Wall clock time and date at job start Mon Mar 30 2020 20:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48495 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46745 * 299.99565 * 3 2 1 6 6 H 1.48498 * 109.47103 * 59.99243 * 3 2 1 7 7 C 1.37881 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99619 * 175.14881 * 7 2 1 9 9 C 1.50708 * 119.99823 * 355.42157 * 7 2 1 10 10 C 1.52999 * 115.54730 * 274.92856 * 9 7 2 11 11 N 1.46894 * 109.47155 * 294.80053 * 10 9 7 12 12 C 1.46906 * 110.99880 * 185.38213 * 11 10 9 13 13 C 1.53001 * 109.46923 * 180.02562 * 12 11 10 14 14 F 1.39900 * 109.47018 * 60.00062 * 13 12 11 15 15 F 1.39905 * 109.46953 * 179.97438 * 13 12 11 16 16 F 1.39896 * 109.47447 * 300.00075 * 13 12 11 17 17 C 1.52996 * 117.49449 * 129.26134 * 9 7 2 18 18 C 1.52994 * 117.49673 * 60.60210 * 9 7 2 19 19 H 0.96995 * 119.99832 * 5.00976 * 1 2 3 20 20 H 1.08995 * 109.47142 * 54.80385 * 10 9 7 21 21 H 1.09006 * 109.46629 * 174.80683 * 10 9 7 22 22 H 1.00901 * 111.00244 * 61.43158 * 11 10 9 23 23 H 1.08996 * 109.46892 * 299.99852 * 12 11 10 24 24 H 1.09001 * 109.47015 * 60.00411 * 12 11 10 25 25 H 1.08999 * 117.50032 * 359.97438 * 17 9 7 26 26 H 1.09002 * 117.49839 * 145.02178 * 17 9 7 27 27 H 1.09004 * 117.49798 * 214.97571 * 18 9 7 28 28 H 1.09005 * 117.50278 * 359.97231 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0816 -1.1957 -0.0786 9 6 1.2546 -2.4971 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1612 -3.2474 2.2529 12 6 1.8749 -3.8095 3.5796 13 6 3.1903 -4.1022 4.3041 14 9 3.9179 -2.9159 4.4473 15 9 2.9177 -4.6369 5.5679 16 9 3.9382 -5.0209 3.5600 17 6 1.5731 -3.5804 -0.9271 18 6 0.2454 -2.8219 -0.9977 19 1 -0.4850 0.8368 -0.0734 20 1 0.3752 -2.1614 2.0430 21 1 0.3012 -3.8499 1.4843 22 1 2.7411 -2.4250 2.3261 23 1 1.2927 -3.0934 4.1595 24 1 1.3077 -4.7336 3.4680 25 1 2.3247 -3.3505 -1.6823 26 1 1.5429 -4.6177 -0.5938 27 1 -0.6578 -3.3606 -0.7108 28 1 0.1234 -2.0930 -1.7990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:39 Heat of formation + Delta-G solvation = -154.797654 kcal Electronic energy + Delta-G solvation = -15596.005818 eV Core-core repulsion = 12424.657204 eV Total energy + Delta-G solvation = -3171.348614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.01233 -48.56574 -48.46807 -38.83056 -36.16133 -33.94361 -30.21526 -27.58195 -25.69372 -23.55341 -22.73566 -21.05595 -19.48964 -19.36210 -18.56819 -17.75413 -16.64257 -16.33857 -15.69900 -15.59124 -15.32998 -15.10262 -14.94811 -14.68565 -14.65334 -14.54039 -13.87410 -13.31647 -13.22538 -12.89015 -12.83770 -12.55560 -12.28858 -11.94482 -11.24158 -10.82198 -10.38098 -9.96400 -9.38387 -8.07942 -6.20227 1.39871 1.44775 1.54383 1.79900 2.43685 2.73837 3.01065 3.14048 3.19562 3.54494 3.82228 4.21466 4.33522 4.42169 4.64570 4.72906 4.94422 4.95781 5.11702 5.34132 5.62043 5.72610 5.81130 6.04888 6.33816 6.47719 6.88674 7.48689 8.98455 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.029437 B = 0.008519 C = 0.007324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.954401 B = 3286.063690 C = 3822.128582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.028 3.972 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.504 4.504 8 H 0.051 0.949 9 C 0.017 3.983 10 C 0.122 3.878 11 N -0.680 5.680 12 C 0.015 3.985 13 C 0.460 3.540 14 F -0.193 7.193 15 F -0.183 7.183 16 F -0.182 7.182 17 C -0.181 4.181 18 C -0.157 4.157 19 H 0.259 0.741 20 H 0.015 0.985 21 H 0.065 0.935 22 H 0.348 0.652 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.573 -7.048 7.792 10.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.173 4.173 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.016 3.984 10 C -0.007 4.007 11 N -0.312 5.312 12 C -0.116 4.116 13 C 0.406 3.594 14 F -0.175 7.175 15 F -0.165 7.165 16 F -0.164 7.164 17 C -0.218 4.218 18 C -0.195 4.195 19 H 0.068 0.932 20 H 0.033 0.967 21 H 0.083 0.917 22 H 0.167 0.833 23 H 0.100 0.900 24 H 0.149 0.851 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.531 -7.543 7.584 10.992 hybrid contribution 0.194 1.859 0.355 1.902 sum 2.726 -5.684 7.939 10.137 Atomic orbital electron populations 1.70099 1.06877 1.27093 1.50349 1.25611 0.95492 1.01583 0.94597 0.85732 0.79337 0.80540 0.77407 1.19331 1.21067 1.20787 1.20737 0.92631 0.90211 1.50630 0.93125 1.18925 0.98804 0.93065 0.87584 1.21247 0.88637 0.96989 0.93820 1.60367 1.19169 1.37353 1.14275 1.23176 0.91431 1.05163 0.91803 1.20597 0.87826 0.73859 0.77165 1.93162 1.80574 1.47929 1.95805 1.93170 1.93821 1.86670 1.42819 1.93178 1.79192 1.67372 1.76636 1.22869 0.98450 0.96515 1.03948 1.22407 0.92064 1.01754 1.03279 0.93210 0.96675 0.91663 0.83287 0.90031 0.85115 0.91365 0.89291 0.90721 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.90 12.65 21.45 0.27 -49.63 15 2 C 0.03 1.45 5.43 84.65 0.46 1.91 15 3 Si 0.94 42.32 29.54 68.60 2.03 44.35 15 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 7 C -0.50 -26.37 8.33 25.60 0.21 -26.16 15 8 H 0.05 2.70 7.82 -2.91 -0.02 2.68 15 9 C 0.02 0.79 1.65 -52.93 -0.09 0.70 15 10 C 0.12 4.90 5.54 86.30 0.48 5.37 15 11 N -0.68 -24.05 6.39 -513.89 -3.29 -27.34 15 12 C 0.02 0.41 5.68 86.30 0.49 0.90 15 13 C 0.46 12.46 3.29 71.98 0.24 12.70 15 14 F -0.19 -5.78 16.79 44.97 0.75 -5.03 15 15 F -0.18 -4.57 17.32 44.97 0.78 -3.79 15 16 F -0.18 -5.41 17.24 44.97 0.78 -4.64 15 17 C -0.18 -7.62 9.96 30.62 0.30 -7.32 15 18 C -0.16 -7.17 9.14 30.62 0.28 -6.89 15 19 H 0.26 13.69 8.32 -92.71 -0.77 12.92 15 20 H 0.01 0.67 8.14 -2.39 -0.02 0.65 15 21 H 0.07 2.35 8.08 -2.38 -0.02 2.33 15 22 H 0.35 13.41 7.83 -89.69 -0.70 12.71 15 23 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 24 H 0.13 2.94 8.14 -2.39 -0.02 2.92 15 25 H 0.07 2.93 8.14 -2.39 -0.02 2.91 15 26 H 0.09 3.33 8.14 -2.39 -0.02 3.31 15 27 H 0.07 3.13 8.14 -2.39 -0.02 3.11 15 28 H 0.06 2.85 8.14 -2.38 -0.02 2.83 15 Total: -1.00 -55.54 259.30 4.17 -51.38 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.47 Total: 13.48 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 2.38 Total: -18.78 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -3.01 Total: -76.97 kcal Atomic # 9 Polarization: -15.77 SS G_CDS: 2.31 Total: -13.46 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -55.54 4.17 -51.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.419 kcal (2) G-P(sol) polarization free energy of solvation -55.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds