Wall clock time and date at job start Mon Mar 30 2020 20:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00279 * 2 1 4 4 H 1.48495 * 109.47039 * 270.00071 * 3 2 1 5 5 H 1.48499 * 109.46683 * 30.00459 * 3 2 1 6 6 H 1.48502 * 109.46853 * 149.99804 * 3 2 1 7 7 C 1.37878 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99972 * 185.19127 * 7 2 1 9 9 C 1.50700 * 120.00373 * 5.19537 * 7 2 1 10 10 N 1.46506 * 109.51747 * 303.58418 * 9 7 2 11 11 C 1.35308 * 125.86738 * 285.42503 * 10 9 7 12 12 C 1.35349 * 106.17583 * 180.02562 * 11 10 9 13 13 N 1.33769 * 106.49552 * 359.97438 * 12 11 10 14 14 N 1.28634 * 108.88550 * 359.74224 * 13 12 11 15 15 C 1.53118 * 109.57514 * 63.74703 * 9 7 2 16 16 C 1.53036 * 109.28179 * 177.60300 * 15 9 7 17 17 N 1.46844 * 109.51599 * 300.81171 * 16 15 9 18 18 C 1.46844 * 111.19892 * 61.73994 * 17 16 15 19 19 C 1.53035 * 109.52645 * 298.26056 * 18 17 16 20 20 H 0.96997 * 119.99472 * 0.02562 * 1 2 3 21 21 H 1.08001 * 126.91122 * 359.97438 * 11 10 9 22 22 H 1.08007 * 126.75354 * 180.02562 * 12 11 10 23 23 H 1.09005 * 109.51230 * 57.65637 * 15 9 7 24 24 H 1.09003 * 109.49858 * 297.54478 * 15 9 7 25 25 H 1.08998 * 109.46545 * 180.79415 * 16 15 9 26 26 H 1.09004 * 109.45560 * 60.81842 * 16 15 9 27 27 H 1.00900 * 110.99866 * 185.84272 * 17 16 15 28 28 H 1.09001 * 109.45871 * 58.28280 * 18 17 16 29 29 H 1.09002 * 109.45948 * 178.25395 * 18 17 16 30 30 H 1.09004 * 109.50256 * 179.11783 * 19 18 17 31 31 H 1.08997 * 109.50143 * 299.19586 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0811 -1.1961 0.0841 9 6 1.2557 -2.4965 -0.1193 10 7 0.2621 -2.5894 0.9533 11 6 0.5232 -2.8467 2.2558 12 6 -0.6733 -2.8420 2.8884 13 7 -1.5957 -2.5848 1.9543 14 7 -1.0087 -2.4345 0.8197 15 6 0.5507 -2.5610 -1.4770 16 6 -0.1579 -3.9104 -1.6149 17 7 0.8258 -4.9948 -1.5022 18 6 1.4821 -4.9819 -0.1886 19 6 2.2395 -3.6644 -0.0081 20 1 -0.4849 0.8401 -0.0004 21 1 1.4916 -3.0216 2.7009 22 1 -0.8488 -3.0115 3.9405 23 1 1.2859 -2.4528 -2.2745 24 1 -0.1818 -1.7566 -1.5452 25 1 -0.6491 -3.9651 -2.5864 26 1 -0.9024 -4.0118 -0.8253 27 1 0.3988 -5.8906 -1.6844 28 1 0.7298 -5.0787 0.5941 29 1 2.1822 -5.8149 -0.1244 30 1 2.7135 -3.6487 0.9733 31 1 3.0017 -3.5739 -0.7820 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260368607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:34 Heat of formation + Delta-G solvation = 100.783528 kcal Electronic energy + Delta-G solvation = -16264.670118 eV Core-core repulsion = 13776.272489 eV Total energy + Delta-G solvation = -2488.397629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.86155 -37.92299 -34.02411 -31.93134 -30.52853 -29.66655 -29.22735 -25.77848 -22.77281 -22.49043 -20.91331 -20.80132 -18.69218 -17.15680 -16.27324 -15.15205 -14.94421 -14.31516 -13.97506 -13.81450 -13.25451 -12.98484 -12.62424 -12.41017 -11.70174 -11.34349 -11.13989 -10.99117 -10.64118 -10.49804 -10.29914 -10.23766 -9.76280 -9.68711 -9.27532 -8.80975 -8.48245 -8.02682 -7.87764 -6.29853 -4.53832 3.11388 3.17773 3.22984 3.24428 3.90166 3.99079 4.16354 4.73859 5.04298 5.46573 5.60366 5.73279 5.81554 6.00795 6.05997 6.11887 6.24430 6.28418 6.46382 6.49923 6.68765 6.73549 6.96589 7.18305 7.29943 7.47517 7.52105 7.73647 7.79580 7.86511 8.24384 8.54527 9.18633 10.03115 10.67050 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.014481 C = 0.011658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.820297 B = 1933.060995 C = 2401.213602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.076 3.924 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.283 3.717 10 N -0.216 5.216 11 C -0.069 4.069 12 C -0.087 4.087 13 N -0.328 5.328 14 N -0.043 5.043 15 C -0.098 4.098 16 C 0.047 3.953 17 N -0.689 5.689 18 C 0.056 3.944 19 C -0.112 4.112 20 H 0.270 0.730 21 H 0.162 0.838 22 H 0.162 0.838 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.330 0.670 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 -6.338 0.139 7.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.092 0.908 9 C 0.204 3.796 10 N -0.011 5.011 11 C -0.222 4.222 12 C -0.246 4.246 13 N -0.192 5.192 14 N -0.024 5.024 15 C -0.137 4.137 16 C -0.082 4.082 17 N -0.320 5.320 18 C -0.074 4.074 19 C -0.151 4.151 20 H 0.080 0.920 21 H 0.179 0.821 22 H 0.180 0.820 23 H 0.084 0.916 24 H 0.117 0.883 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.146 0.854 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.503 -5.565 -1.189 6.217 hybrid contribution 0.807 0.523 1.554 1.828 sum 3.309 -5.042 0.365 6.042 Atomic orbital electron populations 1.70045 1.05660 1.27811 1.43516 1.25177 0.95022 0.99871 0.93305 0.86451 0.79820 0.82520 0.78517 1.20039 1.21039 1.19598 1.21147 0.93665 0.88747 1.54913 0.90792 1.18909 0.83416 0.94401 0.82832 1.48671 1.06771 1.37854 1.07829 1.23125 1.00663 1.11560 0.86831 1.23155 0.90137 1.11038 1.00291 1.74953 1.28283 1.19325 0.96617 1.78049 0.90773 1.15476 1.18082 1.21666 1.00490 0.95499 0.96011 1.22178 0.93289 0.92468 1.00217 1.60401 1.34358 1.06621 1.30598 1.21944 0.97298 0.98433 0.89725 1.21922 0.98388 0.92918 1.01914 0.91981 0.82052 0.82034 0.91555 0.88348 0.91952 0.94345 0.85404 0.95880 0.91661 0.91928 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.76 10.04 55.43 0.56 -22.20 16 2 C 0.08 1.95 5.22 -17.82 -0.09 1.86 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.55 -13.51 8.11 -34.44 -0.28 -13.79 16 8 H 0.07 1.78 7.75 -52.49 -0.41 1.38 16 9 C 0.28 6.39 0.43 -132.85 -0.06 6.33 16 10 N -0.22 -5.09 1.66 -49.51 -0.08 -5.17 16 11 C -0.07 -1.48 10.29 -17.05 -0.18 -1.66 16 12 C -0.09 -1.88 12.05 -17.74 -0.21 -2.10 16 13 N -0.33 -8.15 12.41 30.24 0.38 -7.78 16 14 N -0.04 -1.11 9.28 60.35 0.56 -0.55 16 15 C -0.10 -2.18 4.34 -26.65 -0.12 -2.30 16 16 C 0.05 0.93 6.35 -3.84 -0.02 0.90 16 17 N -0.69 -11.80 6.84 -113.82 -0.78 -12.58 16 18 C 0.06 0.95 6.40 -3.84 -0.02 0.93 16 19 C -0.11 -2.13 4.56 -26.66 -0.12 -2.25 16 20 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 21 H 0.16 2.97 7.57 -52.49 -0.40 2.57 16 22 H 0.16 2.82 8.06 -52.48 -0.42 2.40 16 23 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 24 H 0.10 2.49 6.47 -51.93 -0.34 2.16 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.83 6.36 -51.93 -0.33 0.50 16 27 H 0.33 4.82 8.90 -39.29 -0.35 4.47 16 28 H 0.02 0.43 7.34 -51.93 -0.38 0.05 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.12 7.31 -51.93 -0.38 0.74 16 31 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 249.50 15.07 3.76 3.76 Total: -1.00 -28.76 249.50 -5.57 -34.33 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -3.83 Total: 7.23 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.10 Total: -12.07 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.63 Total: -48.28 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.76 -5.57 -34.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260368607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.114 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds