Wall clock time and date at job start Mon Mar 30 2020 20:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35455 * 126.77340 * 2 1 4 4 C 1.41372 * 103.98559 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.80465 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46953 * 324.99583 * 5 4 3 7 7 C 1.52997 * 109.47103 * 84.99778 * 5 4 3 8 8 N 1.46893 * 109.47176 * 205.00124 * 5 4 3 9 9 C 1.46898 * 111.00268 * 154.99780 * 8 5 4 10 10 H 1.09008 * 109.47161 * 34.99845 * 9 8 5 11 11 C 1.52995 * 109.47448 * 274.99933 * 9 8 5 12 12 C 1.50703 * 109.47344 * 154.99329 * 9 8 5 13 13 H 1.07998 * 120.00152 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99955 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00160 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99939 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47363 * 59.99740 * 16 14 12 18 18 H 1.48505 * 109.47120 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46686 * 299.99593 * 16 14 12 20 20 N 1.30175 * 106.39750 * 0.26166 * 4 3 2 21 21 O 1.20923 * 111.59863 * 359.53304 * 20 4 3 22 22 H 1.08989 * 109.47207 * 90.00111 * 1 2 3 23 23 H 1.09000 * 109.46786 * 210.00434 * 1 2 3 24 24 H 1.09004 * 109.46973 * 329.99905 * 1 2 3 25 25 H 1.08005 * 128.00697 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.46777 * 180.02562 * 7 5 4 27 27 H 1.09000 * 109.47140 * 300.00046 * 7 5 4 28 28 H 1.08992 * 109.47280 * 59.99899 * 7 5 4 29 29 H 1.00903 * 110.99825 * 278.94879 * 8 5 4 30 30 H 1.09008 * 109.46867 * 300.00091 * 11 9 8 31 31 H 1.09002 * 109.47349 * 59.99149 * 11 9 8 32 32 H 1.08999 * 109.47716 * 179.97438 * 11 9 8 33 33 H 0.97000 * 120.00215 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5374 0.0006 5 6 4.9211 1.3002 0.0014 6 1 4.8086 2.2102 -0.5880 7 6 5.2965 1.6666 1.4386 8 7 5.9790 0.4657 -0.5835 9 6 7.0549 1.2948 -1.1428 10 1 7.1868 2.1837 -0.5257 11 6 6.6880 1.7132 -2.5679 12 6 8.3379 0.5045 -1.1658 13 1 8.3525 -0.5122 -0.8017 14 6 9.4928 1.0791 -1.6526 15 7 9.4750 2.3170 -2.0964 16 14 11.0830 0.0992 -1.6817 17 1 10.9029 -1.1118 -2.5221 18 1 12.1706 0.9375 -2.2470 19 1 11.4396 -0.3067 -0.2985 20 7 3.4764 -0.7562 -0.0048 21 8 2.3096 -1.0735 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 2.0344 2.1272 0.0004 26 1 6.2363 2.2187 1.4391 27 1 4.5115 2.2859 1.8726 28 1 5.4088 0.7567 2.0280 29 1 6.3412 -0.1872 0.0953 30 1 6.5561 0.8243 -3.1850 31 1 5.7600 2.2848 -2.5513 32 1 7.4861 2.3288 -2.9828 33 1 10.2875 2.7211 -2.4392 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308564317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:52 Heat of formation + Delta-G solvation = 31.378597 kcal Electronic energy + Delta-G solvation = -15337.891155 eV Core-core repulsion = 12786.879673 eV Total energy + Delta-G solvation = -2551.011483 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.78789 -38.63565 -35.75226 -34.47029 -33.66058 -31.67443 -28.88900 -28.35135 -27.31694 -25.17905 -23.63756 -21.93902 -20.41254 -18.64840 -18.48876 -17.96235 -16.93037 -16.07897 -15.82518 -15.14899 -14.76139 -14.38173 -14.34214 -13.97237 -13.85360 -13.42004 -13.26242 -13.08959 -12.85646 -12.62218 -12.43128 -12.35964 -12.21995 -11.98909 -11.77558 -10.95578 -10.86990 -10.59240 -10.12678 -9.09717 -8.15645 -6.29213 0.69981 1.39754 1.40841 1.42561 1.50326 2.39641 2.42321 3.12573 3.32019 3.38372 3.93744 4.14063 4.18990 4.29231 4.48288 4.56041 4.76404 4.80016 4.80699 4.83017 4.99836 5.01193 5.07031 5.17574 5.22347 5.34589 5.45143 5.64368 5.81674 6.18258 6.42637 6.70673 6.93345 7.40639 7.55921 8.89968 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.053912 B = 0.005827 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.238063 B = 4803.996446 C = 4893.591015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.036 4.036 3 C -0.242 4.242 4 C 0.021 3.979 5 C 0.156 3.844 6 H 0.088 0.912 7 C -0.160 4.160 8 N -0.682 5.682 9 C 0.219 3.781 10 H -0.017 1.017 11 C -0.113 4.113 12 C -0.540 4.540 13 H 0.052 0.948 14 C 0.017 3.983 15 N -0.915 5.915 16 Si 0.962 3.038 17 H -0.275 1.275 18 H -0.280 1.280 19 H -0.271 1.271 20 N -0.384 5.384 21 O 0.083 5.917 22 H 0.100 0.900 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.194 0.806 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.332 0.668 30 H 0.020 0.980 31 H 0.022 0.978 32 H 0.061 0.939 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.920 -0.413 5.507 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 C -0.263 4.263 4 C -0.138 4.138 5 C 0.044 3.956 6 H 0.106 0.894 7 C -0.220 4.220 8 N -0.313 5.313 9 C 0.111 3.889 10 H 0.001 0.999 11 C -0.172 4.172 12 C -0.579 4.579 13 H 0.071 0.929 14 C -0.182 4.182 15 N -0.554 5.554 16 Si 0.787 3.213 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.196 1.196 20 N -0.089 5.089 21 O 0.017 5.983 22 H 0.118 0.882 23 H 0.113 0.887 24 H 0.131 0.869 25 H 0.211 0.789 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.149 0.851 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.258 -1.383 4.803 17.009 hybrid contribution 1.334 0.698 0.547 1.602 sum -14.924 -0.685 5.351 15.869 Atomic orbital electron populations 1.20542 0.80537 1.06100 1.05306 1.25338 0.98102 0.85274 1.01210 1.22684 0.89983 1.02455 1.11227 1.23756 0.97639 0.90108 1.02278 1.19869 0.86606 0.93888 0.95218 0.89438 1.22301 1.02183 1.01803 0.95709 1.60576 1.13426 1.18903 1.38354 1.18913 0.87426 0.90732 0.91810 0.99936 1.21570 0.98214 0.98656 0.98716 1.21503 0.94355 0.99564 1.42454 0.92937 1.25676 1.02071 0.95939 0.94557 1.69994 1.29067 1.13985 1.42325 0.85563 0.78735 0.78489 0.78528 1.20034 1.20506 1.19617 1.73872 0.97051 1.17479 1.20489 1.84797 1.11388 1.34408 1.67682 0.88177 0.88750 0.86947 0.78859 0.92790 0.89821 0.93042 0.85054 0.96125 0.95907 0.91990 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.45 71.24 0.74 0.02 16 2 C -0.04 -0.81 7.49 25.04 0.19 -0.63 16 3 C -0.24 -6.23 11.06 22.40 0.25 -5.98 16 4 C 0.02 0.74 6.28 43.58 0.27 1.02 16 5 C 0.16 5.91 2.91 44.17 0.13 6.04 16 6 H 0.09 3.34 7.11 -2.39 -0.02 3.33 16 7 C -0.16 -5.33 9.13 71.98 0.66 -4.67 16 8 N -0.68 -31.59 5.90 -477.17 -2.81 -34.41 16 9 C 0.22 11.55 2.41 44.17 0.11 11.66 16 10 H -0.02 -0.95 7.11 -2.38 -0.02 -0.96 16 11 C -0.11 -5.88 9.17 71.98 0.66 -5.22 16 12 C -0.54 -30.81 8.59 25.60 0.22 -30.59 16 13 H 0.05 2.99 7.62 -2.91 -0.02 2.97 16 14 C 0.02 0.97 5.30 84.65 0.45 1.41 16 15 N -0.91 -53.07 11.32 21.45 0.24 -52.83 16 16 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 N -0.38 -14.45 11.88 -49.57 -0.59 -15.04 16 21 O 0.08 2.58 11.20 71.74 0.80 3.39 16 22 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.19 3.65 8.06 -2.91 -0.02 3.62 16 26 H 0.05 1.95 7.43 -2.39 -0.02 1.93 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 29 H 0.33 15.68 7.96 -89.69 -0.71 14.97 16 30 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.02 1.04 7.43 -2.39 -0.02 1.02 16 32 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 33 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -66.92 279.88 3.73 -63.18 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.39 Total: 16.12 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 3.67 Total: -26.94 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -3.16 Total: -102.27 kcal Atomic # 8 Polarization: 2.58 SS G_CDS: 0.80 Total: 3.39 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.92 3.73 -63.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308564317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.563 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds