Wall clock time and date at job start Mon Mar 30 2020 20:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47206 * 2 1 4 4 C 1.52996 * 109.47073 * 239.99693 * 2 1 3 5 5 C 1.50703 * 109.47216 * 174.64080 * 4 2 1 6 6 H 1.07996 * 119.99885 * 354.95649 * 5 4 2 7 7 C 1.37883 * 120.00061 * 174.95373 * 5 4 2 8 8 N 1.31509 * 119.99973 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00056 * 359.72812 * 7 5 4 10 10 H 1.48496 * 109.47110 * 270.27502 * 9 7 5 11 11 H 1.48500 * 109.47014 * 30.26961 * 9 7 5 12 12 H 1.48493 * 109.47299 * 150.27264 * 9 7 5 13 13 N 1.46899 * 109.46851 * 120.00046 * 2 1 3 14 14 C 1.50248 * 111.00100 * 63.06865 * 13 2 1 15 15 C 1.55981 * 106.22806 * 214.08134 * 14 13 2 16 16 C 1.50798 * 102.83478 * 353.81519 * 15 14 13 17 17 H 1.09002 * 110.09071 * 278.02211 * 16 15 14 18 18 C 1.50494 * 125.13135 * 143.21787 * 16 15 14 19 19 N 1.49560 * 104.87836 * 215.84783 * 18 16 15 20 20 C 1.50043 * 107.73458 * 6.92875 * 19 18 16 21 21 C 1.44269 * 111.00036 * 309.32930 * 13 2 1 22 22 H 1.08995 * 109.95962 * 51.26383 * 21 13 2 23 23 H 1.09001 * 109.47697 * 186.69443 * 1 2 3 24 24 H 1.09010 * 109.47228 * 306.69991 * 1 2 3 25 25 H 1.09009 * 109.47240 * 66.69380 * 1 2 3 26 26 H 1.09003 * 109.46986 * 54.64060 * 4 2 1 27 27 H 1.08999 * 109.47225 * 294.64289 * 4 2 1 28 28 H 0.96997 * 120.00301 * 179.72261 * 8 7 5 29 29 H 1.08991 * 110.10441 * 333.27479 * 14 13 2 30 30 H 1.09001 * 110.09971 * 94.89328 * 14 13 2 31 31 H 1.08998 * 110.73487 * 112.15015 * 15 14 13 32 32 H 1.08996 * 110.74333 * 235.47246 * 15 14 13 33 33 H 1.08999 * 110.35834 * 334.69839 * 18 16 15 34 34 H 1.08999 * 110.35780 * 97.00108 * 18 16 15 35 35 H 1.00905 * 110.99766 * 128.64810 * 19 18 16 36 36 H 1.09001 * 110.82492 * 143.37564 * 20 19 18 37 37 H 1.08998 * 110.82241 * 266.73281 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5411 -0.6074 -1.3174 6 1 4.0705 -0.0063 -0.5930 7 6 4.2387 -1.2708 -2.3045 8 7 5.5486 -1.1711 -2.3643 9 14 3.3238 -2.3169 -3.5527 10 1 3.2038 -3.7059 -3.0415 11 1 1.9683 -1.7519 -3.7733 12 1 4.0717 -2.3243 -4.8355 13 7 2.0196 -0.6925 1.1994 14 6 1.6000 -2.1352 1.1972 15 6 1.3487 -2.5184 2.6882 16 6 1.8027 -1.2875 3.4315 17 1 2.8860 -1.3010 3.5520 18 6 1.1516 -0.7347 4.6706 19 7 1.2652 0.7504 4.5342 20 6 1.8119 1.0433 3.1680 21 6 1.3871 -0.1763 2.3889 22 1 0.3044 -0.1730 2.2630 23 1 -0.3634 -1.0206 0.1198 24 1 -0.3634 0.6142 0.8240 25 1 -0.3634 0.4066 -0.9439 26 1 1.6003 -0.2659 -2.1366 27 1 1.7571 -1.7729 -1.2025 28 1 6.0398 -1.6410 -3.0562 29 1 0.6842 -2.2582 0.6193 30 1 2.3933 -2.7553 0.7796 31 1 0.2898 -2.7074 2.8648 32 1 1.9486 -3.3834 2.9709 33 1 0.1039 -1.0325 4.7135 34 1 1.6803 -1.0752 5.5609 35 1 0.3696 1.1954 4.6684 36 1 1.3574 1.9433 2.7536 37 1 2.8974 1.1375 3.1970 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615801708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:45 Heat of formation + Delta-G solvation = 8.834932 kcal Electronic energy + Delta-G solvation = -16423.709794 eV Core-core repulsion = 14007.553839 eV Total energy + Delta-G solvation = -2416.155955 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.71443 -37.87062 -35.13820 -34.03818 -31.42918 -29.54847 -28.81997 -27.99348 -24.89471 -23.46829 -22.29561 -21.04967 -19.69302 -18.82689 -17.74674 -16.95746 -16.49156 -16.09630 -15.69508 -15.04142 -14.76668 -14.54134 -14.02980 -13.93449 -13.60760 -13.41620 -13.06462 -12.80045 -12.75753 -12.55569 -12.41618 -12.13549 -11.97117 -11.72833 -11.52144 -11.33372 -11.15223 -10.93478 -10.69562 -9.53307 -9.06734 -8.20607 -6.20524 1.33948 1.35907 1.46954 2.38764 2.82046 3.11410 3.16806 3.38453 3.80783 4.04344 4.10779 4.18523 4.32259 4.34246 4.42288 4.45614 4.52616 4.64743 4.72012 4.74206 4.86939 4.97678 5.00124 5.04865 5.10109 5.17912 5.20174 5.29884 5.36573 5.53789 5.59387 5.71211 6.12262 6.34926 6.46759 6.53010 6.87382 7.40307 8.97148 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.039141 B = 0.007771 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.189131 B = 3602.323885 C = 3618.482123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.084 3.916 3 H 0.058 0.942 4 C -0.003 4.003 5 C -0.494 4.494 6 H 0.030 0.970 7 C -0.002 4.002 8 N -0.957 5.957 9 Si 0.945 3.055 10 H -0.270 1.270 11 H -0.248 1.248 12 H -0.288 1.288 13 N -0.494 5.494 14 C 0.032 3.968 15 C -0.099 4.099 16 C -0.118 4.118 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.681 5.681 20 C 0.068 3.932 21 C 0.011 3.989 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.262 0.738 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.349 0.651 36 H 0.076 0.924 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.066 -0.891 11.257 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.024 4.024 3 H 0.076 0.924 4 C -0.040 4.040 5 C -0.533 4.533 6 H 0.048 0.952 7 C -0.197 4.197 8 N -0.600 5.600 9 Si 0.769 3.231 10 H -0.195 1.195 11 H -0.171 1.171 12 H -0.214 1.214 13 N -0.218 5.218 14 C -0.095 4.095 15 C -0.137 4.137 16 C -0.138 4.138 17 H 0.077 0.923 18 C -0.061 4.061 19 N -0.311 5.311 20 C -0.061 4.061 21 C -0.100 4.100 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.165 0.835 36 H 0.095 0.905 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.713 -0.777 11.530 17.933 hybrid contribution -0.969 -0.610 -1.614 1.979 sum -14.682 -1.387 9.916 17.771 Atomic orbital electron populations 1.22416 0.96239 1.02166 1.02597 1.21657 0.92608 0.97440 0.90707 0.92381 1.19617 0.94622 0.95834 0.93951 1.21266 0.92033 1.28296 1.11667 0.95155 1.25963 0.95458 0.98299 0.99975 1.70085 1.08280 1.45744 1.35865 0.85740 0.79656 0.79459 0.78238 1.19501 1.17134 1.21362 1.64631 1.53794 1.02353 1.00999 1.23718 0.99175 0.89406 0.97174 1.21747 1.02301 0.97099 0.92555 1.22237 1.00832 0.95687 0.95038 0.92299 1.21896 1.00434 0.87245 0.96530 1.63198 1.31823 1.08926 1.27159 1.22003 1.00446 0.96051 0.87606 1.23366 0.97368 0.97585 0.91674 0.92252 0.92004 0.91478 0.91605 0.96271 0.96254 0.92963 0.92296 0.92848 0.89266 0.90352 0.90839 0.89770 0.83461 0.90532 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.13 8.13 71.98 0.59 -4.55 16 2 C 0.08 3.30 2.50 44.91 0.11 3.41 16 3 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.00 -0.13 3.34 29.85 0.10 -0.03 16 5 C -0.49 -29.07 9.40 25.60 0.24 -28.83 16 6 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 7 C 0.00 -0.11 5.47 84.66 0.46 0.35 16 8 N -0.96 -62.07 13.96 21.45 0.30 -61.77 16 9 Si 0.94 45.26 27.37 68.60 1.88 47.14 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.25 -10.92 6.70 99.48 0.67 -10.25 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 13 N -0.49 -18.72 5.10 -830.82 -4.24 -22.95 16 14 C 0.03 1.09 5.11 86.68 0.44 1.54 16 15 C -0.10 -2.50 6.80 30.91 0.21 -2.28 16 16 C -0.12 -3.16 3.02 -10.56 -0.03 -3.19 16 17 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 18 C 0.07 1.40 7.43 84.97 0.63 2.03 16 19 N -0.68 -15.25 7.56 -507.62 -3.84 -19.08 16 20 C 0.07 1.89 7.46 84.98 0.63 2.52 16 21 C 0.01 0.33 1.94 46.46 0.09 0.42 16 22 H 0.06 1.57 5.79 -2.39 -0.01 1.56 16 23 H 0.06 1.70 5.97 -2.39 -0.01 1.69 16 24 H 0.07 1.68 6.57 -2.38 -0.02 1.67 16 25 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.02 0.88 7.56 -2.39 -0.02 0.87 16 27 H 0.02 0.88 5.83 -2.39 -0.01 0.87 16 28 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 29 H 0.06 1.84 5.40 -2.39 -0.01 1.83 16 30 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.35 6.05 8.94 -89.69 -0.80 5.25 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.53 279.25 -2.22 -70.75 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.20 Total: 14.54 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 3.48 Total: -28.61 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -7.77 Total: -103.81 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Total: -68.53 -2.22 -70.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615801708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.585 kcal (2) G-P(sol) polarization free energy of solvation -68.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds