Wall clock time and date at job start Mon Mar 30 2020 20:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47382 * 2 1 4 4 C 1.53005 * 109.46964 * 120.00037 * 2 1 3 5 5 H 1.09005 * 109.47032 * 55.21996 * 4 2 1 6 6 C 1.50698 * 109.47065 * 175.21878 * 4 2 1 7 7 H 1.07994 * 120.00161 * 119.99826 * 6 4 2 8 8 C 1.37879 * 119.99979 * 299.99945 * 6 4 2 9 9 N 1.31514 * 120.00039 * 180.02562 * 8 6 4 10 10 Si 1.86807 * 120.00094 * 0.02562 * 8 6 4 11 11 H 1.48488 * 109.46981 * 89.99776 * 10 8 6 12 12 H 1.48496 * 109.46924 * 210.00232 * 10 8 6 13 13 H 1.48500 * 109.46756 * 329.99777 * 10 8 6 14 14 N 1.46891 * 109.47011 * 295.21816 * 4 2 1 15 15 C 1.46906 * 111.00075 * 154.15256 * 14 4 2 16 16 C 1.50695 * 109.47051 * 175.93249 * 15 14 4 17 17 C 1.34513 * 125.78826 * 89.72156 * 16 15 14 18 18 C 1.41392 * 106.84317 * 179.88582 * 17 16 15 19 19 C 1.34517 * 106.83748 * 0.37422 * 18 17 16 20 20 O 1.34307 * 108.42066 * 359.76585 * 19 18 17 21 21 H 1.09000 * 109.46767 * 305.49670 * 1 2 3 22 22 H 1.08995 * 109.46959 * 65.49265 * 1 2 3 23 23 H 1.08994 * 109.47040 * 185.49231 * 1 2 3 24 24 H 1.09007 * 109.47059 * 239.99626 * 2 1 3 25 25 H 1.09005 * 109.47581 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47497 * 299.99916 * 3 2 1 27 27 H 1.09007 * 109.47329 * 59.99791 * 3 2 1 28 28 H 0.97001 * 119.99758 * 180.02562 * 9 8 6 29 29 H 1.00903 * 111.00560 * 30.20420 * 14 4 2 30 30 H 1.08999 * 109.46686 * 55.93947 * 15 14 4 31 31 H 1.08993 * 109.47194 * 295.93392 * 15 14 4 32 32 H 1.08005 * 126.58181 * 0.02562 * 17 16 15 33 33 H 1.08001 * 126.57956 * 180.16223 * 18 17 16 34 34 H 1.07997 * 125.78670 * 179.75594 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6084 -1.7213 1.2931 6 6 3.5423 -0.8247 1.1915 7 1 4.1448 -0.3739 1.9662 8 6 4.1477 -1.4948 0.1496 9 7 5.4587 -1.5854 0.0994 10 14 3.1056 -2.2738 -1.1909 11 1 2.8838 -1.2895 -2.2802 12 1 3.8076 -3.4641 -1.7345 13 1 1.7972 -2.6872 -0.6231 14 7 1.6469 0.0346 2.4458 15 6 1.5491 -0.8469 3.6169 16 6 1.2427 -0.0235 4.8413 17 6 0.0144 0.2857 5.2941 18 6 0.1918 1.0649 6.4605 19 6 1.5181 1.1922 6.6459 20 8 2.1496 0.5309 5.6623 21 1 -0.3633 0.5967 0.8367 22 1 -0.3633 0.4263 -0.9350 23 1 -0.3633 -1.0229 0.0984 24 1 1.8934 -0.5139 -0.8900 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 5.8846 -2.0565 -0.6338 29 1 0.7811 0.5296 2.2927 30 1 2.4951 -1.3696 3.7581 31 1 0.7523 -1.5737 3.4591 32 1 -0.9269 -0.0072 4.8528 33 1 -0.5878 1.4811 7.0812 34 1 1.9942 1.7344 7.4494 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261044607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:49 Heat of formation + Delta-G solvation = 16.174249 kcal Electronic energy + Delta-G solvation = -15533.357852 eV Core-core repulsion = 13047.112970 eV Total energy + Delta-G solvation = -2486.244882 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.21182 -37.37573 -33.53835 -32.50325 -32.16695 -29.47230 -27.17012 -26.25273 -24.42381 -21.86092 -21.43994 -20.12000 -19.19434 -17.12123 -16.41931 -15.79129 -15.33634 -14.81557 -13.94571 -13.62366 -13.34275 -13.07695 -12.72044 -12.55362 -12.42615 -12.34705 -11.95258 -11.53054 -11.22955 -11.00177 -10.53216 -10.47105 -10.12262 -9.95121 -9.66686 -9.30673 -9.17128 -8.51472 -8.20713 -7.44890 -6.03734 -4.00314 2.04013 2.85648 3.25419 3.34600 3.35081 3.37460 4.40229 4.94098 5.18246 5.24888 5.25709 5.39527 5.65930 5.73211 5.77299 5.84172 6.03201 6.08391 6.19546 6.26556 6.41353 6.43745 6.49861 6.53001 6.76539 6.88094 6.91326 7.05937 7.35736 7.48408 7.69867 7.86325 8.18779 8.73381 9.09567 9.58871 11.09516 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.034153 B = 0.008030 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.653243 B = 3486.089370 C = 3880.716280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.123 4.123 4 C 0.195 3.805 5 H 0.003 0.997 6 C -0.493 4.493 7 H 0.082 0.918 8 C 0.069 3.931 9 N -0.899 5.899 10 Si 0.877 3.123 11 H -0.278 1.278 12 H -0.297 1.297 13 H -0.268 1.268 14 N -0.667 5.667 15 C 0.136 3.864 16 C 0.023 3.977 17 C -0.228 4.228 18 C -0.217 4.217 19 C -0.052 4.052 20 O -0.165 6.165 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.263 0.737 29 H 0.323 0.677 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 3.523 7.012 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.129 4.129 3 C -0.181 4.181 4 C 0.087 3.913 5 H 0.020 0.980 6 C -0.531 4.531 7 H 0.100 0.900 8 C -0.133 4.133 9 N -0.538 5.538 10 Si 0.708 3.292 11 H -0.205 1.205 12 H -0.224 1.224 13 H -0.193 1.193 14 N -0.299 5.299 15 C 0.007 3.993 16 C -0.028 4.028 17 C -0.248 4.248 18 C -0.236 4.236 19 C -0.120 4.120 20 O -0.059 6.059 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.960 3.612 7.003 12.700 hybrid contribution -1.573 -0.802 -0.935 1.998 sum -11.533 2.811 6.068 13.332 Atomic orbital electron populations 1.21979 0.97672 1.00636 1.00792 1.21676 0.92835 0.98319 1.00034 1.21549 1.02941 0.94534 0.99035 1.19658 0.97085 0.90168 0.84422 0.97988 1.20980 0.88773 1.33631 1.09733 0.89964 1.24929 0.94686 0.95940 0.97713 1.69883 1.08418 1.43139 1.32354 0.87013 0.80674 0.78551 0.82988 1.20474 1.22450 1.19310 1.60491 1.36267 1.29424 1.03744 1.20348 1.02542 0.91651 0.84788 1.22732 0.86791 0.99149 0.94171 1.21538 0.97857 1.05915 0.99480 1.21724 0.96379 1.05210 1.00297 1.23953 0.92299 1.01403 0.94361 1.84103 1.37252 1.52783 1.31789 0.93034 0.93478 0.93587 0.92168 0.91043 0.95430 0.92908 0.92726 0.85883 0.88472 0.93169 0.84062 0.84036 0.78641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.92 37.16 0.33 -2.26 16 2 C -0.11 -2.30 2.18 -90.62 -0.20 -2.49 16 3 C -0.12 -2.48 8.78 37.15 0.33 -2.15 16 4 C 0.19 4.43 1.32 -68.87 -0.09 4.34 16 5 H 0.00 0.06 6.90 -51.93 -0.36 -0.30 16 6 C -0.49 -13.55 8.14 -34.44 -0.28 -13.83 16 7 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 8 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 9 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 10 Si 0.88 21.57 24.41 -169.99 -4.15 17.42 16 11 H -0.28 -6.68 6.83 56.52 0.39 -6.30 16 12 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 14 N -0.67 -13.41 5.48 -109.22 -0.60 -14.01 16 15 C 0.14 2.49 5.98 -4.97 -0.03 2.46 16 16 C 0.02 0.39 6.87 -35.63 -0.24 0.15 16 17 C -0.23 -3.37 10.81 -39.70 -0.43 -3.80 16 18 C -0.22 -2.87 10.91 -39.70 -0.43 -3.30 16 19 C -0.05 -0.70 12.09 29.42 0.36 -0.35 16 20 O -0.16 -2.88 10.65 5.69 0.06 -2.82 16 21 H 0.05 0.78 6.61 -51.93 -0.34 0.44 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 1.38 3.21 -51.93 -0.17 1.21 16 25 H 0.07 1.63 7.37 -51.93 -0.38 1.25 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 1.00 7.16 -51.93 -0.37 0.62 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.32 5.82 6.10 -39.29 -0.24 5.58 16 30 H 0.10 1.97 7.97 -51.93 -0.41 1.56 16 31 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.14 1.82 8.06 -52.48 -0.42 1.39 16 33 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.20 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 274.84 15.07 4.14 4.14 Total: -1.00 -30.35 274.84 -5.40 -35.76 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.84 Total: 5.42 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.79 Total: -19.38 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.17 Total: -40.54 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: 0.06 Total: -2.82 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.15 Total: 17.42 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.35 -5.40 -35.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261044607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.930 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds