Wall clock time and date at job start Mon Mar 30 2020 20:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 108.91272 * 2 1 4 4 C 1.54253 * 108.99700 * 241.19560 * 2 1 3 5 5 N 1.44249 * 108.64670 * 160.76737 * 4 2 1 6 6 C 1.48199 * 114.27083 * 93.39168 * 5 4 2 7 7 C 1.53931 * 112.77919 * 318.13642 * 6 5 4 8 8 H 1.09001 * 108.86580 * 79.16644 * 7 6 5 9 9 C 1.50694 * 108.86744 * 197.58725 * 7 6 5 10 10 H 1.08003 * 119.99805 * 114.49132 * 9 7 6 11 11 C 1.37876 * 120.00524 * 294.49226 * 9 7 6 12 12 N 1.31511 * 119.99601 * 359.97438 * 11 9 7 13 13 Si 1.86792 * 120.00428 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47369 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47262 * 119.99732 * 13 11 9 16 16 H 1.48494 * 109.47359 * 239.99821 * 13 11 9 17 17 N 1.44257 * 112.54619 * 318.38172 * 7 6 5 18 18 C 1.46902 * 110.99773 * 217.13130 * 17 7 6 19 19 C 1.53003 * 117.49657 * 154.81342 * 18 17 7 20 20 C 1.52999 * 117.49937 * 86.19128 * 18 17 7 21 21 C 1.46137 * 108.99744 * 118.80386 * 2 1 3 22 22 H 1.09003 * 109.47143 * 178.80721 * 1 2 3 23 23 H 1.09003 * 109.46740 * 298.80493 * 1 2 3 24 24 H 1.08994 * 109.47042 * 58.80457 * 1 2 3 25 25 H 1.08999 * 109.60941 * 41.02074 * 4 2 1 26 26 H 1.08997 * 109.74829 * 280.60320 * 4 2 1 27 27 H 1.00900 * 111.00511 * 219.85007 * 5 4 2 28 28 H 1.09008 * 108.82050 * 197.28392 * 6 5 4 29 29 H 1.09001 * 108.81960 * 78.99021 * 6 5 4 30 30 H 0.97001 * 120.00286 * 180.02562 * 12 11 9 31 31 H 1.08994 * 115.55050 * 300.51935 * 18 17 7 32 32 H 1.09003 * 117.49773 * 359.97438 * 19 18 17 33 33 H 1.08997 * 117.49864 * 145.02333 * 19 18 17 34 34 H 1.08997 * 117.50036 * 214.97881 * 20 18 17 35 35 H 1.09007 * 117.49568 * 359.97438 * 20 18 17 36 36 H 1.09007 * 108.93898 * 302.18678 * 21 2 1 37 37 H 1.08996 * 108.93867 * 60.78822 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8833 1.0312 0.0000 4 6 2.0321 -0.7027 -1.2781 5 7 3.4024 -0.3159 -1.5090 6 6 4.4030 -1.2444 -0.9319 7 6 4.0215 -1.7306 0.4779 8 1 3.2766 -2.5214 0.3885 9 6 5.2482 -2.2937 1.1478 10 1 5.6600 -1.8057 2.0189 11 6 5.8451 -3.4321 0.6488 12 7 5.3434 -4.0266 -0.4115 13 14 7.3661 -4.1297 1.4788 14 1 7.7281 -3.2815 2.6427 15 1 7.0871 -5.5129 1.9416 16 1 8.4928 -4.1492 0.5117 17 7 3.4839 -0.6745 1.3006 18 6 3.9259 -0.8161 2.6943 19 6 3.9702 0.4491 3.5535 20 6 5.2721 -0.1967 3.0750 21 6 2.0057 -0.6658 1.2108 22 1 -0.3633 -1.0275 -0.0214 23 1 -0.3633 0.4952 0.9005 24 1 -0.3633 0.5323 -0.8790 25 1 1.4187 -0.4004 -2.1268 26 1 1.9735 -1.7837 -1.1512 27 1 3.5746 -0.1639 -2.4915 28 1 5.3658 -0.7358 -0.8799 29 1 4.4997 -2.1094 -1.5880 30 1 5.7630 -4.8277 -0.7624 31 1 3.6442 -1.7480 3.1844 32 1 3.6718 1.3867 3.0844 33 1 3.7175 0.3498 4.6091 34 1 5.8759 -0.7208 3.8158 35 1 5.8300 0.3157 2.2911 36 1 1.6015 -0.1484 2.0810 37 1 1.6451 -1.6943 1.2139 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219417708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:59 Heat of formation + Delta-G solvation = 24.349161 kcal Electronic energy + Delta-G solvation = -16699.770187 eV Core-core repulsion = 14284.286979 eV Total energy + Delta-G solvation = -2415.483207 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.45458 -37.72178 -35.60165 -34.44737 -33.44332 -29.42748 -27.24402 -26.08868 -25.13615 -23.15558 -21.97918 -20.80892 -20.65292 -18.36037 -17.25454 -16.70768 -16.54725 -16.15664 -15.46014 -15.28690 -14.94000 -14.35932 -13.95881 -13.59046 -13.52172 -13.02321 -12.92938 -12.78797 -12.49617 -12.27004 -12.17839 -12.04470 -11.75632 -11.49396 -11.39452 -11.25531 -10.77442 -10.60184 -10.18365 -9.04538 -8.84594 -8.13957 -6.22528 1.37169 1.39898 1.50951 2.40781 3.09210 3.15465 3.22824 3.58394 4.07686 4.15925 4.26614 4.33208 4.40213 4.55666 4.71901 4.76441 4.79274 4.83538 4.84710 4.90979 4.99524 5.00534 5.11628 5.22832 5.31182 5.33244 5.42984 5.49117 5.57403 5.78031 5.83023 6.04314 6.43173 6.54118 6.82629 6.84006 7.05807 7.48545 8.94406 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.011384 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.606373 B = 2459.057382 C = 3174.833649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 H 0.076 0.924 4 C 0.080 3.920 5 N -0.699 5.699 6 C 0.108 3.892 7 C 0.227 3.773 8 H -0.041 1.041 9 C -0.540 4.540 10 H 0.099 0.901 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.953 3.047 14 H -0.259 1.259 15 H -0.286 1.286 16 H -0.283 1.283 17 N -0.496 5.496 18 C 0.021 3.979 19 C -0.152 4.152 20 C -0.158 4.158 21 C 0.069 3.931 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.082 0.918 26 H -0.001 1.001 27 H 0.337 0.663 28 H 0.035 0.965 29 H 0.012 0.988 30 H 0.257 0.743 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.074 0.926 37 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 7.824 2.916 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 H 0.095 0.905 4 C -0.050 4.050 5 N -0.330 5.330 6 C -0.021 4.021 7 C 0.119 3.881 8 H -0.024 1.024 9 C -0.578 4.578 10 H 0.116 0.884 11 C -0.190 4.190 12 N -0.567 5.567 13 Si 0.779 3.221 14 H -0.183 1.183 15 H -0.213 1.213 16 H -0.209 1.209 17 N -0.219 5.219 18 C -0.088 4.088 19 C -0.189 4.189 20 C -0.195 4.195 21 C -0.058 4.058 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.018 0.982 27 H 0.154 0.846 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -6.074 8.495 3.170 10.914 hybrid contribution 0.672 -2.658 -0.430 2.775 sum -5.402 5.837 2.740 8.412 Atomic orbital electron populations 1.21768 0.93031 1.01596 1.02940 1.20126 0.95795 1.00444 0.93518 0.90520 1.21591 0.89316 0.95720 0.98373 1.58887 1.02947 1.51834 1.19292 1.22018 0.92820 0.91254 0.96031 1.18712 0.93404 0.85897 0.90115 1.02368 1.22490 1.11734 1.09559 1.14061 0.88362 1.25829 1.00202 0.97383 0.95590 1.70115 1.41819 1.20377 1.24406 0.85563 0.79610 0.78007 0.78915 1.18301 1.21251 1.20938 1.61414 1.07329 1.47111 1.06044 1.21862 1.02302 0.94923 0.89680 1.23196 1.00392 0.96193 0.99135 1.22757 0.90963 1.03601 1.02211 1.21053 0.88158 0.97392 0.99229 0.93585 0.91394 0.90927 0.89926 0.98230 0.84577 0.94665 0.96958 0.93366 0.92636 0.88562 0.87185 0.89004 0.90108 0.90729 0.98375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.00 71.98 0.65 -2.67 16 2 C -0.08 -2.61 2.59 -12.48 -0.03 -2.64 16 3 H 0.08 2.60 8.12 -2.38 -0.02 2.59 16 4 C 0.08 2.93 5.51 87.22 0.48 3.41 16 5 N -0.70 -28.25 6.32 -512.86 -3.24 -31.49 16 6 C 0.11 5.41 5.76 86.37 0.50 5.90 16 7 C 0.23 11.82 1.63 44.98 0.07 11.90 16 8 H -0.04 -2.48 6.53 -2.39 -0.02 -2.49 16 9 C -0.54 -29.49 7.39 25.60 0.19 -29.30 16 10 H 0.10 5.10 3.77 -2.91 -0.01 5.09 16 11 C 0.01 0.47 5.32 84.65 0.45 0.92 16 12 N -0.93 -54.73 11.91 21.45 0.26 -54.47 16 13 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 14 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 17 N -0.50 -21.87 4.51 -864.38 -3.89 -25.76 16 18 C 0.02 0.87 3.32 44.92 0.15 1.02 16 19 C -0.15 -4.73 10.39 30.60 0.32 -4.41 16 20 C -0.16 -5.85 7.80 30.59 0.24 -5.62 16 21 C 0.07 2.64 4.20 83.96 0.35 2.99 16 22 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 25 H 0.08 2.44 8.00 -2.39 -0.02 2.42 16 26 H 0.00 -0.03 6.98 -2.39 -0.02 -0.05 16 27 H 0.34 11.93 8.89 -89.69 -0.80 11.13 16 28 H 0.03 1.85 7.97 -2.38 -0.02 1.83 16 29 H 0.01 0.68 6.97 -2.39 -0.02 0.66 16 30 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.06 2.44 8.11 -2.39 -0.02 2.42 16 32 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 36 H 0.07 2.49 7.78 -2.38 -0.02 2.47 16 37 H 0.00 -0.09 7.38 -2.39 -0.02 -0.10 16 Total: -1.00 -62.39 282.29 -1.25 -63.64 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.24 Total: 20.54 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 3.37 Total: -18.51 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -6.88 Total: -111.72 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -62.39 -1.25 -63.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219417708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.985 kcal (2) G-P(sol) polarization free energy of solvation -62.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds