Wall clock time and date at job start Mon Mar 30 2020 20:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 C 1.53938 * 113.73276 * 276.72663 * 14 12 11 16 16 N 1.47958 * 86.17998 * 221.92018 * 15 14 12 17 17 C 1.47963 * 90.76611 * 24.69274 * 16 15 14 18 18 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 19 19 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 20 20 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 21 21 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 22 22 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 23 23 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 24 24 H 1.09000 * 112.94142 * 48.43515 * 14 12 11 25 25 H 1.08993 * 113.76231 * 336.23794 * 15 14 12 26 26 H 1.09009 * 113.75637 * 107.60716 * 15 14 12 27 27 H 1.00899 * 111.00314 * 271.79666 * 16 15 14 28 28 H 1.08998 * 113.76158 * 220.99218 * 17 16 15 29 29 H 1.08995 * 113.85884 * 89.63074 * 17 16 15 30 30 H 1.09003 * 117.49648 * 359.97438 * 18 9 7 31 31 H 1.08991 * 117.50066 * 145.01997 * 18 9 7 32 32 H 1.08996 * 117.49909 * 214.98045 * 19 9 7 33 33 H 1.09006 * 117.50020 * 359.97109 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 6 3.9975 -5.4284 3.8817 16 7 4.2573 -5.5779 5.3306 17 6 3.1527 -4.6451 5.6452 18 6 1.5730 -3.5796 -0.9302 19 6 0.2452 -2.8210 -1.0000 20 1 -0.4850 0.8369 -0.0732 21 1 0.3751 -2.1632 2.0411 22 1 0.3015 -3.8512 1.4812 23 1 3.0164 -3.0733 1.8316 24 1 4.0921 -3.2388 4.2140 25 1 3.2782 -6.1465 3.4881 26 1 4.9026 -5.3568 3.2784 27 1 5.1497 -5.1792 5.5811 28 1 3.3826 -3.9479 6.4508 29 1 2.1855 -5.1325 5.7678 30 1 2.3246 -3.3491 -1.6853 31 1 1.5428 -4.6172 -0.5978 32 1 -0.6578 -3.3599 -0.7135 33 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404076850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:28 Heat of formation + Delta-G solvation = 16.653754 kcal Electronic energy + Delta-G solvation = -15408.566888 eV Core-core repulsion = 12856.916889 eV Total energy + Delta-G solvation = -2551.650000 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.20045 -37.92847 -36.55302 -33.31782 -32.00238 -28.43298 -26.15860 -25.91950 -24.98519 -21.42467 -21.01421 -19.66396 -19.14435 -17.10957 -16.59499 -16.04902 -15.11887 -14.81133 -14.55064 -13.98859 -13.57246 -13.24706 -12.72860 -12.63743 -12.55336 -11.80861 -11.64776 -11.53981 -11.03816 -10.99361 -10.90264 -10.57070 -10.27011 -9.68052 -9.45176 -9.08648 -8.62629 -8.53583 -8.25874 -8.12774 -6.11669 -4.21913 3.06486 3.21697 3.30076 3.30823 3.82410 3.91438 4.30889 4.44935 4.80399 5.15794 5.24464 5.28928 5.41464 5.54738 5.59738 5.72497 5.84724 6.00332 6.14970 6.30468 6.44086 6.52702 6.67174 6.83839 7.08915 7.16334 7.24118 7.35822 7.49930 7.76591 8.24711 8.29573 8.78645 8.82893 9.45427 10.95484 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030139 B = 0.007401 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.798807 B = 3782.220644 C = 4175.347395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.162 3.838 11 N -0.700 5.700 12 C 0.511 3.489 13 O -0.556 6.556 14 C -0.187 4.187 15 C 0.037 3.963 16 N -0.661 5.661 17 C 0.042 3.958 18 C -0.211 4.211 19 C -0.142 4.142 20 H 0.262 0.738 21 H 0.067 0.933 22 H 0.040 0.960 23 H 0.401 0.599 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.335 0.665 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.700 -6.193 5.023 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.022 3.978 10 C 0.039 3.961 11 N -0.348 5.348 12 C 0.295 3.705 13 O -0.435 6.435 14 C -0.210 4.210 15 C -0.093 4.093 16 N -0.287 5.287 17 C -0.088 4.088 18 C -0.248 4.248 19 C -0.181 4.181 20 H 0.072 0.928 21 H 0.085 0.915 22 H 0.058 0.942 23 H 0.234 0.766 24 H 0.129 0.871 25 H 0.119 0.881 26 H 0.098 0.902 27 H 0.150 0.850 28 H 0.093 0.907 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.496 -6.996 5.678 11.107 hybrid contribution 1.081 2.211 -0.685 2.555 sum 7.576 -4.785 4.992 10.258 Atomic orbital electron populations 1.69989 1.05897 1.26925 1.48213 1.24996 0.94828 0.98992 0.94294 0.86621 0.79888 0.83536 0.78144 1.20636 1.21145 1.19836 1.20348 0.92607 0.88603 1.52332 0.92225 1.19047 0.99435 0.93327 0.85949 1.21006 0.84204 0.97889 0.93010 1.46031 1.11243 1.62282 1.15275 1.20304 0.90373 0.77704 0.82118 1.90650 1.30751 1.54048 1.68070 1.24571 0.97664 1.00310 0.98412 1.23536 1.00571 0.93701 0.91477 1.65097 1.05955 1.48834 1.08821 1.23562 0.97584 0.93667 0.93985 1.23015 1.00728 0.95568 1.05478 1.22469 0.90800 1.01318 1.03472 0.92820 0.91499 0.94196 0.76554 0.87082 0.88122 0.90169 0.85049 0.90669 0.87053 0.90389 0.91718 0.91809 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.12 12.65 55.43 0.70 -23.42 16 2 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 3 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.50 -12.74 8.59 -34.44 -0.30 -13.04 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.02 0.54 1.47 -155.66 -0.23 0.31 16 10 C 0.16 3.64 5.50 -4.04 -0.02 3.62 16 11 N -0.70 -13.24 5.48 -60.29 -0.33 -13.57 16 12 C 0.51 9.23 7.36 -10.98 -0.08 9.15 16 13 O -0.56 -12.13 15.89 5.55 0.09 -12.04 16 14 C -0.19 -2.45 4.31 -90.83 -0.39 -2.84 16 15 C 0.04 0.43 8.46 -2.77 -0.02 0.41 16 16 N -0.66 -7.45 8.55 -117.07 -1.00 -8.45 16 17 C 0.04 0.53 8.25 -2.76 -0.02 0.50 16 18 C -0.21 -4.34 9.96 -26.69 -0.27 -4.61 16 19 C -0.14 -3.25 9.14 -26.70 -0.24 -3.50 16 20 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 21 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 22 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 23 H 0.40 6.91 8.33 -40.82 -0.34 6.57 16 24 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.10 1.27 8.09 -51.93 -0.42 0.85 16 26 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.34 3.00 8.89 -39.29 -0.35 2.65 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.11 1.63 7.41 -51.93 -0.38 1.24 16 30 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 284.00 15.07 4.28 4.28 Total: -1.00 -29.23 284.00 -7.80 -37.03 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.84 Total: 9.04 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.67 Total: -8.17 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.63 Total: -45.44 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.23 -7.80 -37.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404076850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.687 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds