Wall clock time and date at job start Mon Mar 30 2020 20:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86796 * 120.00058 * 2 1 4 4 H 1.48509 * 109.47000 * 274.97697 * 3 2 1 5 5 H 1.48501 * 109.47413 * 34.97284 * 3 2 1 6 6 H 1.48497 * 109.47411 * 154.97954 * 3 2 1 7 7 C 1.40333 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00065 * 186.06224 * 7 2 1 9 9 C 1.39799 * 120.00245 * 6.06332 * 7 2 1 10 10 N 1.32812 * 125.80219 * 354.26396 * 9 7 2 11 11 C 1.33052 * 108.65323 * 179.74389 * 10 9 7 12 12 C 1.35939 * 107.98264 * 0.38165 * 11 10 9 13 13 C 1.50698 * 126.32308 * 179.89179 * 12 11 10 14 14 C 1.53179 * 109.61777 * 120.10875 * 13 12 11 15 15 C 1.53098 * 109.16190 * 176.89110 * 14 13 12 16 16 O 1.42900 * 109.41422 * 302.39310 * 15 14 13 17 17 C 1.42905 * 114.10020 * 61.15652 * 16 15 14 18 18 C 1.53084 * 109.41770 * 298.84310 * 17 16 15 19 19 O 1.34595 * 107.35609 * 359.62376 * 12 11 10 20 20 H 0.97001 * 119.99846 * 0.02562 * 1 2 3 21 21 H 1.08008 * 126.00968 * 180.23009 * 11 10 9 22 22 H 1.08999 * 109.54267 * 359.88200 * 13 12 11 23 23 H 1.08997 * 109.51999 * 56.98394 * 14 13 12 24 24 H 1.09001 * 109.52046 * 296.79824 * 14 13 12 25 25 H 1.08996 * 109.47788 * 182.40736 * 15 14 13 26 26 H 1.09005 * 109.47861 * 62.37298 * 15 14 13 27 27 H 1.08998 * 109.47819 * 58.82772 * 17 16 15 28 28 H 1.09003 * 109.47813 * 178.84733 * 17 16 15 29 29 H 1.09001 * 109.52800 * 177.51392 * 18 17 16 30 30 H 1.09004 * 109.52216 * 297.63881 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3826 2.1071 -1.3949 5 1 1.4943 2.6201 0.8025 6 1 3.5865 1.4121 0.5921 7 6 2.0079 -1.2153 0.0005 8 1 3.0834 -1.2180 0.0993 9 6 1.3148 -2.4227 -0.1268 10 7 -0.0059 -2.5620 -0.1474 11 6 -0.2955 -3.8531 -0.2871 12 6 0.8751 -4.5417 -0.3473 13 6 1.0264 -6.0331 -0.5011 14 6 1.8104 -6.3412 -1.7805 15 6 2.0253 -7.8533 -1.8863 16 8 2.7131 -8.3179 -0.7230 17 6 2.0058 -8.0994 0.4993 18 6 1.7901 -6.5973 0.7010 19 8 1.8739 -3.6448 -0.2501 20 1 -0.4850 0.8401 -0.0004 21 1 -1.2864 -4.2794 -0.3405 22 1 0.0411 -6.4958 -0.5568 23 1 2.7764 -5.8375 -1.7459 24 1 1.2472 -5.9918 -2.6458 25 1 2.6196 -8.0748 -2.7727 26 1 1.0596 -8.3533 -1.9615 27 1 1.0399 -8.6027 0.4552 28 1 2.5860 -8.4985 1.3313 29 1 1.2123 -6.4311 1.6102 30 1 2.7557 -6.0990 0.7868 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260200708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:10 Heat of formation + Delta-G solvation = -47.629360 kcal Electronic energy + Delta-G solvation = -15129.060200 eV Core-core repulsion = 12504.215491 eV Total energy + Delta-G solvation = -2624.844708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.03024 -38.91515 -34.16115 -33.52534 -32.37082 -30.87411 -28.90602 -26.31668 -23.54640 -23.25978 -21.04058 -20.24804 -19.21906 -17.38246 -16.11857 -15.82928 -15.46380 -14.59349 -14.58320 -14.43353 -13.93345 -13.37784 -13.06781 -12.65342 -12.13412 -11.70817 -11.33888 -11.31662 -11.06382 -11.00242 -10.67465 -10.49522 -10.34542 -9.99837 -9.64213 -9.36817 -9.14487 -8.10843 -7.29847 -6.67246 -4.58888 2.89085 3.05958 3.10906 3.29238 3.86352 4.02706 4.40607 4.64827 5.09715 5.12027 5.25796 5.34563 5.37554 5.45716 5.57099 5.76133 5.83679 5.95052 6.18558 6.19858 6.27394 6.53543 6.60411 6.73520 6.88042 7.11940 7.33567 7.73722 7.99472 8.18334 8.56163 8.80103 10.00908 10.26932 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.059342 B = 0.006327 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.729055 B = 4424.342317 C = 4566.633768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.076 3.924 3 Si 0.926 3.074 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.438 4.438 8 H 0.091 0.909 9 C 0.330 3.670 10 N -0.539 5.539 11 C -0.003 4.003 12 C -0.198 4.198 13 C 0.029 3.971 14 C -0.149 4.149 15 C 0.062 3.938 16 O -0.388 6.388 17 C 0.062 3.938 18 C -0.149 4.149 19 O -0.241 6.241 20 H 0.278 0.722 21 H 0.142 0.858 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 -9.210 -1.080 9.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.149 4.149 3 Si 0.749 3.251 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.109 0.891 9 C 0.147 3.853 10 N -0.269 5.269 11 C -0.148 4.148 12 C -0.253 4.253 13 C 0.010 3.990 14 C -0.187 4.187 15 C -0.015 4.015 16 O -0.307 6.307 17 C -0.015 4.015 18 C -0.187 4.187 19 O -0.137 6.137 20 H 0.089 0.911 21 H 0.159 0.841 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.458 -8.651 -1.022 8.832 hybrid contribution 0.362 0.328 -0.059 0.492 sum 1.820 -8.323 -1.081 8.588 Atomic orbital electron populations 1.70008 1.07238 1.28537 1.29517 1.25850 0.94955 1.00759 0.93310 0.86023 0.80189 0.79731 0.79151 1.19302 1.19931 1.18356 1.18128 0.94874 0.86219 1.48127 0.89121 1.22294 0.86866 0.83196 0.92985 1.71441 1.12058 1.14454 1.28996 1.22951 0.96804 0.91845 1.03238 1.22204 0.87251 0.90885 1.24929 1.19128 0.98288 0.87786 0.93818 1.22281 1.01941 0.95824 0.98682 1.22608 0.96740 0.93922 0.88197 1.87882 1.46485 1.81560 1.14729 1.22607 0.96466 0.95578 0.86819 1.22278 1.02011 0.95403 0.99035 1.84363 1.36863 1.17476 1.75048 0.91095 0.84051 0.90328 0.90838 0.90958 0.89222 0.93466 0.93466 0.89225 0.90957 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.07 11.91 55.57 0.66 -19.41 16 2 C 0.08 1.99 5.49 -17.28 -0.09 1.90 16 3 Si 0.93 18.84 29.57 -169.99 -5.03 13.81 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.44 -12.26 9.45 -38.21 -0.36 -12.62 16 8 H 0.09 2.37 7.86 -52.48 -0.41 1.95 16 9 C 0.33 9.67 7.73 -16.54 -0.13 9.54 16 10 N -0.54 -15.86 9.45 -13.43 -0.13 -15.98 16 11 C 0.00 -0.07 11.80 -17.85 -0.21 -0.28 16 12 C -0.20 -4.66 5.94 -35.13 -0.21 -4.87 16 13 C 0.03 0.51 2.69 -91.59 -0.25 0.27 16 14 C -0.15 -2.43 5.41 -26.59 -0.14 -2.57 16 15 C 0.06 0.83 6.84 37.21 0.25 1.08 16 16 O -0.39 -5.80 10.77 -35.23 -0.38 -6.18 16 17 C 0.06 0.83 6.84 37.20 0.25 1.08 16 18 C -0.15 -2.43 5.40 -26.59 -0.14 -2.57 16 19 O -0.24 -6.54 10.82 3.09 0.03 -6.51 16 20 H 0.28 6.84 8.29 -40.82 -0.34 6.50 16 21 H 0.14 3.08 8.06 -52.48 -0.42 2.66 16 22 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 23 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 258.89 15.07 3.90 3.90 Total: -1.00 -31.67 258.89 -5.74 -37.41 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -3.77 Total: 2.01 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.03 Total: -9.04 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.53 Total: -35.39 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.35 Total: -12.69 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.67 -5.74 -37.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260200708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.222 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds