Wall clock time and date at job start Mon Mar 30 2020 20:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 108.91272 * 2 1 4 4 C 1.54253 * 108.99700 * 241.19560 * 2 1 3 5 5 N 1.44249 * 108.64670 * 160.76737 * 4 2 1 6 6 C 1.48199 * 114.27083 * 93.39168 * 5 4 2 7 7 C 1.53931 * 112.77919 * 318.13642 * 6 5 4 8 8 H 1.09001 * 108.86580 * 79.16644 * 7 6 5 9 9 C 1.50694 * 108.86744 * 197.58725 * 7 6 5 10 10 H 1.08003 * 119.99805 * 114.49132 * 9 7 6 11 11 C 1.37876 * 120.00524 * 294.49226 * 9 7 6 12 12 N 1.31511 * 119.99601 * 359.97438 * 11 9 7 13 13 Si 1.86792 * 120.00428 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47369 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47262 * 119.99732 * 13 11 9 16 16 H 1.48494 * 109.47359 * 239.99821 * 13 11 9 17 17 N 1.44257 * 112.54619 * 318.38172 * 7 6 5 18 18 C 1.46902 * 110.99773 * 217.13130 * 17 7 6 19 19 C 1.53003 * 117.49657 * 154.81342 * 18 17 7 20 20 C 1.52999 * 117.49937 * 86.19128 * 18 17 7 21 21 C 1.46137 * 108.99744 * 118.80386 * 2 1 3 22 22 H 1.09003 * 109.47143 * 178.80721 * 1 2 3 23 23 H 1.09003 * 109.46740 * 298.80493 * 1 2 3 24 24 H 1.08994 * 109.47042 * 58.80457 * 1 2 3 25 25 H 1.08999 * 109.60941 * 41.02074 * 4 2 1 26 26 H 1.08997 * 109.74829 * 280.60320 * 4 2 1 27 27 H 1.00900 * 111.00511 * 219.85007 * 5 4 2 28 28 H 1.09008 * 108.82050 * 197.28392 * 6 5 4 29 29 H 1.09001 * 108.81960 * 78.99021 * 6 5 4 30 30 H 0.97001 * 120.00286 * 180.02562 * 12 11 9 31 31 H 1.08994 * 115.55050 * 300.51935 * 18 17 7 32 32 H 1.09003 * 117.49773 * 359.97438 * 19 18 17 33 33 H 1.08997 * 117.49864 * 145.02333 * 19 18 17 34 34 H 1.08997 * 117.50036 * 214.97881 * 20 18 17 35 35 H 1.09007 * 117.49568 * 359.97438 * 20 18 17 36 36 H 1.09007 * 108.93898 * 302.18678 * 21 2 1 37 37 H 1.08996 * 108.93867 * 60.78822 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8833 1.0312 0.0000 4 6 2.0321 -0.7027 -1.2781 5 7 3.4024 -0.3159 -1.5090 6 6 4.4030 -1.2444 -0.9319 7 6 4.0215 -1.7306 0.4779 8 1 3.2766 -2.5214 0.3885 9 6 5.2482 -2.2937 1.1478 10 1 5.6600 -1.8057 2.0189 11 6 5.8451 -3.4321 0.6488 12 7 5.3434 -4.0266 -0.4115 13 14 7.3661 -4.1297 1.4788 14 1 7.7281 -3.2815 2.6427 15 1 7.0871 -5.5129 1.9416 16 1 8.4928 -4.1492 0.5117 17 7 3.4839 -0.6745 1.3006 18 6 3.9259 -0.8161 2.6943 19 6 3.9702 0.4491 3.5535 20 6 5.2721 -0.1967 3.0750 21 6 2.0057 -0.6658 1.2108 22 1 -0.3633 -1.0275 -0.0214 23 1 -0.3633 0.4952 0.9005 24 1 -0.3633 0.5323 -0.8790 25 1 1.4187 -0.4004 -2.1268 26 1 1.9735 -1.7837 -1.1512 27 1 3.5746 -0.1639 -2.4915 28 1 5.3658 -0.7358 -0.8799 29 1 4.4997 -2.1094 -1.5880 30 1 5.7630 -4.8277 -0.7624 31 1 3.6442 -1.7480 3.1844 32 1 3.6718 1.3867 3.0844 33 1 3.7175 0.3498 4.6091 34 1 5.8759 -0.7208 3.8158 35 1 5.8300 0.3157 2.2911 36 1 1.6015 -0.1484 2.0810 37 1 1.6451 -1.6943 1.2139 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219417708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:45:00 Heat of formation + Delta-G solvation = 43.889866 kcal Electronic energy + Delta-G solvation = -16698.922838 eV Core-core repulsion = 14284.286979 eV Total energy + Delta-G solvation = -2414.635859 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.78932 -36.18311 -33.80259 -32.75121 -31.62388 -27.67764 -25.46664 -24.59090 -23.30787 -21.64942 -20.31991 -19.25381 -18.83754 -16.47761 -15.40868 -15.08073 -14.97329 -14.33342 -13.76899 -13.57917 -13.35290 -12.75039 -12.23457 -12.00649 -11.87004 -11.56700 -11.11016 -11.08048 -10.85154 -10.74348 -10.55942 -10.35803 -10.08633 -9.84942 -9.81301 -9.46033 -9.12151 -8.51846 -8.41213 -7.29146 -7.04315 -6.05569 -4.07624 3.26880 3.35553 3.39175 4.39959 4.68094 4.75653 5.11222 5.31521 5.52474 5.59725 5.73180 5.79522 5.89171 5.97466 6.04958 6.18972 6.23577 6.27270 6.36991 6.40313 6.50352 6.61316 6.73581 6.78601 6.89056 6.92648 6.99025 7.10130 7.32611 7.80205 7.83156 7.97436 8.19062 8.37834 8.50879 8.68771 9.08485 9.59294 11.03378 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.011384 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.606373 B = 2459.057382 C = 3174.833649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.078 0.922 4 C 0.082 3.918 5 N -0.705 5.705 6 C 0.091 3.909 7 C 0.217 3.783 8 H 0.005 0.995 9 C -0.529 4.529 10 H 0.090 0.910 11 C 0.060 3.940 12 N -0.894 5.894 13 Si 0.891 3.109 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.285 1.285 17 N -0.493 5.493 18 C 0.056 3.944 19 C -0.196 4.196 20 C -0.150 4.150 21 C 0.068 3.932 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.032 0.968 27 H 0.322 0.678 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.259 0.741 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 6.053 1.791 8.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.096 0.904 4 C -0.049 4.049 5 N -0.335 5.335 6 C -0.037 4.037 7 C 0.109 3.891 8 H 0.022 0.978 9 C -0.568 4.568 10 H 0.107 0.893 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.196 1.196 15 H -0.213 1.213 16 H -0.211 1.211 17 N -0.217 5.217 18 C -0.053 4.053 19 C -0.234 4.234 20 C -0.188 4.188 21 C -0.059 4.059 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.139 0.861 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.446 6.699 2.038 8.871 hybrid contribution 0.533 -2.131 -0.083 2.198 sum -4.913 4.568 1.955 6.988 Atomic orbital electron populations 1.21843 0.96254 1.01158 1.00996 1.20133 0.93154 1.01467 0.95435 0.90384 1.21457 0.89922 0.97447 0.96063 1.58927 1.02716 1.53536 1.18308 1.22434 0.92477 0.92134 0.96638 1.18970 0.94943 0.86113 0.89079 0.97784 1.22065 1.11422 1.09445 1.13870 0.89254 1.25035 0.97352 0.96801 0.94959 1.69967 1.40426 1.19980 1.22967 0.86534 0.83123 0.78787 0.79601 1.19584 1.21268 1.21080 1.61361 1.05708 1.49118 1.05488 1.21783 1.00317 0.93415 0.89819 1.23184 1.03709 0.98207 0.98267 1.22775 0.90724 1.03155 1.02107 1.20930 0.89725 0.98177 0.97100 0.93262 0.93111 0.93043 0.93394 0.94943 0.86124 0.92808 0.93836 0.93157 0.90864 0.89320 0.90290 0.89978 0.88536 0.92885 0.96084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.00 37.16 0.33 -1.65 16 2 C -0.08 -1.42 2.59 -93.22 -0.24 -1.66 16 3 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 4 C 0.08 1.51 5.51 -4.59 -0.03 1.49 16 5 N -0.70 -14.24 6.32 -113.45 -0.72 -14.96 16 6 C 0.09 2.20 5.76 -2.62 -0.02 2.19 16 7 C 0.22 5.43 1.63 -69.79 -0.11 5.32 16 8 H 0.00 0.13 6.53 -51.93 -0.34 -0.21 16 9 C -0.53 -14.09 7.39 -34.44 -0.25 -14.34 16 10 H 0.09 2.30 3.77 -52.48 -0.20 2.10 16 11 C 0.06 1.64 5.32 -17.82 -0.09 1.55 16 12 N -0.89 -25.39 11.91 55.43 0.66 -24.73 16 13 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 N -0.49 -10.83 4.51 -224.56 -1.01 -11.84 16 18 C 0.06 1.15 3.32 -67.71 -0.22 0.93 16 19 C -0.20 -3.36 10.39 -26.73 -0.28 -3.64 16 20 C -0.15 -2.89 7.80 -26.73 -0.21 -3.10 16 21 C 0.07 1.32 4.20 -6.42 -0.03 1.30 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.05 0.76 8.00 -51.93 -0.42 0.34 16 26 H 0.03 0.68 6.98 -51.93 -0.36 0.32 16 27 H 0.32 5.80 8.89 -39.29 -0.35 5.45 16 28 H 0.05 1.37 7.97 -51.92 -0.41 0.96 16 29 H 0.04 1.15 6.97 -51.93 -0.36 0.78 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.07 1.59 8.11 -51.93 -0.42 1.17 16 32 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 36 H 0.05 0.94 7.78 -51.93 -0.40 0.54 16 37 H 0.02 0.44 7.38 -51.93 -0.38 0.05 16 LS Contribution 282.29 15.07 4.25 4.25 Total: -1.00 -27.94 282.29 -9.15 -37.09 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.16 Total: 5.69 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -1.15 Total: -11.63 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -1.07 Total: -51.54 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.94 -9.15 -37.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219417708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.976 kcal (2) G-P(sol) polarization free energy of solvation -27.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds