Wall clock time and date at job start Mon Mar 30 2020 20:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46896 * 111.00328 * 2 1 4 4 C 1.52998 * 109.47008 * 66.04713 * 3 2 1 5 5 C 1.50703 * 109.47261 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99428 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00124 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00155 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99924 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47326 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47042 * 119.99675 * 9 7 5 12 12 H 1.48498 * 109.47343 * 239.99866 * 9 7 5 13 13 C 1.46904 * 110.99868 * 236.04589 * 2 1 3 14 14 C 1.53002 * 109.47047 * 293.95575 * 13 2 1 15 15 H 1.09003 * 115.56215 * 29.31258 * 14 13 2 16 16 C 1.52999 * 117.50046 * 243.62097 * 14 13 2 17 17 C 1.53000 * 117.49983 * 174.99634 * 14 13 2 18 18 H 1.09000 * 117.52282 * 214.97109 * 17 14 13 19 19 C 1.53006 * 117.49504 * 0.02562 * 17 14 13 20 20 C 1.53001 * 117.49866 * 248.63253 * 19 17 14 21 21 C 1.53000 * 117.49497 * 180.02562 * 19 17 14 22 22 H 1.08997 * 109.47461 * 183.95297 * 1 2 3 23 23 H 1.09004 * 109.46856 * 303.95458 * 1 2 3 24 24 H 1.08996 * 109.47084 * 63.94722 * 1 2 3 25 25 H 1.09002 * 109.47158 * 186.04702 * 3 2 1 26 26 H 1.08999 * 109.46942 * 306.04872 * 3 2 1 27 27 H 1.09002 * 109.47152 * 299.99993 * 4 3 2 28 28 H 1.08999 * 109.47140 * 60.00279 * 4 3 2 29 29 H 0.97008 * 120.00398 * 180.02562 * 8 7 5 30 30 H 1.08992 * 109.47079 * 173.95390 * 13 2 1 31 31 H 1.09002 * 109.46883 * 53.95103 * 13 2 1 32 32 H 1.08995 * 117.50154 * 145.01915 * 16 14 13 33 33 H 1.08998 * 117.51375 * 359.97438 * 16 14 13 34 34 H 1.08996 * 115.55031 * 34.34738 * 19 17 14 35 35 H 1.08996 * 117.49555 * 359.97438 * 20 19 17 36 36 H 1.08995 * 117.49577 * 145.02406 * 20 19 17 37 37 H 1.08998 * 117.49694 * 214.97781 * 21 19 17 38 38 H 1.08998 * 117.50118 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1712 3.4645 1.3181 6 1 2.7192 3.8324 0.4633 7 6 1.9660 4.2816 2.4094 8 7 1.2991 3.8334 3.4504 9 14 2.6355 6.0255 2.4094 10 1 3.3437 6.2840 1.1299 11 1 1.5132 6.9866 2.5574 12 1 3.5824 6.1923 3.5411 13 6 1.9954 -0.7660 -1.1376 14 6 1.6314 -2.2426 -0.9704 15 1 0.7107 -2.4408 -0.4215 16 6 2.7804 -3.2393 -0.8057 17 6 1.9899 -3.1927 -2.1148 18 1 1.3055 -4.0161 -2.3191 19 6 2.6855 -2.5934 -3.3387 20 6 1.8952 -2.5461 -4.6480 21 6 3.0435 -3.5433 -4.4835 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8525 24 1 -0.3633 0.4513 -0.9232 25 1 3.0798 1.3443 -0.1083 26 1 1.5611 1.9273 -0.8309 27 1 0.5473 2.0844 1.4265 28 1 2.0659 1.5014 2.1491 29 1 1.1544 4.4084 4.2182 30 1 3.0796 -0.6611 -1.1757 31 1 1.5610 -0.3873 -2.0628 32 1 2.6159 -4.0931 -0.1485 33 1 3.7959 -2.8434 -0.8170 34 1 3.3709 -1.7709 -3.1342 35 1 0.8799 -2.9423 -4.6375 36 1 2.0604 -1.6922 -5.3049 37 1 3.9643 -3.3456 -5.0323 38 1 2.7838 -4.5952 -4.3645 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698235607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:31 Heat of formation + Delta-G solvation = 40.238588 kcal Electronic energy + Delta-G solvation = -15013.151013 eV Core-core repulsion = 12663.782734 eV Total energy + Delta-G solvation = -2349.368279 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.99560 -36.89359 -35.08348 -32.91759 -29.76590 -27.12357 -25.51861 -23.82338 -22.91473 -22.40014 -20.96410 -19.84938 -18.97627 -16.56304 -15.93977 -15.47276 -14.78528 -14.49103 -14.41805 -13.66982 -13.47158 -12.82676 -12.65432 -12.13254 -11.86159 -11.71879 -11.46936 -11.35931 -11.07394 -11.06053 -10.94453 -10.79868 -10.60191 -10.46843 -9.84176 -9.67326 -9.50314 -9.22739 -9.05834 -8.30575 -7.63371 -5.96995 -3.99162 3.32782 3.40030 3.43787 3.44769 4.12386 4.41234 4.42046 4.57368 4.79956 4.85001 5.11002 5.19653 5.21891 5.34776 5.38892 5.49370 5.59403 5.73460 5.76582 5.85095 5.90184 5.97089 5.97616 6.06221 6.08932 6.25033 6.32203 6.40991 6.51838 6.58737 7.01456 7.56590 7.63457 7.84758 7.94579 8.12496 8.47078 9.08434 9.64314 11.14474 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.047443 B = 0.004598 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.039169 B = 6088.520404 C = 6335.126571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.063 3.937 4 C 0.027 3.973 5 C -0.521 4.521 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.087 3.913 14 C -0.131 4.131 15 H 0.108 0.892 16 C -0.167 4.167 17 C -0.128 4.128 18 H 0.100 0.900 19 C -0.118 4.118 20 C -0.178 4.178 21 C -0.180 4.180 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.016 0.984 25 H 0.059 0.941 26 H 0.018 0.982 27 H 0.017 0.983 28 H 0.025 0.975 29 H 0.259 0.741 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 -13.820 -12.633 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.560 4.560 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.041 4.041 14 C -0.149 4.149 15 H 0.126 0.874 16 C -0.204 4.204 17 C -0.146 4.146 18 H 0.118 0.882 19 C -0.137 4.137 20 C -0.215 4.215 21 C -0.217 4.217 22 H 0.075 0.925 23 H 0.096 0.904 24 H 0.034 0.966 25 H 0.077 0.923 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.948 -13.985 -12.031 18.472 hybrid contribution 0.045 1.356 -0.649 1.504 sum 0.993 -12.629 -12.680 17.924 Atomic orbital electron populations 1.22406 0.88257 1.00826 1.00813 1.62044 1.07504 1.15759 1.41176 1.22334 0.98435 0.85244 1.00351 1.19108 0.96926 0.94004 0.90995 1.21243 1.35010 0.97819 1.01896 0.92788 1.24991 0.95330 0.98447 0.95567 1.69984 1.40947 1.36298 1.06032 0.86550 0.78735 0.84812 0.77972 1.19792 1.21048 1.20988 1.21625 0.99480 0.90906 0.92095 1.22401 0.99776 0.92125 1.00638 0.87442 1.23040 0.96996 1.01808 0.98522 1.21833 1.02722 1.01435 0.88654 0.88225 1.21711 1.02256 1.01196 0.88493 1.22912 0.96716 1.01826 1.00092 1.22920 0.99587 0.96565 1.02666 0.92507 0.90403 0.96558 0.92281 0.96337 0.96425 0.95706 0.93081 0.91297 0.95065 0.89024 0.88768 0.87693 0.88901 0.88917 0.88986 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.17 60.06 0.55 0.99 16 2 N -0.54 -10.22 4.76 -242.92 -1.16 -11.38 16 3 C 0.06 1.38 4.90 -3.83 -0.02 1.36 16 4 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 5 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 6 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.09 1.35 4.04 -3.82 -0.02 1.33 16 14 C -0.13 -1.73 5.69 -90.62 -0.52 -2.24 16 15 H 0.11 1.45 6.38 -51.93 -0.33 1.12 16 16 C -0.17 -1.95 9.90 -26.73 -0.26 -2.22 16 17 C -0.13 -1.41 5.85 -90.62 -0.53 -1.94 16 18 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.12 -1.25 5.10 -90.62 -0.46 -1.71 16 20 C -0.18 -1.70 10.25 -26.74 -0.27 -1.97 16 21 C -0.18 -1.62 10.25 -26.74 -0.27 -1.89 16 22 H 0.06 0.85 6.33 -51.93 -0.33 0.52 16 23 H 0.08 1.51 6.30 -51.93 -0.33 1.18 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 26 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 27 H 0.02 0.49 6.47 -51.93 -0.34 0.15 16 28 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.07 1.06 7.41 -51.93 -0.38 0.68 16 31 H 0.03 0.48 8.00 -51.93 -0.42 0.07 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.12 8.03 -51.93 -0.42 0.70 16 34 H 0.10 1.18 7.35 -51.93 -0.38 0.80 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 307.04 15.07 4.63 4.63 Total: -1.00 -30.05 307.04 -9.85 -39.89 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.68 Total: -2.08 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -2.35 Total: -21.45 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.42 Total: -37.84 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.05 -9.85 -39.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698235607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.131 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds