Wall clock time and date at job start Mon Mar 30 2020 20:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38222 * 120.00781 * 2 1 4 4 C 1.38230 * 120.01866 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.97040 * 180.27529 * 4 3 2 6 6 C 1.38265 * 120.05232 * 0.02562 * 4 3 2 7 7 C 1.50703 * 119.98456 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47253 * 325.00067 * 7 6 4 9 9 N 1.46892 * 109.47153 * 204.99932 * 7 6 4 10 10 C 1.50701 * 109.46962 * 84.99756 * 7 6 4 11 11 H 1.07998 * 120.00118 * 0.02562 * 10 7 6 12 12 C 1.37875 * 120.00061 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00150 * 179.97438 * 12 10 7 14 14 Si 1.86801 * 119.99975 * 0.02562 * 12 10 7 15 15 H 1.48495 * 109.47469 * 89.99127 * 14 12 10 16 16 H 1.48502 * 109.47343 * 209.99636 * 14 12 10 17 17 H 1.48505 * 109.46665 * 329.99139 * 14 12 10 18 18 C 1.38170 * 120.02652 * 359.97438 * 6 4 3 19 19 C 1.38437 * 120.01443 * 180.02562 * 2 1 3 20 20 F 1.35097 * 120.02235 * 359.96128 * 19 2 1 21 21 H 1.09003 * 109.47307 * 269.97741 * 1 2 3 22 22 H 1.08997 * 109.46988 * 29.97716 * 1 2 3 23 23 H 1.08999 * 109.46853 * 149.97969 * 1 2 3 24 24 H 1.07993 * 119.99336 * 0.04208 * 3 2 1 25 25 H 1.09001 * 109.47542 * 269.73006 * 5 4 3 26 26 H 1.09007 * 109.47301 * 29.72796 * 5 4 3 27 27 H 1.09002 * 109.46651 * 149.72261 * 5 4 3 28 28 H 1.00906 * 111.00275 * 300.00205 * 9 7 6 29 29 H 1.00901 * 110.99948 * 63.95392 * 9 7 6 30 30 H 0.96999 * 119.99695 * 180.02562 * 13 12 10 31 31 H 1.08001 * 120.01158 * 180.02562 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5807 1.1972 -0.0005 5 6 4.3332 2.5028 0.0057 6 6 4.2733 0.0006 -0.0016 7 6 5.7803 0.0026 -0.0028 8 1 6.1421 0.8452 -0.5921 9 7 6.2712 -1.2516 -0.5890 10 6 6.2835 0.1266 1.4123 11 1 5.5823 0.1964 2.2307 12 6 7.6392 0.1498 1.6624 13 7 8.0784 0.2584 2.8972 14 14 8.8523 0.0283 0.2470 15 1 9.1720 1.3908 -0.2493 16 1 10.0966 -0.6322 0.7167 17 1 8.2523 -0.7707 -0.8518 18 6 3.5843 -1.1971 -0.0016 19 6 2.1996 -1.1987 -0.0005 20 9 1.5248 -2.3691 -0.0003 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6584 2.1322 0.0007 25 1 4.5185 2.8204 -1.0204 26 1 3.7417 3.2607 0.5194 27 1 5.2838 2.3717 0.5229 28 1 5.9492 -2.0484 -0.0602 29 1 6.0012 -1.3278 -1.5582 30 1 9.0322 0.2751 3.0730 31 1 4.1256 -2.1317 -0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260033607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:07 Heat of formation + Delta-G solvation = -27.151526 kcal Electronic energy + Delta-G solvation = -15194.646978 eV Core-core repulsion = 12583.063045 eV Total energy + Delta-G solvation = -2611.583933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.52931 -39.20831 -35.23107 -32.49693 -32.00824 -30.83937 -27.33789 -26.31360 -25.57098 -22.59525 -21.01153 -19.62321 -16.99277 -16.60544 -16.22588 -15.32448 -14.83927 -14.59113 -14.06860 -13.59100 -13.39868 -13.27288 -13.07011 -12.81521 -12.50507 -12.17760 -11.69812 -11.46791 -11.23396 -10.92532 -10.81963 -10.71383 -10.13592 -9.90683 -9.32123 -8.58174 -8.33229 -7.78826 -7.27898 -6.04109 -4.15178 1.61624 1.69762 3.47835 3.59291 3.90136 4.00906 4.65315 4.67274 5.00391 5.08254 5.25307 5.37206 5.51459 5.66764 5.69182 5.79477 5.87821 5.97399 6.06942 6.14061 6.33434 6.48075 6.54887 6.65746 6.75047 6.94072 7.15099 7.38872 7.56004 8.12121 8.28562 8.64313 8.96265 9.59229 11.05235 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.037930 B = 0.008660 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.018637 B = 3232.325589 C = 3520.803035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.142 4.142 3 C -0.097 4.097 4 C -0.085 4.085 5 C -0.119 4.119 6 C -0.044 4.044 7 C 0.218 3.782 8 H 0.053 0.947 9 N -0.836 5.836 10 C -0.519 4.519 11 H 0.070 0.930 12 C 0.086 3.914 13 N -0.897 5.897 14 Si 0.864 3.136 15 H -0.296 1.296 16 H -0.304 1.304 17 H -0.192 1.192 18 C -0.155 4.155 19 C 0.085 3.915 20 F -0.148 7.148 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.123 0.877 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.331 0.669 29 H 0.309 0.691 30 H 0.264 0.736 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.957 0.810 -7.961 13.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.143 4.143 3 C -0.116 4.116 4 C -0.085 4.085 5 C -0.176 4.176 6 C -0.046 4.046 7 C 0.109 3.891 8 H 0.071 0.929 9 N -0.366 5.366 10 C -0.557 4.557 11 H 0.088 0.912 12 C -0.118 4.118 13 N -0.533 5.533 14 Si 0.691 3.309 15 H -0.224 1.224 16 H -0.231 1.231 17 H -0.113 1.113 18 C -0.174 4.174 19 C 0.066 3.934 20 F -0.127 7.127 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.141 0.859 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.145 0.855 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.100 1.032 -7.692 12.737 hybrid contribution -0.466 -0.505 -0.426 0.808 sum -10.566 0.527 -8.118 13.335 Atomic orbital electron populations 1.20615 0.90964 1.02461 1.02177 1.19695 0.96275 0.92083 1.06261 1.20728 0.93621 0.96454 1.00759 1.19840 0.92942 0.95874 0.99893 1.20870 1.02038 0.92974 1.01686 1.21032 0.99777 0.90979 0.92811 1.18661 0.83474 0.89750 0.97235 0.92922 1.60052 1.66112 1.05739 1.04676 1.20634 0.92600 1.52963 0.89493 0.91219 1.24978 0.98630 0.92292 0.95908 1.69952 1.14679 1.48790 1.19927 0.87235 0.78770 0.78510 0.86388 1.22376 1.23099 1.11334 1.20921 0.91630 0.99801 1.05035 1.17481 0.90034 0.80528 1.05359 1.91414 1.80537 1.46487 1.94272 0.91458 0.91566 0.91819 0.85908 0.92010 0.92365 0.88662 0.85497 0.87973 0.92707 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.84 36.01 0.35 -0.95 16 2 C -0.14 -2.26 5.89 -104.55 -0.62 -2.88 16 3 C -0.10 -1.54 9.35 -39.59 -0.37 -1.91 16 4 C -0.08 -1.53 5.88 -104.62 -0.62 -2.14 16 5 C -0.12 -1.97 9.21 36.01 0.33 -1.64 16 6 C -0.04 -0.86 4.98 -104.64 -0.52 -1.38 16 7 C 0.22 4.77 1.67 -70.02 -0.12 4.65 16 8 H 0.05 1.16 6.43 -51.93 -0.33 0.83 16 9 N -0.84 -16.72 5.43 -6.65 -0.04 -16.75 16 10 C -0.52 -13.93 8.50 -34.44 -0.29 -14.22 16 11 H 0.07 2.10 7.98 -52.49 -0.42 1.68 16 12 C 0.09 2.43 5.47 -17.82 -0.10 2.34 16 13 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 14 Si 0.86 21.02 26.94 -169.99 -4.58 16.44 16 15 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 17 H -0.19 -4.31 5.17 56.52 0.29 -4.01 16 18 C -0.15 -2.89 9.25 -39.52 -0.37 -3.25 16 19 C 0.09 1.50 7.24 -39.42 -0.29 1.21 16 20 F -0.15 -2.54 16.48 2.25 0.04 -2.50 16 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 23 H 0.06 0.76 7.64 -51.93 -0.40 0.36 16 24 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 27 H 0.09 1.86 6.16 -51.93 -0.32 1.54 16 28 H 0.33 6.47 7.20 -39.29 -0.28 6.18 16 29 H 0.31 5.34 9.06 -39.29 -0.36 4.98 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.13 2.29 6.29 -52.49 -0.33 1.96 16 LS Contribution 259.04 15.07 3.90 3.90 Total: -1.00 -29.92 259.04 -6.29 -36.21 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -3.79 Total: 9.29 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -2.59 Total: -20.18 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.74 Total: -43.16 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.58 Total: 16.44 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.92 -6.29 -36.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260033607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.056 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds