Wall clock time and date at job start Mon Mar 30 2020 20:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47404 * 2 1 4 4 C 1.38626 * 120.00143 * 180.02562 * 3 2 1 5 5 C 1.39166 * 120.48283 * 359.97438 * 4 3 2 6 6 C 1.39132 * 118.26417 * 179.74958 * 5 4 3 7 7 N 1.38640 * 120.48202 * 180.27867 * 6 5 4 8 8 C 1.46494 * 120.00173 * 0.02562 * 7 6 5 9 9 C 1.50700 * 109.47356 * 180.02562 * 8 7 6 10 10 H 1.07995 * 119.99874 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99876 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00516 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99830 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46872 * 60.00034 * 13 11 9 15 15 H 1.48495 * 109.47525 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47136 * 300.00187 * 13 11 9 17 17 N 1.33190 * 119.03250 * 0.25252 * 6 5 4 18 18 C 1.31725 * 120.88100 * 0.02562 * 17 6 5 19 19 N 1.31758 * 121.91359 * 359.97438 * 18 17 6 20 20 H 1.08997 * 109.47210 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47337 * 300.00168 * 1 2 3 22 22 H 1.09001 * 109.47082 * 59.99831 * 1 2 3 23 23 H 1.08997 * 109.46896 * 239.99989 * 2 1 3 24 24 H 1.09001 * 109.47082 * 120.00169 * 2 1 3 25 25 H 0.97002 * 119.99382 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.87065 * 0.03168 * 5 4 3 27 27 H 0.96999 * 119.99759 * 179.97438 * 7 6 5 28 28 H 1.09007 * 109.47118 * 300.00074 * 8 7 6 29 29 H 1.09001 * 109.47123 * 59.99811 * 8 7 6 30 30 H 0.96999 * 120.00336 * 180.02562 * 12 11 9 31 31 H 1.08001 * 119.04323 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3813 1.6345 -0.0005 5 6 4.2945 0.5843 -0.0005 6 6 5.6515 0.8913 -0.0064 7 7 6.6011 -0.1189 -0.0125 8 6 6.1784 -1.5215 -0.0133 9 6 7.3938 -2.4125 -0.0197 10 1 8.3822 -1.9774 -0.0224 11 6 7.2438 -3.7830 -0.0210 12 7 6.0401 -4.3129 -0.0161 13 14 8.7503 -4.8875 -0.0296 14 1 9.5691 -4.6172 1.1795 15 1 8.3219 -6.3093 -0.0291 16 1 9.5578 -4.6137 -1.2455 17 7 6.0251 2.1697 -0.0067 18 6 5.1296 3.1357 -0.0010 19 7 3.8358 2.8862 0.0047 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.3880 2.1184 0.0004 26 1 3.9586 -0.4421 -0.0006 27 1 7.5453 0.1031 -0.0170 28 1 5.5854 -1.7228 0.8789 29 1 5.5776 -1.7195 -0.9010 30 1 5.9346 -5.2771 -0.0167 31 1 5.4655 4.1622 -0.0018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258859164.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:16 Heat of formation + Delta-G solvation = 41.299876 kcal Electronic energy + Delta-G solvation = -14514.042065 eV Core-core repulsion = 12023.065031 eV Total energy + Delta-G solvation = -2490.977034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.17167 -36.64404 -35.51888 -32.96041 -32.03102 -30.30771 -28.72802 -26.94192 -24.25716 -22.94258 -21.80696 -21.48443 -17.81809 -17.47036 -16.18192 -15.14150 -15.04242 -14.92704 -14.55563 -14.21405 -14.17583 -13.61835 -13.11900 -12.77991 -12.29573 -12.07406 -11.87260 -11.79610 -11.03884 -11.00631 -10.62223 -10.34077 -9.94083 -9.77496 -9.47529 -8.66352 -8.60019 -7.79748 -7.16380 -6.27032 -4.32635 1.88723 2.26215 3.22294 3.26613 3.28798 3.34547 4.02967 4.33194 4.65335 4.89324 5.02136 5.08662 5.10661 5.27939 5.45887 5.69039 5.82590 5.91381 5.98259 6.16148 6.23610 6.65949 7.00306 7.24653 7.29930 7.48007 7.62184 7.83746 7.88225 8.30855 8.54218 8.76558 9.06466 9.34336 10.83456 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.006871 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.145855 B = 4074.308791 C = 5047.702415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 N -0.721 5.721 4 C 0.452 3.548 5 C -0.361 4.361 6 C 0.459 3.541 7 N -0.690 5.690 8 C 0.254 3.746 9 C -0.542 4.542 10 H 0.065 0.935 11 C 0.065 3.935 12 N -0.889 5.889 13 Si 0.906 3.094 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.623 5.623 18 C 0.364 3.636 19 N -0.631 5.631 20 H 0.074 0.926 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.401 0.599 26 H 0.137 0.863 27 H 0.399 0.601 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.267 0.733 31 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 7.815 0.014 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.003 4.003 3 N -0.355 5.355 4 C 0.213 3.787 5 C -0.395 4.395 6 C 0.216 3.784 7 N -0.316 5.316 8 C 0.133 3.867 9 C -0.580 4.580 10 H 0.083 0.917 11 C -0.138 4.138 12 N -0.526 5.526 13 Si 0.733 3.267 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.200 1.200 17 N -0.353 5.353 18 C 0.072 3.928 19 N -0.362 5.362 20 H 0.093 0.907 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.236 0.764 26 H 0.155 0.845 27 H 0.234 0.766 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.973 7.972 0.017 11.274 hybrid contribution 0.565 -1.212 -0.005 1.337 sum -7.408 6.760 0.011 10.029 Atomic orbital electron populations 1.21962 0.94527 1.03128 1.02308 1.21352 0.94226 0.82465 1.02302 1.44344 1.02667 1.07756 1.80742 1.18123 0.85126 0.88950 0.86509 1.21287 0.92391 1.00429 1.25362 1.18441 0.87881 0.87011 0.85111 1.45369 1.06964 1.05263 1.73973 1.19225 0.96705 0.73769 0.97048 1.21141 0.92482 0.91167 1.53203 0.91730 1.24912 0.96564 0.97884 0.94463 1.69925 1.21461 1.12227 1.49025 0.86426 0.82267 0.79130 0.78866 1.19977 1.21016 1.19971 1.67948 1.39775 0.99347 1.28219 1.24094 0.83135 0.97974 0.87606 1.67828 1.18247 1.20658 1.29481 0.90663 0.92116 0.92109 0.91588 0.91592 0.76423 0.84514 0.76621 0.95681 0.95683 0.92324 0.79817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.03 37.16 0.37 -1.07 16 2 C 0.12 1.50 5.64 -4.04 -0.02 1.48 16 3 N -0.72 -10.19 5.71 -60.33 -0.34 -10.53 16 4 C 0.45 8.07 7.70 -154.72 -1.19 6.87 16 5 C -0.36 -7.21 8.62 -38.91 -0.34 -7.54 16 6 C 0.46 9.71 7.70 -154.70 -1.19 8.52 16 7 N -0.69 -15.31 5.71 -61.51 -0.35 -15.66 16 8 C 0.25 6.36 4.68 -5.20 -0.02 6.34 16 9 C -0.54 -14.47 9.28 -34.44 -0.32 -14.79 16 10 H 0.06 1.66 7.60 -52.49 -0.40 1.26 16 11 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 13 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 N -0.62 -12.23 10.47 -13.88 -0.15 -12.37 16 18 C 0.36 6.22 12.28 -92.24 -1.13 5.09 16 19 N -0.63 -11.13 10.47 -13.88 -0.15 -11.28 16 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16 24 H 0.07 0.88 7.97 -51.93 -0.41 0.46 16 25 H 0.40 4.90 8.60 -40.82 -0.35 4.55 16 26 H 0.14 2.79 5.65 -52.49 -0.30 2.49 16 27 H 0.40 8.48 8.45 -40.82 -0.34 8.13 16 28 H 0.03 0.67 7.97 -51.92 -0.41 0.26 16 29 H 0.03 0.67 7.97 -51.93 -0.41 0.26 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.19 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 270.85 15.07 4.08 4.08 Total: -1.00 -29.41 270.85 -9.00 -38.41 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -3.87 Total: 9.38 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -3.94 Total: 6.56 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -0.25 Total: -73.99 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.41 -9.00 -38.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258859164.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.710 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds