Wall clock time and date at job start Mon Mar 30 2020 20:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 C 1.53938 * 113.73276 * 276.72663 * 14 12 11 16 16 N 1.47958 * 86.17998 * 221.92018 * 15 14 12 17 17 C 1.47963 * 90.76611 * 24.69274 * 16 15 14 18 18 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 19 19 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 20 20 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 21 21 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 22 22 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 23 23 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 24 24 H 1.09000 * 112.94142 * 48.43515 * 14 12 11 25 25 H 1.08993 * 113.76231 * 336.23794 * 15 14 12 26 26 H 1.09009 * 113.75637 * 107.60716 * 15 14 12 27 27 H 1.00899 * 111.00314 * 271.79666 * 16 15 14 28 28 H 1.08998 * 113.76158 * 220.99218 * 17 16 15 29 29 H 1.08995 * 113.85884 * 89.63074 * 17 16 15 30 30 H 1.09003 * 117.49648 * 359.97438 * 18 9 7 31 31 H 1.08991 * 117.50066 * 145.01997 * 18 9 7 32 32 H 1.08996 * 117.49909 * 214.98045 * 19 9 7 33 33 H 1.09006 * 117.50020 * 359.97109 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 6 3.9975 -5.4284 3.8817 16 7 4.2573 -5.5779 5.3306 17 6 3.1527 -4.6451 5.6452 18 6 1.5730 -3.5796 -0.9302 19 6 0.2452 -2.8210 -1.0000 20 1 -0.4850 0.8369 -0.0732 21 1 0.3751 -2.1632 2.0411 22 1 0.3015 -3.8512 1.4812 23 1 3.0164 -3.0733 1.8316 24 1 4.0921 -3.2388 4.2140 25 1 3.2782 -6.1465 3.4881 26 1 4.9026 -5.3568 3.2784 27 1 5.1497 -5.1792 5.5811 28 1 3.3826 -3.9479 6.4508 29 1 2.1855 -5.1325 5.7678 30 1 2.3246 -3.3491 -1.6853 31 1 1.5428 -4.6172 -0.5978 32 1 -0.6578 -3.3599 -0.7135 33 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404076850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:43:28 Heat of formation + Delta-G solvation = -5.511620 kcal Electronic energy + Delta-G solvation = -15409.528051 eV Core-core repulsion = 12856.916889 eV Total energy + Delta-G solvation = -2552.611162 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.41973 -39.32549 -38.24089 -34.95915 -33.96890 -29.71996 -27.82512 -27.01652 -26.63899 -23.01735 -22.40377 -21.35589 -20.60152 -18.56436 -17.91868 -17.43169 -16.76680 -16.60450 -16.10888 -15.62963 -15.00139 -14.48071 -14.40412 -13.92675 -13.59739 -13.49136 -13.31177 -12.95632 -12.82645 -12.74055 -12.37814 -12.04292 -11.85760 -11.41720 -10.98287 -10.94124 -10.45558 -10.10475 -9.85871 -9.51705 -8.10769 -6.25548 1.41438 1.44158 1.52065 1.65683 2.36435 2.42936 2.98346 3.17297 3.40162 3.48689 3.80616 4.16398 4.25549 4.35368 4.52968 4.62461 4.66548 4.67214 4.71871 4.76783 4.92132 4.98531 5.02727 5.14489 5.27176 5.54239 5.59027 5.69227 5.76871 6.34923 6.41648 6.75609 6.83625 7.36618 7.44766 8.96320 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030139 B = 0.007401 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.798807 B = 3782.220644 C = 4175.347395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.002 3.998 10 C 0.178 3.822 11 N -0.696 5.696 12 C 0.507 3.493 13 O -0.599 6.599 14 C -0.179 4.179 15 C 0.044 3.956 16 N -0.661 5.661 17 C 0.040 3.960 18 C -0.175 4.175 19 C -0.157 4.157 20 H 0.259 0.741 21 H 0.024 0.976 22 H 0.035 0.965 23 H 0.411 0.589 24 H 0.139 0.861 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.353 0.647 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.346 -6.651 5.249 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.185 1.185 7 C -0.542 4.542 8 H 0.084 0.916 9 C 0.002 3.998 10 C 0.053 3.947 11 N -0.345 5.345 12 C 0.294 3.706 13 O -0.481 6.481 14 C -0.201 4.201 15 C -0.086 4.086 16 N -0.289 5.289 17 C -0.090 4.090 18 C -0.212 4.212 19 C -0.195 4.195 20 H 0.068 0.932 21 H 0.042 0.958 22 H 0.054 0.946 23 H 0.247 0.753 24 H 0.156 0.844 25 H 0.103 0.897 26 H 0.129 0.871 27 H 0.169 0.831 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.200 -7.465 5.902 13.236 hybrid contribution 0.247 2.301 -0.740 2.430 sum 9.447 -5.163 5.161 11.939 Atomic orbital electron populations 1.70122 1.07364 1.27341 1.49899 1.25738 0.95475 1.02213 0.94387 0.85670 0.78940 0.79619 0.78131 1.20247 1.21943 1.18550 1.20690 0.93050 0.89465 1.51037 0.91559 1.19084 1.00173 0.94052 0.86537 1.20548 0.85412 0.96093 0.92598 1.45928 1.10413 1.62446 1.15673 1.21246 0.91699 0.76132 0.81542 1.90632 1.33030 1.55562 1.68847 1.24749 0.95359 1.02133 0.97874 1.23546 1.01262 0.91739 0.92032 1.65024 1.06491 1.48727 1.08649 1.23495 0.97069 0.94043 0.94374 1.22998 0.98779 0.95892 1.03562 1.22392 0.92170 1.01903 1.03026 0.93221 0.95785 0.94647 0.75293 0.84352 0.89690 0.87098 0.83067 0.88681 0.89725 0.89525 0.89373 0.91440 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.26 12.65 21.45 0.27 -50.99 16 2 C 0.02 1.18 5.43 84.65 0.46 1.64 16 3 Si 0.95 41.50 29.54 68.60 2.03 43.52 16 4 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.50 -25.30 8.59 25.60 0.22 -25.08 16 8 H 0.07 3.16 7.82 -2.91 -0.02 3.14 16 9 C 0.00 0.10 1.47 -52.93 -0.08 0.03 16 10 C 0.18 8.08 5.50 86.38 0.48 8.56 16 11 N -0.70 -25.66 5.48 -463.05 -2.54 -28.20 16 12 C 0.51 17.93 7.36 87.66 0.65 18.58 16 13 O -0.60 -26.53 15.89 -3.04 -0.05 -26.58 16 14 C -0.18 -4.24 4.31 -10.89 -0.05 -4.28 16 15 C 0.04 0.88 8.46 86.41 0.73 1.61 16 16 N -0.66 -12.93 8.55 -524.31 -4.49 -17.42 16 17 C 0.04 0.93 8.25 86.41 0.71 1.65 16 18 C -0.18 -6.88 9.96 30.62 0.30 -6.58 16 19 C -0.16 -7.17 9.14 30.62 0.28 -6.89 16 20 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 21 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.04 1.61 8.09 -2.38 -0.02 1.59 16 23 H 0.41 13.32 8.33 -92.71 -0.77 12.54 16 24 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.08 1.98 8.09 -2.39 -0.02 1.97 16 26 H 0.11 1.55 8.14 -2.38 -0.02 1.54 16 27 H 0.35 4.93 8.89 -89.69 -0.80 4.13 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 2.45 7.41 -2.39 -0.02 2.43 16 30 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.06 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -63.77 284.00 -1.52 -65.30 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.45 Total: 25.13 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 3.70 Total: -10.77 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -6.75 Total: -96.61 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.05 Total: -26.58 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -63.77 -1.52 -65.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404076850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.787 kcal (2) G-P(sol) polarization free energy of solvation -63.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds