Wall clock time and date at job start Mon Mar 30 2020 20:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.01915 * 300.70285 * 9 7 2 11 11 C 1.54271 * 110.03258 * 62.09501 * 9 7 2 12 12 C 1.54889 * 104.19433 * 142.89340 * 11 9 7 13 13 C 1.54886 * 102.75075 * 322.05562 * 12 11 9 14 14 C 1.53871 * 110.03200 * 179.31062 * 9 7 2 15 15 H 1.09001 * 110.03154 * 359.97438 * 14 9 7 16 16 N 1.46498 * 110.03615 * 121.43232 * 14 9 7 17 17 N 1.28697 * 125.67390 * 59.68816 * 16 14 9 18 18 C 1.30929 * 109.71241 * 179.89073 * 17 16 14 19 19 C 1.39905 * 108.24359 * 0.37854 * 18 17 16 20 20 N 1.40065 * 126.70694 * 179.79427 * 19 18 17 21 21 N 1.31838 * 106.58120 * 359.77348 * 19 18 17 22 22 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 23 23 H 1.09005 * 110.48222 * 261.56468 * 11 9 7 24 24 H 1.08999 * 110.48830 * 24.08197 * 11 9 7 25 25 H 1.09001 * 110.75912 * 80.37628 * 12 11 9 26 26 H 1.09001 * 110.75545 * 203.55531 * 12 11 9 27 27 H 1.08994 * 110.48721 * 156.62216 * 13 12 11 28 28 H 1.09007 * 110.48609 * 279.26624 * 13 12 11 29 29 H 1.08000 * 125.87271 * 180.15467 * 18 17 16 30 30 H 0.97004 * 120.00104 * 179.97438 * 20 19 18 31 31 H 0.97000 * 120.00355 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6120 -2.5602 0.8826 11 6 0.3990 -2.6184 -1.2787 12 6 0.4861 -4.1185 -1.6545 13 6 1.9534 -4.4732 -1.3074 14 6 2.2394 -3.6784 -0.0153 15 1 3.2641 -3.3067 -0.0248 16 7 2.0244 -4.5303 1.1569 17 7 0.9300 -5.1404 1.4507 18 6 1.0849 -5.8146 2.5624 19 6 2.3907 -5.6092 3.0208 20 7 2.9652 -6.1462 4.1798 21 7 2.9746 -4.8117 2.1484 22 1 -0.4850 -0.8401 -0.0004 23 1 -0.6341 -2.3351 -1.0771 24 1 0.8154 -1.9992 -2.0732 25 1 -0.2063 -4.7082 -1.0538 26 1 0.2921 -4.2623 -2.7174 27 1 2.0547 -5.5433 -1.1269 28 1 2.6222 -4.1553 -2.1073 29 1 0.3329 -6.4216 3.0444 30 1 3.8853 -5.9384 4.4061 31 1 2.4431 -6.7258 4.7563 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260964638.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:06 Heat of formation + Delta-G solvation = 93.990311 kcal Electronic energy + Delta-G solvation = -15306.424961 eV Core-core repulsion = 12817.732756 eV Total energy + Delta-G solvation = -2488.692205 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.65229 -37.59517 -34.58825 -32.75490 -31.01696 -30.22037 -27.90182 -26.90410 -23.95366 -22.11385 -21.14483 -19.85874 -19.22525 -17.03575 -16.74389 -15.93170 -15.66890 -15.14113 -14.50922 -13.96455 -13.77236 -13.31609 -12.68007 -12.03668 -11.40527 -11.14003 -11.02910 -10.92244 -10.65840 -10.38944 -10.26526 -10.14744 -10.05169 -9.99583 -9.67505 -9.00020 -8.56760 -8.36347 -7.65189 -6.36393 -4.10249 2.31721 2.73345 3.18055 3.42305 3.46503 3.61902 3.95016 4.51053 4.86871 5.27293 5.37676 5.42814 5.49177 5.61513 6.06874 6.14428 6.28652 6.39808 6.41571 6.47167 6.48201 6.53547 6.86063 6.96312 7.25974 7.39114 7.51125 7.65244 7.86911 8.13284 8.38208 8.81545 8.83742 9.61416 11.01554 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.029667 B = 0.009033 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.587151 B = 3099.017523 C = 3625.837643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 1.070 2.930 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.599 4.599 8 H 0.052 0.948 9 C 0.032 3.968 10 H 0.031 0.969 11 C -0.110 4.110 12 C -0.126 4.126 13 C -0.125 4.125 14 C 0.181 3.819 15 H 0.108 0.892 16 N -0.190 5.190 17 N -0.210 5.210 18 C -0.111 4.111 19 C 0.288 3.712 20 N -0.842 5.842 21 N -0.345 5.345 22 H 0.274 0.726 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.180 0.820 30 H 0.402 0.598 31 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.301 -10.937 2.883 11.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.182 4.182 3 Si 0.898 3.102 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.638 4.638 8 H 0.071 0.929 9 C 0.013 3.987 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.164 4.164 13 C -0.163 4.163 14 C 0.081 3.919 15 H 0.126 0.874 16 N -0.092 5.092 17 N -0.052 5.052 18 C -0.298 4.298 19 C 0.026 3.974 20 N -0.395 5.395 21 N -0.187 5.187 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.197 0.803 30 H 0.231 0.769 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.318 -8.417 1.695 9.204 hybrid contribution 0.209 -2.386 1.218 2.687 sum 3.527 -10.803 2.913 11.731 Atomic orbital electron populations 1.70758 1.06842 1.31256 1.45683 1.25775 0.96522 1.02464 0.93465 0.83526 0.74732 0.75118 0.76785 1.21347 1.21481 1.21010 1.22017 0.94008 0.91003 1.56749 0.92929 1.19776 0.92625 0.91607 0.94741 0.95058 1.22586 0.99931 0.92924 0.99370 1.22570 0.95351 0.98706 0.99732 1.22690 0.98638 0.98782 0.96238 1.22613 1.03225 0.88335 0.77680 0.87414 1.51329 1.02735 1.35975 1.19171 1.73146 1.12478 1.05172 1.14445 1.23874 0.97155 1.10898 0.97904 1.20087 0.92275 0.94819 0.90263 1.41080 1.16620 1.57870 1.23966 1.78067 1.16422 1.21978 1.02185 0.91424 0.92711 0.91761 0.91633 0.92611 0.92274 0.90139 0.80309 0.76925 0.76236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.18 13.42 55.43 0.74 -26.44 16 2 C 0.02 0.65 5.32 -17.82 -0.09 0.55 16 3 Si 1.07 25.20 29.90 -169.99 -5.08 20.11 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.60 -16.65 8.37 -34.44 -0.29 -16.94 16 8 H 0.05 1.45 7.33 -52.49 -0.38 1.07 16 9 C 0.03 0.81 2.21 -90.66 -0.20 0.61 16 10 H 0.03 0.89 7.62 -51.93 -0.40 0.49 16 11 C -0.11 -2.50 5.27 -25.07 -0.13 -2.63 16 12 C -0.13 -2.37 6.91 -24.74 -0.17 -2.54 16 13 C -0.12 -2.30 6.40 -25.01 -0.16 -2.46 16 14 C 0.18 3.96 3.65 -66.76 -0.24 3.72 16 15 H 0.11 2.41 7.37 -51.93 -0.38 2.03 16 16 N -0.19 -4.09 3.92 -3.89 -0.02 -4.11 16 17 N -0.21 -4.29 11.57 30.65 0.35 -3.93 16 18 C -0.11 -1.89 12.03 -17.31 -0.21 -2.10 16 19 C 0.29 4.91 8.57 -154.16 -1.32 3.59 16 20 N -0.84 -9.73 9.16 31.40 0.29 -9.44 16 21 N -0.35 -7.14 12.70 31.42 0.40 -6.74 16 22 H 0.27 8.12 5.45 -40.82 -0.22 7.90 16 23 H 0.05 1.30 6.86 -51.93 -0.36 0.94 16 24 H 0.06 1.53 7.85 -51.93 -0.41 1.12 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 28 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.18 2.29 8.06 -52.49 -0.42 1.87 16 30 H 0.40 4.15 8.96 -40.82 -0.37 3.79 16 31 H 0.41 3.30 8.96 -40.82 -0.37 2.93 16 LS Contribution 261.62 15.07 3.94 3.94 Total: -1.00 -32.34 261.62 -5.97 -38.31 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.78 Total: 6.49 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -2.82 Total: -18.20 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 1.77 Total: -50.66 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.34 -5.97 -38.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260964638.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.302 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds