Wall clock time and date at job start Mon Mar 30 2020 20:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.86947 * 2 1 4 4 C 1.52995 * 109.47496 * 59.55025 * 3 2 1 5 5 C 1.53777 * 113.61629 * 274.13793 * 4 3 2 6 6 C 1.53948 * 87.02353 * 220.04593 * 5 4 3 7 7 C 1.53773 * 113.61707 * 176.52851 * 4 3 2 8 8 C 1.54100 * 109.88060 * 238.83589 * 2 1 3 9 9 C 1.54812 * 104.18485 * 242.60935 * 8 2 1 10 10 C 1.54987 * 102.09445 * 20.87942 * 9 8 2 11 11 H 1.09001 * 110.75672 * 81.54552 * 10 9 8 12 12 C 1.50706 * 110.61996 * 204.47600 * 10 9 8 13 13 H 1.08005 * 119.99758 * 355.52496 * 12 10 9 14 14 C 1.37871 * 120.00102 * 175.52381 * 12 10 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 O 1.43746 * 109.87869 * 121.00260 * 2 1 3 21 21 H 1.08998 * 109.47318 * 299.70106 * 1 2 3 22 22 H 1.09007 * 109.46749 * 59.69580 * 1 2 3 23 23 H 1.08994 * 109.47372 * 179.69267 * 1 2 3 24 24 H 1.09001 * 109.46497 * 179.55161 * 3 2 1 25 25 H 1.09003 * 109.46702 * 299.54570 * 3 2 1 26 26 H 1.09004 * 112.84685 * 45.33460 * 4 3 2 27 27 H 1.09006 * 113.61463 * 334.56958 * 5 4 3 28 28 H 1.08998 * 113.61784 * 105.46348 * 5 4 3 29 29 H 1.09002 * 113.53768 * 270.81367 * 6 5 4 30 30 H 1.08995 * 113.67026 * 139.92738 * 6 5 4 31 31 H 1.08999 * 113.61808 * 254.53132 * 7 4 3 32 32 H 1.09004 * 113.61448 * 25.43096 * 7 4 3 33 33 H 1.08998 * 110.48356 * 1.28262 * 8 2 1 34 34 H 1.08991 * 110.48846 * 123.79812 * 8 2 1 35 35 H 1.09000 * 110.90476 * 262.67792 * 9 8 2 36 36 H 1.09002 * 110.90856 * 139.07841 * 9 8 2 37 37 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4390 0.0000 4 6 1.5359 2.1671 1.2435 5 6 0.1408 2.7878 1.0612 6 6 0.6636 3.9982 1.8559 7 6 2.0722 3.6015 1.3832 8 6 2.0541 -0.7499 -1.2400 9 6 2.8324 -1.9534 -0.6547 10 6 2.2280 -2.0703 0.7676 11 1 1.2816 -2.6105 0.7420 12 6 3.1977 -2.7463 1.7024 13 1 4.1311 -3.1356 1.3232 14 6 2.8934 -2.8677 3.0417 15 7 1.7567 -2.3940 3.5033 16 14 4.0952 -3.7062 4.2002 17 1 3.5371 -3.7074 5.5763 18 1 4.3180 -5.1052 3.7547 19 1 5.3860 -2.9721 4.1907 20 8 2.0188 -0.6963 1.1587 21 1 -0.3634 0.5092 0.8926 22 1 -0.3633 0.5186 -0.8873 23 1 -0.3634 -1.0276 -0.0055 24 1 3.1400 1.4313 0.0080 25 1 1.6969 1.9528 -0.8941 26 1 1.6345 1.5737 2.1525 27 1 -0.1023 3.0184 0.0239 28 1 -0.6512 2.2389 1.5706 29 1 0.5224 3.9058 2.9328 30 1 0.3258 4.9577 1.4644 31 1 2.8372 3.7088 2.1522 32 1 2.3582 4.0552 0.4342 33 1 1.2238 -1.0956 -1.8558 34 1 2.7179 -0.1096 -1.8208 35 1 3.9003 -1.7400 -0.6073 36 1 2.6432 -2.8576 -1.2333 37 1 1.1326 -1.9589 2.9016 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306253233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:38 Heat of formation + Delta-G solvation = -52.208587 kcal Electronic energy + Delta-G solvation = -16402.371106 eV Core-core repulsion = 13951.275354 eV Total energy + Delta-G solvation = -2451.095751 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.39263 -37.81412 -33.26659 -31.42872 -30.82826 -27.84183 -26.38421 -25.14784 -23.74925 -22.14205 -20.51170 -19.06250 -18.89193 -16.99931 -15.55142 -15.17834 -14.58794 -14.15487 -13.73671 -13.66998 -13.20514 -12.76619 -12.54104 -12.26253 -11.79515 -11.58540 -11.48221 -11.03438 -10.89290 -10.79927 -10.73791 -10.55312 -10.31513 -10.12884 -10.02826 -9.83304 -9.67616 -9.34714 -8.67893 -8.47187 -8.06263 -6.31142 -4.08536 3.46133 3.49061 3.67202 4.56313 4.86682 4.91056 4.95081 5.07569 5.15070 5.45113 5.50716 5.52968 5.75249 5.81843 5.87606 5.92525 5.96021 5.99268 6.08102 6.10859 6.16073 6.21810 6.25498 6.42212 6.48727 6.55744 6.62314 6.63274 6.78002 6.81192 6.95905 7.00174 7.35937 8.12456 8.38411 8.58695 8.93497 9.73341 11.10491 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.027857 B = 0.008842 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.900576 B = 3166.037403 C = 3711.213478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.095 3.905 3 C -0.093 4.093 4 C -0.099 4.099 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.141 4.141 8 C -0.147 4.147 9 C -0.139 4.139 10 C 0.192 3.808 11 H 0.016 0.984 12 C -0.605 4.605 13 H 0.055 0.945 14 C 0.031 3.969 15 N -0.892 5.892 16 Si 1.068 2.932 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.288 1.288 20 O -0.358 6.358 21 H 0.065 0.935 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 8.851 -6.731 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.054 3.946 3 C -0.131 4.131 4 C -0.117 4.117 5 C -0.174 4.174 6 C -0.181 4.181 7 C -0.178 4.178 8 C -0.185 4.185 9 C -0.177 4.177 10 C 0.137 3.863 11 H 0.033 0.967 12 C -0.643 4.643 13 H 0.073 0.927 14 C -0.177 4.177 15 N -0.526 5.526 16 Si 0.896 3.104 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.214 1.214 20 O -0.278 6.278 21 H 0.084 0.916 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.565 8.507 -4.953 9.968 hybrid contribution -0.265 0.371 -1.972 2.024 sum -1.830 8.878 -6.925 11.407 Atomic orbital electron populations 1.22348 0.96634 1.01452 1.01327 1.21862 0.92603 0.92404 0.87697 1.21635 1.00608 0.94188 0.96661 1.22466 0.94922 0.94329 1.00017 1.23090 0.97631 0.96867 0.99806 1.22836 0.97195 0.97855 1.00193 1.22949 0.96573 0.97427 1.00881 1.22997 0.99605 0.98152 0.97767 1.23059 0.99980 0.95933 0.98726 1.20784 0.94559 0.80522 0.90421 0.96696 1.21877 1.06347 1.40476 0.95574 0.92702 1.25829 0.99036 0.95663 0.97151 1.70659 1.08393 1.34026 1.39554 0.83582 0.74959 0.75821 0.76047 1.20742 1.21428 1.21400 1.89215 1.84776 1.23281 1.30504 0.91621 0.93351 0.93166 0.91808 0.92338 0.88025 0.90742 0.91573 0.90441 0.92197 0.91856 0.90772 0.92176 0.92105 0.91737 0.92520 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 7.77 37.16 0.29 -2.57 16 2 C 0.10 1.87 0.85 -90.04 -0.08 1.79 16 3 C -0.09 -1.60 4.19 -26.73 -0.11 -1.71 16 4 C -0.10 -1.64 3.11 -89.82 -0.28 -1.92 16 5 C -0.14 -1.92 5.94 -25.83 -0.15 -2.07 16 6 C -0.14 -1.84 8.09 -25.83 -0.21 -2.05 16 7 C -0.14 -1.96 7.64 -25.92 -0.20 -2.15 16 8 C -0.15 -2.72 6.28 -25.20 -0.16 -2.87 16 9 C -0.14 -3.01 6.55 -24.73 -0.16 -3.18 16 10 C 0.19 5.04 2.65 -26.83 -0.07 4.97 16 11 H 0.02 0.43 8.07 -51.93 -0.42 0.01 16 12 C -0.61 -17.58 8.83 -34.44 -0.30 -17.88 16 13 H 0.05 1.56 7.78 -52.48 -0.41 1.16 16 14 C 0.03 0.92 5.42 -17.82 -0.10 0.82 16 15 N -0.89 -27.61 13.56 55.43 0.75 -26.86 16 16 Si 1.07 25.60 29.90 -169.99 -5.08 20.52 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 O -0.36 -9.09 8.75 -35.23 -0.31 -9.40 16 21 H 0.06 1.18 5.31 -51.93 -0.28 0.90 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 26 H 0.10 2.06 7.60 -51.93 -0.39 1.66 16 27 H 0.07 0.96 7.92 -51.93 -0.41 0.54 16 28 H 0.07 0.96 7.03 -51.93 -0.36 0.60 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.06 1.01 7.70 -51.93 -0.40 0.61 16 34 H 0.06 1.00 7.70 -51.93 -0.40 0.60 16 35 H 0.06 1.42 8.05 -51.93 -0.42 1.00 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.28 8.74 6.60 -40.82 -0.27 8.47 16 LS Contribution 287.58 15.07 4.33 4.33 Total: -1.00 -30.71 287.58 -8.18 -38.89 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.34 Total: 1.34 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: -1.53 Total: -28.82 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.75 Total: -26.86 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.31 Total: -9.40 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.71 -8.18 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306253233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.319 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds