Wall clock time and date at job start Mon Mar 30 2020 20:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35450 * 126.77383 * 2 1 4 4 C 1.41383 * 103.98120 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.79875 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47313 * 325.00615 * 5 4 3 7 7 C 1.53005 * 109.46643 * 85.00614 * 5 4 3 8 8 N 1.46901 * 109.46963 * 205.00213 * 5 4 3 9 9 C 1.46899 * 110.99702 * 85.56088 * 8 5 4 10 10 H 1.08996 * 109.47502 * 326.66902 * 9 8 5 11 11 C 1.53005 * 109.47194 * 86.66868 * 9 8 5 12 12 C 1.50699 * 109.47007 * 206.66970 * 9 8 5 13 13 H 1.08001 * 119.99789 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00043 * 180.02562 * 12 9 8 15 15 N 1.31512 * 120.00101 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00081 * 179.97438 * 14 12 9 17 17 H 1.48505 * 109.46799 * 89.99954 * 16 14 12 18 18 H 1.48496 * 109.47070 * 209.99938 * 16 14 12 19 19 H 1.48498 * 109.47192 * 330.00390 * 16 14 12 20 20 N 1.30176 * 106.39730 * 0.02562 * 4 3 2 21 21 O 1.20922 * 111.60246 * 359.97438 * 20 4 3 22 22 H 1.08997 * 109.46933 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46296 * 300.01245 * 1 2 3 24 24 H 1.08998 * 109.47105 * 60.01218 * 1 2 3 25 25 H 1.07996 * 128.00881 * 0.02562 * 3 2 1 26 26 H 1.09000 * 109.46820 * 176.95943 * 7 5 4 27 27 H 1.09001 * 109.47324 * 296.95874 * 7 5 4 28 28 H 1.08992 * 109.47310 * 56.96292 * 7 5 4 29 29 H 1.00902 * 110.99985 * 209.51091 * 8 5 4 30 30 H 1.08994 * 109.46921 * 186.27936 * 11 9 8 31 31 H 1.08991 * 109.46965 * 306.28598 * 11 9 8 32 32 H 1.09004 * 109.46876 * 66.28182 * 11 9 8 33 33 H 0.97003 * 119.99969 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5372 0.0006 5 6 4.9211 1.3001 0.0003 6 1 4.8085 2.2096 -0.5896 7 6 5.2971 1.6674 1.4373 8 7 5.9789 0.4650 -0.5843 9 6 5.9955 0.5850 -2.0483 10 1 4.9789 0.7331 -2.4123 11 6 6.8611 1.7802 -2.4522 12 6 6.5657 -0.6740 -2.6490 13 1 6.8842 -1.4823 -2.0074 14 6 6.6816 -0.7936 -4.0177 15 7 6.2951 0.1912 -4.7989 16 14 7.3891 -2.3539 -4.7623 17 1 6.2919 -3.3209 -5.0201 18 1 8.0714 -2.0273 -6.0401 19 1 8.3661 -2.9540 -3.8186 20 7 3.4764 -0.7564 0.0003 21 8 2.3095 -1.0736 0.0002 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5141 0.8899 24 1 -0.3633 0.5136 -0.8901 25 1 2.0345 2.1271 0.0004 26 1 6.2634 2.1717 1.4424 27 1 4.5388 2.3310 1.8529 28 1 5.3569 0.7614 2.0401 29 1 6.8797 0.6954 -0.1923 30 1 6.7843 1.9373 -3.5281 31 1 6.5159 2.6720 -1.9292 32 1 7.8998 1.5827 -2.1871 33 1 6.3764 0.1069 -5.7618 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308564316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:50 Heat of formation + Delta-G solvation = 54.865436 kcal Electronic energy + Delta-G solvation = -15577.214188 eV Core-core repulsion = 13027.221171 eV Total energy + Delta-G solvation = -2549.993017 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.35655 -36.91712 -33.94582 -33.13989 -31.96055 -30.20559 -27.51550 -26.77647 -25.05286 -23.63479 -22.21812 -20.37869 -18.87115 -17.09476 -16.71510 -16.17978 -14.84924 -14.51800 -14.43471 -13.64781 -13.42418 -13.27166 -13.16451 -12.35974 -12.23865 -12.14546 -11.50509 -11.44680 -11.33446 -10.86309 -10.75709 -10.58376 -10.40035 -10.08741 -9.85536 -9.42976 -8.94955 -8.82397 -8.30661 -7.25668 -5.92564 -3.93821 1.96330 2.83533 3.37904 3.43178 3.48327 3.58363 4.48853 4.72516 4.80145 5.18685 5.33077 5.39726 5.42271 5.50843 5.60717 5.63960 5.69473 5.91232 5.96334 6.17025 6.28110 6.41511 6.56165 6.69198 6.84654 7.10071 7.38539 7.74725 7.94899 8.29948 8.57737 8.64617 8.96830 9.13106 9.70616 11.15364 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026932 B = 0.008294 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.407267 B = 3375.192724 C = 3922.095658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.056 4.056 3 C -0.236 4.236 4 C 0.037 3.963 5 C 0.157 3.843 6 H 0.056 0.944 7 C -0.144 4.144 8 N -0.672 5.672 9 C 0.214 3.786 10 H 0.029 0.971 11 C -0.166 4.166 12 C -0.488 4.488 13 H 0.062 0.938 14 C 0.054 3.946 15 N -0.901 5.901 16 Si 0.897 3.103 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.274 1.274 20 N -0.319 5.319 21 O 0.094 5.906 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.163 0.837 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.331 0.669 30 H 0.085 0.915 31 H 0.004 0.996 32 H 0.032 0.968 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.107 4.154 9.927 14.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 C -0.258 4.258 4 C -0.124 4.124 5 C 0.045 3.955 6 H 0.074 0.926 7 C -0.203 4.203 8 N -0.303 5.303 9 C 0.107 3.893 10 H 0.047 0.953 11 C -0.226 4.226 12 C -0.527 4.527 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.541 5.541 16 Si 0.725 3.275 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.199 1.199 20 N -0.021 5.021 21 O 0.025 5.975 22 H 0.097 0.903 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.180 0.820 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.104 0.896 31 H 0.023 0.977 32 H 0.051 0.949 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.620 2.579 9.726 13.250 hybrid contribution 0.389 0.971 -0.793 1.313 sum -8.231 3.550 8.933 12.655 Atomic orbital electron populations 1.20224 0.84837 1.04130 1.03412 1.24374 0.96128 0.86918 1.04498 1.22298 0.91893 1.00493 1.11102 1.23567 0.96418 0.89997 1.02400 1.19710 0.88051 0.92488 0.95235 0.92620 1.21910 1.01100 1.01528 0.95725 1.60649 1.05683 1.55227 1.08777 1.19185 0.95630 0.93760 0.80750 0.95286 1.22432 0.99146 0.96728 1.04273 1.21136 1.39781 1.00804 0.90950 0.91932 1.24942 0.95962 0.96541 0.97184 1.69900 1.48833 1.31488 1.03864 0.86509 0.79147 0.83484 0.78324 1.20822 1.21460 1.19913 1.73984 0.94714 1.16511 1.16858 1.84913 1.11950 1.33220 1.67410 0.90286 0.89834 0.89711 0.81985 0.92050 0.92509 0.91950 0.85085 0.89600 0.97739 0.94926 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.45 36.01 0.38 -0.26 16 2 C -0.06 -0.82 7.49 -35.30 -0.26 -1.09 16 3 C -0.24 -3.73 11.06 -39.38 -0.44 -4.17 16 4 C 0.04 0.72 5.97 -82.09 -0.49 0.23 16 5 C 0.16 2.96 2.92 -68.86 -0.20 2.76 16 6 H 0.06 1.06 7.22 -51.93 -0.38 0.68 16 7 C -0.14 -2.13 9.19 37.16 0.34 -1.79 16 8 N -0.67 -15.06 5.90 -102.17 -0.60 -15.66 16 9 C 0.21 5.62 2.37 -68.86 -0.16 5.46 16 10 H 0.03 0.86 7.64 -51.93 -0.40 0.46 16 11 C -0.17 -4.08 8.84 37.16 0.33 -3.75 16 12 C -0.49 -14.22 8.84 -34.44 -0.30 -14.52 16 13 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 14 C 0.05 1.56 5.30 -17.82 -0.09 1.46 16 15 N -0.90 -26.70 11.39 55.43 0.63 -26.07 16 16 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 17 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 20 N -0.32 -6.89 11.89 33.42 0.40 -6.49 16 21 O 0.09 1.75 11.20 17.19 0.19 1.94 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 26 H 0.06 0.81 8.07 -51.93 -0.42 0.40 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.33 6.86 8.02 -39.29 -0.32 6.54 16 30 H 0.09 2.33 6.26 -51.93 -0.33 2.00 16 31 H 0.00 0.08 7.51 -51.93 -0.39 -0.31 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 281.41 15.07 4.24 4.24 Total: -1.00 -32.55 281.41 -5.79 -38.34 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.73 Total: 1.84 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.91 Total: -15.66 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.43 Total: -48.22 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.19 Total: 1.94 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.55 -5.79 -38.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308564316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.209 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds