Wall clock time and date at job start Mon Mar 30 2020 20:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48495 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46745 * 299.99565 * 3 2 1 6 6 H 1.48498 * 109.47103 * 59.99243 * 3 2 1 7 7 C 1.37881 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99619 * 175.14881 * 7 2 1 9 9 C 1.50708 * 119.99823 * 355.42157 * 7 2 1 10 10 C 1.52999 * 115.54730 * 274.92856 * 9 7 2 11 11 N 1.46894 * 109.47155 * 294.80053 * 10 9 7 12 12 C 1.46906 * 110.99880 * 185.38213 * 11 10 9 13 13 C 1.53001 * 109.46923 * 180.02562 * 12 11 10 14 14 F 1.39900 * 109.47018 * 60.00062 * 13 12 11 15 15 F 1.39905 * 109.46953 * 179.97438 * 13 12 11 16 16 F 1.39896 * 109.47447 * 300.00075 * 13 12 11 17 17 C 1.52996 * 117.49449 * 129.26134 * 9 7 2 18 18 C 1.52994 * 117.49673 * 60.60210 * 9 7 2 19 19 H 0.96995 * 119.99832 * 5.00976 * 1 2 3 20 20 H 1.08995 * 109.47142 * 54.80385 * 10 9 7 21 21 H 1.09006 * 109.46629 * 174.80683 * 10 9 7 22 22 H 1.00901 * 111.00244 * 61.43158 * 11 10 9 23 23 H 1.08996 * 109.46892 * 299.99852 * 12 11 10 24 24 H 1.09001 * 109.47015 * 60.00411 * 12 11 10 25 25 H 1.08999 * 117.50032 * 359.97438 * 17 9 7 26 26 H 1.09002 * 117.49839 * 145.02178 * 17 9 7 27 27 H 1.09004 * 117.49798 * 214.97571 * 18 9 7 28 28 H 1.09005 * 117.50278 * 359.97231 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0816 -1.1957 -0.0786 9 6 1.2546 -2.4971 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1612 -3.2474 2.2529 12 6 1.8749 -3.8095 3.5796 13 6 3.1903 -4.1022 4.3041 14 9 3.9179 -2.9159 4.4473 15 9 2.9177 -4.6369 5.5679 16 9 3.9382 -5.0209 3.5600 17 6 1.5731 -3.5804 -0.9271 18 6 0.2454 -2.8219 -0.9977 19 1 -0.4850 0.8368 -0.0734 20 1 0.3752 -2.1614 2.0430 21 1 0.3012 -3.8499 1.4843 22 1 2.7411 -2.4250 2.3261 23 1 1.2927 -3.0934 4.1595 24 1 1.3077 -4.7336 3.4680 25 1 2.3247 -3.3505 -1.6823 26 1 1.5429 -4.6177 -0.5938 27 1 -0.6578 -3.3606 -0.7108 28 1 0.1234 -2.0930 -1.7990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:40 Heat of formation + Delta-G solvation = -138.765485 kcal Electronic energy + Delta-G solvation = -15595.310611 eV Core-core repulsion = 12424.657204 eV Total energy + Delta-G solvation = -3170.653407 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.83145 -47.40147 -47.25971 -37.12370 -34.65442 -31.94216 -28.83877 -25.62696 -24.15237 -22.29041 -20.94439 -19.24289 -18.29665 -18.16781 -17.23207 -15.88446 -15.03915 -14.63799 -14.38204 -14.09728 -13.89627 -13.76599 -13.69802 -13.48208 -13.45747 -12.89766 -12.35790 -11.73112 -11.52399 -11.20656 -10.99304 -10.91667 -10.45868 -10.12856 -9.42296 -8.90104 -8.46527 -8.19435 -7.83186 -6.06472 -4.14509 2.98511 3.24829 3.34226 3.38768 3.98829 4.22821 4.30418 4.37033 4.94866 5.21117 5.38683 5.47962 5.55044 6.03654 6.37880 6.44804 6.65603 6.72608 6.87873 7.15472 7.33387 7.50608 7.69795 7.82913 7.91391 8.44142 8.90169 9.52358 11.00526 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.029437 B = 0.008519 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.954401 B = 3286.063690 C = 3822.128582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.069 3.931 3 Si 0.887 3.113 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.495 4.495 8 H 0.062 0.938 9 C 0.042 3.958 10 C 0.108 3.892 11 N -0.674 5.674 12 C 0.014 3.986 13 C 0.454 3.546 14 F -0.185 7.185 15 F -0.192 7.192 16 F -0.175 7.175 17 C -0.200 4.200 18 C -0.152 4.152 19 H 0.259 0.741 20 H 0.038 0.962 21 H 0.046 0.954 22 H 0.357 0.643 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -6.366 7.090 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.532 4.532 8 H 0.080 0.920 9 C 0.041 3.959 10 C -0.020 4.020 11 N -0.307 5.307 12 C -0.118 4.118 13 C 0.399 3.601 14 F -0.167 7.167 15 F -0.173 7.173 16 F -0.157 7.157 17 C -0.237 4.237 18 C -0.191 4.191 19 H 0.069 0.931 20 H 0.056 0.944 21 H 0.064 0.936 22 H 0.178 0.822 23 H 0.086 0.914 24 H 0.126 0.874 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.307 -6.847 6.876 9.974 hybrid contribution 0.239 1.691 0.564 1.799 sum 2.545 -5.156 7.440 9.403 Atomic orbital electron populations 1.70012 1.05857 1.26571 1.49262 1.25021 0.94818 0.98933 0.94604 0.86608 0.80424 0.83870 0.77602 1.19554 1.21046 1.21034 1.20529 0.92945 0.88672 1.51096 0.92004 1.18721 0.98400 0.93082 0.85665 1.21525 0.87859 0.97072 0.95587 1.60451 1.20347 1.37979 1.11959 1.23079 0.91084 1.04071 0.93549 1.20682 0.88173 0.74247 0.76967 1.93172 1.80339 1.47416 1.95757 1.93152 1.93921 1.86837 1.43415 1.93189 1.78958 1.67146 1.76381 1.22892 0.99772 0.95835 1.05207 1.22506 0.90857 1.01688 1.04009 0.93099 0.94359 0.93599 0.82236 0.91421 0.87377 0.90768 0.91630 0.92245 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.15 12.65 55.43 0.70 -23.45 15 2 C 0.07 1.83 5.43 -17.82 -0.10 1.74 15 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.49 -12.96 8.33 -34.43 -0.29 -13.24 15 8 H 0.06 1.65 7.82 -52.49 -0.41 1.23 15 9 C 0.04 1.00 1.65 -155.66 -0.26 0.74 15 10 C 0.11 2.25 5.54 -3.83 -0.02 2.23 15 11 N -0.67 -12.52 6.39 -113.78 -0.73 -13.25 15 12 C 0.01 0.20 5.68 -3.82 -0.02 0.18 15 13 C 0.45 6.64 3.29 37.16 0.12 6.76 15 14 F -0.19 -2.92 16.79 2.25 0.04 -2.88 15 15 F -0.19 -2.62 17.32 2.25 0.04 -2.58 15 16 F -0.18 -2.78 17.24 2.25 0.04 -2.74 15 17 C -0.20 -4.37 9.96 -26.70 -0.27 -4.64 15 18 C -0.15 -3.53 9.14 -26.70 -0.24 -3.78 15 19 H 0.26 6.83 8.32 -40.82 -0.34 6.49 15 20 H 0.04 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 15 22 H 0.36 7.05 7.83 -39.29 -0.31 6.74 15 23 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 24 H 0.11 1.41 8.14 -51.93 -0.42 0.98 15 25 H 0.07 1.63 8.14 -51.93 -0.42 1.21 15 26 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 15 28 H 0.08 2.09 8.14 -51.93 -0.42 1.66 15 LS Contribution 259.30 15.07 3.91 3.91 Total: -1.00 -26.86 259.30 -5.33 -32.19 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.23 Total: 3.25 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.07 Total: -10.02 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.03 Total: -36.69 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.12 Total: -8.20 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.86 -5.33 -32.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.578 kcal (2) G-P(sol) polarization free energy of solvation -26.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds