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00132 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99908 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99953 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47283 * 59.99844 * 10 8 6 12 12 H 1.48504 * 109.46759 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46751 * 299.99249 * 10 8 6 14 14 C 1.46905 * 111.00195 * 302.74342 * 4 3 2 15 15 C 1.50703 * 109.46947 * 288.65713 * 14 4 3 16 16 C 1.34330 * 126.16524 * 93.93323 * 15 14 4 17 17 O 1.34744 * 107.11187 * 179.81025 * 16 15 14 18 18 C 1.33960 * 107.75838 * 0.36491 * 17 16 15 19 19 N 1.30254 * 108.76031 * 359.63035 * 18 17 16 20 20 H 1.08008 * 119.99739 * 359.97438 * 1 2 3 21 21 H 1.07994 * 120.00454 * 179.97438 * 1 2 3 22 22 H 1.08002 * 119.99554 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47108 * 3.19499 * 3 2 1 24 24 H 1.08993 * 109.47332 * 243.18640 * 3 2 1 25 25 H 1.09000 * 109.47649 * 186.04873 * 5 4 3 26 26 H 1.09003 * 109.46972 * 306.04421 * 5 4 3 27 27 H 0.97001 * 119.99681 * 180.02562 * 9 8 6 28 28 H 1.08997 * 109.47028 * 168.66209 * 14 4 3 29 29 H 1.08994 * 109.47020 * 48.65383 * 14 4 3 30 30 H 1.08003 * 126.44165 * 0.06388 * 16 15 14 31 31 H 1.07999 * 125.62262 * 179.89254 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9649 1.3499 1.1591 5 6 4.0308 0.3465 1.0363 6 6 4.9227 0.7007 -0.1256 7 1 4.7186 1.5832 -0.7137 8 6 5.9995 -0.1019 -0.4378 9 7 6.2485 -1.1763 0.2787 10 14 7.1056 0.3376 -1.8776 11 1 7.7094 1.6746 -1.6479 12 1 8.1830 -0.6769 -2.0018 13 1 6.3039 0.3645 -3.1274 14 6 2.2195 1.1753 2.4128 15 6 1.4045 2.4125 2.6891 16 6 0.1210 2.6095 2.3452 17 8 -0.2222 3.8375 2.7808 18 6 0.8514 4.3752 3.3746 19 7 1.8314 3.5187 3.3236 20 1 -0.5400 0.9354 0.0004 21 1 -0.5400 -0.9352 -0.0004 22 1 1.8499 -0.9354 -0.0004 23 1 1.3566 2.1328 0.0573 24 1 2.6466 1.3880 -0.9171 25 1 4.6193 0.3273 1.9535 26 1 3.5879 -0.6352 0.8682 27 1 7.0062 -1.7407 0.0592 28 1 2.9196 1.0111 3.2319 29 1 1.5557 0.3154 2.3241 30 1 -0.5171 1.9127 1.8219 31 1 0.8959 5.3557 3.8254 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590050708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:30 Heat of formation + Delta-G solvation = 53.257028 kcal Electronic energy + Delta-G solvation = -14991.979549 eV Core-core repulsion = 12469.228265 eV Total energy + Delta-G solvation = -2522.751284 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.06605 -37.58684 -34.54991 -33.00148 -32.10817 -30.37232 -27.25086 -26.38341 -23.89991 -22.49207 -21.43233 -20.63955 -19.00984 -17.12287 -16.40934 -16.23739 -15.13462 -15.08083 -14.93234 -14.18124 -13.88972 -13.55586 -13.04760 -12.69418 -12.01739 -11.39061 -11.32233 -10.97228 -10.85164 -10.80656 -10.64249 -10.48771 -10.23115 -9.86200 -9.35121 -8.96752 -8.66271 -8.42552 -7.26880 -6.02529 -4.03573 1.70187 2.61398 2.97522 3.08341 3.34314 3.38308 3.41751 4.37172 4.44766 5.03549 5.18935 5.28855 5.33734 5.41613 5.60025 5.79833 5.95309 5.98214 6.13622 6.24686 6.35894 6.53865 6.61505 6.98096 7.02225 7.31827 7.32682 7.78837 7.98340 8.08197 8.16667 8.51776 9.02970 9.60268 11.08208 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.035336 B = 0.007303 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.203205 B = 3833.195519 C = 4189.482824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.155 4.155 3 C 0.082 3.918 4 N -0.521 5.521 5 C 0.192 3.808 6 C -0.507 4.507 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.126 3.874 15 C 0.019 3.981 16 C -0.085 4.085 17 O -0.213 6.213 18 C 0.155 3.845 19 N -0.469 5.469 20 H 0.088 0.912 21 H 0.090 0.910 22 H 0.113 0.887 23 H 0.057 0.943 24 H 0.095 0.905 25 H 0.032 0.968 26 H -0.002 1.002 27 H 0.262 0.738 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.209 0.791 31 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.624 5.747 3.248 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.175 4.175 3 C -0.046 4.046 4 N -0.244 5.244 5 C 0.067 3.933 6 C -0.545 4.545 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.003 4.003 15 C -0.101 4.101 16 C -0.156 4.156 17 O -0.099 6.099 18 C -0.071 4.071 19 N -0.198 5.198 20 H 0.106 0.894 21 H 0.108 0.892 22 H 0.131 0.869 23 H 0.075 0.925 24 H 0.113 0.887 25 H 0.050 0.950 26 H 0.016 0.984 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.226 0.774 31 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -11.667 6.187 3.534 13.671 hybrid contribution -0.354 -0.765 -1.069 1.362 sum -12.021 5.422 2.465 13.415 Atomic orbital electron populations 1.23690 0.95932 1.00770 1.05416 1.23965 0.96277 1.01628 0.95658 1.21361 0.94480 0.92163 0.96599 1.62313 1.10777 1.52606 0.98692 1.19789 0.87666 0.87806 0.98014 1.21098 1.10645 1.09536 1.13266 0.91946 1.24964 0.97579 0.95012 0.96927 1.69946 1.29393 1.14775 1.39709 0.86569 0.80155 0.78145 0.82600 1.20159 1.21358 1.20308 1.20366 0.95456 0.89266 0.95224 1.21856 0.92472 0.96456 0.99359 1.24843 0.98434 0.86336 1.05991 1.84434 1.40397 1.27445 1.57642 1.28063 0.79713 1.00853 0.98506 1.70378 1.30153 1.01530 1.17706 0.89350 0.89178 0.86887 0.92492 0.88740 0.95031 0.98428 0.92863 0.89693 0.93413 0.77443 0.73918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.03 13.83 29.01 0.40 -2.63 16 2 C -0.16 -2.66 7.34 -36.03 -0.26 -2.92 16 3 C 0.08 1.57 5.45 -4.98 -0.03 1.54 16 4 N -0.52 -11.30 4.65 -238.97 -1.11 -12.41 16 5 C 0.19 4.92 4.58 -4.98 -0.02 4.89 16 6 C -0.51 -14.13 8.42 -34.44 -0.29 -14.42 16 7 H 0.06 1.73 7.15 -52.49 -0.38 1.36 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.50 13.29 55.43 0.74 -25.77 16 10 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.13 2.35 5.35 -4.97 -0.03 2.33 16 15 C 0.02 0.32 6.05 -82.81 -0.50 -0.18 16 16 C -0.09 -1.21 11.19 29.35 0.33 -0.88 16 17 O -0.21 -2.86 10.77 5.40 0.06 -2.80 16 18 C 0.16 2.00 13.23 52.09 0.69 2.68 16 19 N -0.47 -8.06 11.29 -11.18 -0.13 -8.18 16 20 H 0.09 1.07 6.79 -52.48 -0.36 0.72 16 21 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 22 H 0.11 2.15 6.92 -52.49 -0.36 1.78 16 23 H 0.06 1.00 6.51 -51.93 -0.34 0.66 16 24 H 0.09 1.99 6.70 -51.93 -0.35 1.64 16 25 H 0.03 0.88 7.87 -51.93 -0.41 0.47 16 26 H 0.00 -0.05 6.48 -51.93 -0.34 -0.39 16 27 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 28 H 0.08 1.67 7.82 -51.93 -0.41 1.26 16 29 H 0.05 0.83 6.62 -51.93 -0.34 0.48 16 30 H 0.21 2.42 6.45 -52.48 -0.34 2.08 16 31 H 0.25 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 265.50 15.07 4.00 4.00 Total: -1.00 -31.48 265.50 -4.87 -36.34 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -3.59 Total: 0.25 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 0.19 Total: -8.09 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.50 Total: -46.36 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.06 Total: -2.80 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.48 -4.87 -36.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590050708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.600 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds