Wall clock time and date at job start Mon Mar 30 2020 20:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47206 * 2 1 4 4 C 1.52996 * 109.47073 * 239.99693 * 2 1 3 5 5 C 1.50703 * 109.47216 * 174.64080 * 4 2 1 6 6 H 1.07996 * 119.99885 * 354.95649 * 5 4 2 7 7 C 1.37883 * 120.00061 * 174.95373 * 5 4 2 8 8 N 1.31509 * 119.99973 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00056 * 359.72812 * 7 5 4 10 10 H 1.48496 * 109.47110 * 270.27502 * 9 7 5 11 11 H 1.48500 * 109.47014 * 30.26961 * 9 7 5 12 12 H 1.48493 * 109.47299 * 150.27264 * 9 7 5 13 13 N 1.46899 * 109.46851 * 120.00046 * 2 1 3 14 14 C 1.50248 * 111.00100 * 63.06865 * 13 2 1 15 15 C 1.55981 * 106.22806 * 214.08134 * 14 13 2 16 16 C 1.50798 * 102.83478 * 353.81519 * 15 14 13 17 17 H 1.09002 * 110.09071 * 278.02211 * 16 15 14 18 18 C 1.50494 * 125.13135 * 143.21787 * 16 15 14 19 19 N 1.49560 * 104.87836 * 215.84783 * 18 16 15 20 20 C 1.50043 * 107.73458 * 6.92875 * 19 18 16 21 21 C 1.44269 * 111.00036 * 309.32930 * 13 2 1 22 22 H 1.08995 * 109.95962 * 51.26383 * 21 13 2 23 23 H 1.09001 * 109.47697 * 186.69443 * 1 2 3 24 24 H 1.09010 * 109.47228 * 306.69991 * 1 2 3 25 25 H 1.09009 * 109.47240 * 66.69380 * 1 2 3 26 26 H 1.09003 * 109.46986 * 54.64060 * 4 2 1 27 27 H 1.08999 * 109.47225 * 294.64289 * 4 2 1 28 28 H 0.96997 * 120.00301 * 179.72261 * 8 7 5 29 29 H 1.08991 * 110.10441 * 333.27479 * 14 13 2 30 30 H 1.09001 * 110.09971 * 94.89328 * 14 13 2 31 31 H 1.08998 * 110.73487 * 112.15015 * 15 14 13 32 32 H 1.08996 * 110.74333 * 235.47246 * 15 14 13 33 33 H 1.08999 * 110.35834 * 334.69839 * 18 16 15 34 34 H 1.08999 * 110.35780 * 97.00108 * 18 16 15 35 35 H 1.00905 * 110.99766 * 128.64810 * 19 18 16 36 36 H 1.09001 * 110.82492 * 143.37564 * 20 19 18 37 37 H 1.08998 * 110.82241 * 266.73281 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5411 -0.6074 -1.3174 6 1 4.0705 -0.0063 -0.5930 7 6 4.2387 -1.2708 -2.3045 8 7 5.5486 -1.1711 -2.3643 9 14 3.3238 -2.3169 -3.5527 10 1 3.2038 -3.7059 -3.0415 11 1 1.9683 -1.7519 -3.7733 12 1 4.0717 -2.3243 -4.8355 13 7 2.0196 -0.6925 1.1994 14 6 1.6000 -2.1352 1.1972 15 6 1.3487 -2.5184 2.6882 16 6 1.8027 -1.2875 3.4315 17 1 2.8860 -1.3010 3.5520 18 6 1.1516 -0.7347 4.6706 19 7 1.2652 0.7504 4.5342 20 6 1.8119 1.0433 3.1680 21 6 1.3871 -0.1763 2.3889 22 1 0.3044 -0.1730 2.2630 23 1 -0.3634 -1.0206 0.1198 24 1 -0.3634 0.6142 0.8240 25 1 -0.3634 0.4066 -0.9439 26 1 1.6003 -0.2659 -2.1366 27 1 1.7571 -1.7729 -1.2025 28 1 6.0398 -1.6410 -3.0562 29 1 0.6842 -2.2582 0.6193 30 1 2.3933 -2.7553 0.7796 31 1 0.2898 -2.7074 2.8648 32 1 1.9486 -3.3834 2.9709 33 1 0.1039 -1.0325 4.7135 34 1 1.6803 -1.0752 5.5609 35 1 0.3696 1.1954 4.6684 36 1 1.3574 1.9433 2.7536 37 1 2.8974 1.1375 3.1970 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615801708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:45 Heat of formation + Delta-G solvation = 32.318508 kcal Electronic energy + Delta-G solvation = -16422.691470 eV Core-core repulsion = 14007.553839 eV Total energy + Delta-G solvation = -2415.137630 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47668 -36.53513 -33.50549 -32.19953 -29.94756 -27.93101 -27.54635 -26.82398 -23.07359 -22.16530 -20.86410 -19.89635 -18.25440 -16.65236 -16.46563 -15.84099 -15.01528 -14.42337 -14.27592 -13.78756 -13.28361 -12.86899 -12.60063 -12.39568 -12.16036 -12.02922 -11.65307 -11.56242 -11.31437 -11.18655 -10.88451 -10.73700 -10.37251 -10.26336 -9.75767 -9.74176 -9.49416 -9.09495 -8.52798 -8.44564 -7.70267 -5.93087 -3.87756 3.32658 3.40937 3.42979 4.04188 4.16470 4.51570 4.60810 4.90943 5.25967 5.32545 5.39065 5.45080 5.49543 5.58665 5.61675 5.70978 5.73640 5.81478 5.86622 5.92058 6.05892 6.18445 6.25935 6.33647 6.47967 6.48688 6.61077 6.63513 6.71615 7.06387 7.31164 7.33149 7.51600 7.79248 7.93185 8.68928 9.19145 9.69437 11.20904 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.039141 B = 0.007771 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.189131 B = 3602.323885 C = 3618.482123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.082 3.918 3 H 0.078 0.922 4 C -0.007 4.007 5 C -0.494 4.494 6 H 0.079 0.921 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.289 1.289 13 N -0.458 5.458 14 C 0.036 3.964 15 C -0.110 4.110 16 C -0.125 4.125 17 H 0.090 0.910 18 C 0.061 3.939 19 N -0.681 5.681 20 C 0.067 3.933 21 C 0.014 3.986 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.260 0.740 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.333 0.667 36 H 0.065 0.935 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.759 -0.111 10.617 15.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.027 4.027 3 H 0.097 0.903 4 C -0.044 4.044 5 C -0.532 4.532 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.194 1.194 12 H -0.215 1.215 13 N -0.181 5.181 14 C -0.091 4.091 15 C -0.149 4.149 16 C -0.145 4.145 17 H 0.108 0.892 18 C -0.067 4.067 19 N -0.309 5.309 20 C -0.062 4.062 21 C -0.098 4.098 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.375 -0.009 10.867 15.025 hybrid contribution -2.101 -0.926 -1.484 2.734 sum -12.476 -0.934 9.383 15.639 Atomic orbital electron populations 1.22575 0.99807 1.01046 1.01263 1.21873 0.89861 0.99110 0.91808 0.90346 1.19689 0.98134 0.94950 0.91668 1.21041 0.89312 1.29659 1.13168 0.90324 1.25003 0.94654 0.96594 0.97418 1.69907 1.06170 1.43997 1.34501 0.86908 0.80309 0.81265 0.81497 1.20543 1.19427 1.21549 1.64778 1.52003 1.01237 1.00107 1.23736 1.00164 0.90735 0.94481 1.21811 1.00361 0.97246 0.95483 1.22268 1.02371 0.95774 0.94086 0.89152 1.21878 0.99069 0.88030 0.97757 1.63275 1.30597 1.08238 1.28797 1.22110 1.01854 0.95735 0.86515 1.23318 0.96872 0.96640 0.92944 0.93926 0.92948 0.93610 0.92282 0.96580 0.96894 0.93014 0.93309 0.89366 0.92254 0.91003 0.93486 0.90462 0.85242 0.91645 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 8.13 37.16 0.30 -2.73 16 2 C 0.08 1.62 2.50 -67.72 -0.17 1.45 16 3 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 4 C -0.01 -0.16 3.34 -27.88 -0.09 -0.26 16 5 C -0.49 -14.00 9.40 -34.44 -0.32 -14.33 16 6 H 0.08 2.46 7.99 -52.49 -0.42 2.04 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -28.28 13.96 55.43 0.77 -27.51 16 9 Si 0.87 21.86 27.37 -169.99 -4.65 17.21 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.49 6.70 56.52 0.38 -6.11 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 N -0.46 -8.67 5.10 -213.96 -1.09 -9.76 16 14 C 0.04 0.62 5.11 -0.35 0.00 0.62 16 15 C -0.11 -1.53 6.80 -26.24 -0.18 -1.70 16 16 C -0.13 -1.78 3.02 -90.26 -0.27 -2.05 16 17 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 18 C 0.06 0.73 7.43 -3.59 -0.03 0.71 16 19 N -0.68 -8.45 7.56 -111.80 -0.84 -9.29 16 20 C 0.07 0.95 7.46 -3.15 -0.02 0.93 16 21 C 0.01 0.21 1.94 -67.50 -0.13 0.08 16 22 H 0.04 0.65 5.79 -51.93 -0.30 0.35 16 23 H 0.05 0.82 5.97 -51.93 -0.31 0.51 16 24 H 0.04 0.66 6.57 -51.92 -0.34 0.32 16 25 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 26 H 0.02 0.38 7.56 -51.93 -0.39 -0.01 16 27 H 0.01 0.30 5.83 -51.93 -0.30 0.00 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.05 0.82 5.40 -51.93 -0.28 0.54 16 30 H 0.09 1.72 8.12 -51.93 -0.42 1.30 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.33 3.46 8.94 -39.29 -0.35 3.11 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 279.25 15.07 4.21 4.21 Total: -1.00 -30.42 279.25 -8.70 -39.13 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.08 Total: 1.54 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -1.02 Total: -15.53 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -1.16 Total: -46.56 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.65 Total: 17.21 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.42 -8.70 -39.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615801708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.447 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds