Wall clock time and date at job start Mon Mar 30 2020 20:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35455 * 126.77340 * 2 1 4 4 C 1.41372 * 103.98559 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.80465 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46953 * 324.99583 * 5 4 3 7 7 C 1.52997 * 109.47103 * 84.99778 * 5 4 3 8 8 N 1.46893 * 109.47176 * 205.00124 * 5 4 3 9 9 C 1.46898 * 111.00268 * 154.99780 * 8 5 4 10 10 H 1.09008 * 109.47161 * 34.99845 * 9 8 5 11 11 C 1.52995 * 109.47448 * 274.99933 * 9 8 5 12 12 C 1.50703 * 109.47344 * 154.99329 * 9 8 5 13 13 H 1.07998 * 120.00152 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99955 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00160 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99939 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47363 * 59.99740 * 16 14 12 18 18 H 1.48505 * 109.47120 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46686 * 299.99593 * 16 14 12 20 20 N 1.30175 * 106.39750 * 0.26166 * 4 3 2 21 21 O 1.20923 * 111.59863 * 359.53304 * 20 4 3 22 22 H 1.08989 * 109.47207 * 90.00111 * 1 2 3 23 23 H 1.09000 * 109.46786 * 210.00434 * 1 2 3 24 24 H 1.09004 * 109.46973 * 329.99905 * 1 2 3 25 25 H 1.08005 * 128.00697 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.46777 * 180.02562 * 7 5 4 27 27 H 1.09000 * 109.47140 * 300.00046 * 7 5 4 28 28 H 1.08992 * 109.47280 * 59.99899 * 7 5 4 29 29 H 1.00903 * 110.99825 * 278.94879 * 8 5 4 30 30 H 1.09008 * 109.46867 * 300.00091 * 11 9 8 31 31 H 1.09002 * 109.47349 * 59.99149 * 11 9 8 32 32 H 1.08999 * 109.47716 * 179.97438 * 11 9 8 33 33 H 0.97000 * 120.00215 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 0.0006 5 6 4.9211 1.3002 0.0014 6 1 4.8086 2.2102 -0.5880 7 6 5.2965 1.6666 1.4386 8 7 5.9790 0.4657 -0.5835 9 6 7.0549 1.2948 -1.1428 10 1 7.1868 2.1837 -0.5257 11 6 6.6880 1.7132 -2.5679 12 6 8.3379 0.5045 -1.1658 13 1 8.3525 -0.5122 -0.8017 14 6 9.4928 1.0791 -1.6526 15 7 9.4750 2.3170 -2.0964 16 14 11.0830 0.0992 -1.6817 17 1 10.9029 -1.1118 -2.5221 18 1 12.1706 0.9375 -2.2470 19 1 11.4396 -0.3067 -0.2985 20 7 3.4764 -0.7562 -0.0048 21 8 2.3096 -1.0735 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 2.0344 2.1272 0.0004 26 1 6.2363 2.2187 1.4391 27 1 4.5115 2.2859 1.8726 28 1 5.4088 0.7567 2.0280 29 1 6.3412 -0.1872 0.0953 30 1 6.5561 0.8243 -3.1850 31 1 5.7600 2.2848 -2.5513 32 1 7.4861 2.3288 -2.9828 33 1 10.2875 2.7211 -2.4392 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308564317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:52 Heat of formation + Delta-G solvation = 51.811493 kcal Electronic energy + Delta-G solvation = -15337.005119 eV Core-core repulsion = 12786.879673 eV Total energy + Delta-G solvation = -2550.125446 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.55793 -36.94794 -34.08774 -33.29628 -32.07140 -29.94402 -27.71096 -26.87166 -25.20172 -23.75187 -22.39552 -20.05940 -18.97593 -17.30150 -17.01256 -16.36424 -14.96846 -14.62309 -14.04782 -13.73696 -13.42056 -13.33156 -13.28032 -12.56759 -12.43542 -12.23884 -11.68160 -11.45668 -11.03412 -10.83636 -10.76677 -10.60631 -10.38533 -10.12631 -9.96057 -9.58705 -9.03383 -8.84594 -8.46711 -7.27211 -6.01867 -4.07801 1.76104 2.64498 3.32863 3.36720 3.38352 3.40504 4.40343 4.59669 4.65602 5.11575 5.23036 5.28933 5.30933 5.45053 5.54620 5.63574 5.69600 5.79421 5.89315 6.16427 6.31767 6.34758 6.57645 6.87656 7.14696 7.22601 7.49758 7.79277 7.89308 8.27052 8.39409 8.63667 8.75511 9.02261 9.57955 11.04561 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.053912 B = 0.005827 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.238063 B = 4803.996446 C = 4893.591015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.051 4.051 3 C -0.234 4.234 4 C 0.044 3.956 5 C 0.157 3.843 6 H 0.092 0.908 7 C -0.171 4.171 8 N -0.677 5.677 9 C 0.212 3.788 10 H 0.004 0.996 11 C -0.125 4.125 12 C -0.517 4.517 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.278 1.278 20 N -0.343 5.343 21 O 0.091 5.909 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.165 0.835 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.337 0.663 30 H 0.031 0.969 31 H 0.003 0.997 32 H 0.082 0.918 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.329 -0.431 5.065 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.115 4.115 3 C -0.256 4.256 4 C -0.117 4.117 5 C 0.044 3.956 6 H 0.110 0.890 7 C -0.231 4.231 8 N -0.308 5.308 9 C 0.105 3.895 10 H 0.022 0.978 11 C -0.183 4.183 12 C -0.556 4.556 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 N -0.046 5.046 21 O 0.024 5.976 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.105 0.895 25 H 0.183 0.817 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.155 0.845 30 H 0.050 0.950 31 H 0.022 0.978 32 H 0.100 0.900 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.647 -1.404 4.352 15.344 hybrid contribution 0.972 0.696 0.678 1.375 sum -13.675 -0.708 5.030 14.588 Atomic orbital electron populations 1.20239 0.84649 1.04077 1.03692 1.24398 0.96145 0.86784 1.04198 1.22361 0.91726 1.00658 1.10820 1.23768 0.96962 0.89887 1.01044 1.19854 0.86993 0.94382 0.94322 0.89029 1.22436 1.02033 1.01703 0.96928 1.60670 1.13850 1.18686 1.37595 1.19131 0.86921 0.91412 0.92008 0.97812 1.21742 0.98073 0.99417 0.99112 1.21211 0.92893 0.99539 1.41947 0.92263 1.24903 0.98962 0.94969 0.95091 1.69885 1.28181 1.12808 1.42100 0.86572 0.82625 0.79942 0.78333 1.20189 1.21301 1.20328 1.73881 0.95411 1.16659 1.18676 1.84858 1.11768 1.33176 1.67753 0.89825 0.90233 0.89512 0.81725 0.91145 0.92892 0.92725 0.84500 0.94990 0.97836 0.89989 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 36.01 0.38 -0.14 16 2 C -0.05 -0.66 7.49 -35.30 -0.26 -0.92 16 3 C -0.23 -3.28 11.06 -39.38 -0.44 -3.72 16 4 C 0.04 0.78 6.28 -82.10 -0.52 0.26 16 5 C 0.16 2.97 2.91 -68.87 -0.20 2.77 16 6 H 0.09 1.75 7.11 -51.93 -0.37 1.38 16 7 C -0.17 -2.87 9.13 37.16 0.34 -2.53 16 8 N -0.68 -15.36 5.90 -102.17 -0.60 -15.96 16 9 C 0.21 5.47 2.41 -68.87 -0.17 5.30 16 10 H 0.00 0.12 7.11 -51.92 -0.37 -0.25 16 11 C -0.13 -3.20 9.17 37.15 0.34 -2.86 16 12 C -0.52 -14.48 8.59 -34.44 -0.30 -14.77 16 13 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 16 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 N -0.34 -6.48 11.88 33.42 0.40 -6.08 16 21 O 0.09 1.46 11.20 17.21 0.19 1.65 16 22 H 0.08 0.53 8.14 -51.94 -0.42 0.11 16 23 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.17 1.83 8.06 -52.48 -0.42 1.41 16 26 H 0.07 1.26 7.43 -51.93 -0.39 0.87 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.34 7.71 7.96 -39.29 -0.31 7.40 16 30 H 0.03 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.00 0.06 7.43 -51.93 -0.39 -0.32 16 32 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 279.88 15.07 4.22 4.22 Total: -1.00 -30.67 279.88 -5.74 -36.41 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.63 Total: 3.07 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.92 Total: -14.95 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.42 Total: -47.00 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.19 Total: 1.65 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.67 -5.74 -36.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308564317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.220 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds