Wall clock time and date at job start Mon Mar 30 2020 20:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 H 1.09000 * 115.55864 * 330.68442 * 3 2 1 5 5 C 1.53000 * 117.50122 * 116.37472 * 3 2 1 6 6 C 1.52998 * 60.00100 * 107.48929 * 5 3 2 7 7 H 1.08995 * 117.49679 * 107.51022 * 6 5 3 8 8 C 1.53005 * 117.49840 * 252.51266 * 6 5 3 9 9 N 1.46892 * 109.46777 * 243.60565 * 8 6 5 10 10 C 1.46905 * 111.00081 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.47470 * 174.70344 * 10 9 8 12 12 C 1.50700 * 115.54790 * 65.17103 * 11 10 9 13 13 H 1.08000 * 119.99699 * 264.96637 * 12 11 10 14 14 C 1.37873 * 120.00147 * 84.96916 * 12 11 10 15 15 N 1.31509 * 120.00141 * 353.06024 * 14 12 11 16 16 Si 1.86806 * 119.99883 * 173.06550 * 14 12 11 17 17 H 1.48493 * 109.47347 * 59.99850 * 16 14 12 18 18 H 1.48506 * 109.46987 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47073 * 299.99779 * 16 14 12 20 20 C 1.53002 * 117.49774 * 279.50022 * 11 10 9 21 21 C 1.52999 * 117.49769 * 210.83884 * 11 10 9 22 22 H 1.09002 * 109.46578 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47133 * 300.00580 * 1 2 3 24 24 H 1.09001 * 109.46579 * 60.00579 * 1 2 3 25 25 H 1.09001 * 109.47434 * 239.99824 * 2 1 3 26 26 H 1.09006 * 109.46816 * 119.99817 * 2 1 3 27 27 H 1.09005 * 117.49661 * 359.97438 * 5 3 2 28 28 H 1.08999 * 117.52131 * 214.97198 * 5 3 2 29 29 H 1.08999 * 109.46879 * 123.60927 * 8 6 5 30 30 H 1.08995 * 109.47212 * 3.60779 * 8 6 5 31 31 H 1.00900 * 111.00467 * 56.04947 * 9 8 6 32 32 H 1.09002 * 109.46845 * 294.70180 * 10 9 8 33 33 H 1.09004 * 109.46874 * 54.69975 * 10 9 8 34 34 H 0.96996 * 120.00571 * 185.04341 * 15 14 12 35 35 H 1.08997 * 117.49973 * 0.02562 * 20 11 10 36 36 H 1.09000 * 117.49740 * 145.01948 * 20 11 10 37 37 H 1.09000 * 117.49870 * 214.97632 * 21 11 10 38 38 H 1.08995 * 117.49665 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 -0.4815 5 6 2.8440 1.9076 1.2158 6 6 3.5502 1.6579 -0.1182 7 1 3.8924 2.5288 -0.6772 8 6 4.4348 0.4143 -0.2273 9 7 5.8278 0.8225 -0.4518 10 6 6.7083 -0.3483 -0.5625 11 6 8.1222 0.1093 -0.9261 12 6 8.8239 0.9420 0.1158 13 1 8.7920 2.0199 0.0568 14 6 9.5066 0.3277 1.1441 15 7 9.4332 -0.9766 1.2953 16 14 10.5358 1.3482 2.3227 17 1 9.6670 2.3374 3.0094 18 1 11.1632 0.4568 3.3312 19 1 11.5949 2.0615 1.5647 20 6 8.4050 0.4304 -2.3951 21 6 8.9786 -0.8413 -1.7649 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.0091 1.1861 2.0160 28 1 2.7216 2.9428 1.5345 29 1 4.0970 -0.1996 -1.0623 30 1 4.3689 -0.1606 0.6964 31 1 6.1440 1.4454 0.2763 32 1 6.7313 -0.8769 0.3904 33 1 6.3311 -1.0144 -1.3386 34 1 9.8528 -1.4006 2.0602 35 1 7.5837 0.3160 -3.1024 36 1 9.0989 1.2436 -2.6079 37 1 10.0496 -0.8642 -1.5636 38 1 8.5348 -1.7929 -2.0574 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387835607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:42:42 Heat of formation + Delta-G solvation = 29.082354 kcal Electronic energy + Delta-G solvation = -15226.955678 eV Core-core repulsion = 12877.103629 eV Total energy + Delta-G solvation = -2349.852050 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.35909 -36.71533 -33.80899 -31.91058 -31.78197 -26.91939 -25.29986 -23.93654 -22.90092 -21.17470 -20.88673 -19.44519 -18.73250 -15.88603 -15.75949 -14.74196 -14.60601 -14.43484 -14.03992 -13.72472 -13.33938 -12.83004 -12.45902 -12.19519 -11.88348 -11.43207 -11.41690 -11.25042 -11.06148 -10.92391 -10.86354 -10.61961 -10.42586 -10.08988 -9.71762 -9.61721 -9.31682 -8.71100 -8.38430 -8.01495 -7.42534 -5.99132 -4.05042 3.31566 3.36727 3.39779 3.90914 4.42457 4.69387 4.77559 4.99455 5.16849 5.25913 5.29539 5.38940 5.51199 5.65335 5.70337 5.82452 5.92981 5.96239 6.00846 6.07523 6.12787 6.17417 6.29565 6.38946 6.52914 6.55059 6.63596 6.89788 6.90529 6.97768 7.21700 7.57554 7.61265 7.91517 8.07564 8.36540 8.54415 8.98020 9.60306 11.08882 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030427 B = 0.006081 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.019110 B = 4603.776766 C = 5071.994699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.152 4.152 4 H 0.100 0.900 5 C -0.182 4.182 6 C -0.138 4.138 7 H 0.110 0.890 8 C 0.091 3.909 9 N -0.680 5.680 10 C 0.106 3.894 11 C 0.050 3.950 12 C -0.493 4.493 13 H 0.059 0.941 14 C 0.070 3.930 15 N -0.881 5.881 16 Si 0.888 3.112 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.277 1.277 20 C -0.200 4.200 21 C -0.163 4.163 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.347 0.653 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.259 0.741 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.108 2.014 -1.301 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.170 4.170 4 H 0.118 0.882 5 C -0.219 4.219 6 C -0.157 4.157 7 H 0.128 0.872 8 C -0.039 4.039 9 N -0.312 5.312 10 C -0.022 4.022 11 C 0.049 3.951 12 C -0.530 4.530 13 H 0.077 0.923 14 C -0.133 4.133 15 N -0.518 5.518 16 Si 0.715 3.285 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.238 4.238 21 C -0.201 4.201 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.166 0.834 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.058 1.898 -1.888 13.329 hybrid contribution 0.659 0.167 1.668 1.802 sum -12.399 2.065 -0.219 12.572 Atomic orbital electron populations 1.21745 0.95869 1.01290 1.01601 1.21092 0.95427 0.94569 1.02136 1.22404 0.94017 0.97753 1.02854 0.88204 1.23167 1.05050 1.01842 0.91793 1.22460 0.92458 1.00886 0.99852 0.87157 1.21421 0.89761 0.93945 0.98800 1.60417 0.99993 1.18388 1.52365 1.21416 0.92356 0.90050 0.98418 1.18736 0.90819 0.97318 0.88194 1.20430 1.31253 0.92300 1.09063 0.92250 1.24999 0.95967 0.94741 0.97571 1.69980 1.44307 1.08736 1.28795 0.86739 0.80964 0.80118 0.80634 1.20292 1.21438 1.20214 1.22866 1.02411 0.99376 0.99107 1.22531 0.99592 0.91747 1.06219 0.92943 0.92853 0.92858 0.91553 0.91925 0.89073 0.89236 0.91721 0.96113 0.83394 0.94766 0.94588 0.93093 0.91698 0.90935 0.90366 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.87 37.16 0.37 -0.99 16 2 C -0.09 -1.05 5.30 -26.73 -0.14 -1.20 16 3 C -0.15 -1.80 5.74 -90.62 -0.52 -2.32 16 4 H 0.10 1.09 8.07 -51.93 -0.42 0.67 16 5 C -0.18 -2.30 9.82 -26.73 -0.26 -2.56 16 6 C -0.14 -1.97 5.95 -90.62 -0.54 -2.51 16 7 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 8 C 0.09 1.51 5.04 -3.83 -0.02 1.49 16 9 N -0.68 -13.71 6.47 -113.78 -0.74 -14.45 16 10 C 0.11 2.43 5.54 -3.82 -0.02 2.41 16 11 C 0.05 1.25 1.56 -155.66 -0.24 1.01 16 12 C -0.49 -13.32 8.33 -34.44 -0.29 -13.61 16 13 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 14 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 15 N -0.88 -24.97 12.95 55.43 0.72 -24.25 16 16 Si 0.89 21.08 29.55 -169.99 -5.02 16.06 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.20 -4.58 9.96 -26.69 -0.27 -4.84 16 21 C -0.16 -3.94 9.46 -26.69 -0.25 -4.20 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.76 7.60 -51.93 -0.39 0.37 16 26 H 0.06 0.72 7.88 -51.93 -0.41 0.32 16 27 H 0.09 1.18 7.92 -51.93 -0.41 0.77 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.06 7.60 -51.93 -0.39 0.67 16 30 H 0.02 0.36 7.88 -51.93 -0.41 -0.05 16 31 H 0.35 7.35 8.30 -39.29 -0.33 7.03 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 37 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 313.11 15.07 4.72 4.72 Total: -1.00 -27.42 313.11 -9.56 -36.98 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.96 Total: 6.46 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -2.28 Total: -25.51 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.02 Total: -38.70 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.42 -9.56 -36.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387835607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.066 kcal (2) G-P(sol) polarization free energy of solvation -27.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds