Wall clock time and date at job start Mon Mar 30 2020 20:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38311 * 119.92205 * 2 1 4 4 C 1.38085 * 120.07613 * 180.28027 * 3 2 1 5 5 C 1.38930 * 119.92033 * 359.97438 * 4 3 2 6 6 N 1.39685 * 120.07240 * 180.02562 * 5 4 3 7 7 C 1.38889 * 119.85579 * 0.02562 * 5 4 3 8 8 S 1.76197 * 120.03839 * 180.02562 * 7 5 4 9 9 O 1.42106 * 103.00107 * 168.10252 * 8 7 5 10 10 C 1.76200 * 103.00115 * 274.97621 * 8 7 5 11 11 H 1.07995 * 119.99731 * 0.02562 * 10 8 7 12 12 C 1.37875 * 120.00094 * 180.02562 * 10 8 7 13 13 N 1.31521 * 119.99978 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00060 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47016 * 59.99501 * 14 12 10 16 16 H 1.48502 * 109.46865 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46701 * 299.99677 * 14 12 10 18 18 C 1.38122 * 119.92369 * 359.97438 * 7 5 4 19 19 H 1.09000 * 109.47071 * 269.71943 * 1 2 3 20 20 H 1.08994 * 109.47500 * 29.72206 * 1 2 3 21 21 H 1.09008 * 109.47004 * 149.72945 * 1 2 3 22 22 H 1.07997 * 119.96190 * 0.25953 * 3 2 1 23 23 H 1.07996 * 120.03822 * 179.97438 * 4 3 2 24 24 H 0.96992 * 119.99904 * 179.97438 * 6 5 4 25 25 H 0.97001 * 119.99806 * 359.97438 * 6 5 4 26 26 H 0.97001 * 120.00169 * 180.02562 * 13 12 10 27 27 H 1.07995 * 119.96625 * 179.97438 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2025 -0.0058 5 6 4.2739 0.0002 -0.0112 6 7 5.6708 0.0003 -0.0166 7 6 3.5780 -1.2018 -0.0112 8 16 4.4561 -2.7293 -0.0173 9 8 3.4418 -3.6823 0.2698 10 6 4.7768 -2.9954 -1.7293 11 1 4.4364 -2.2771 -2.4604 12 6 5.4624 -4.1205 -2.1355 13 7 5.8774 -4.9950 -1.2451 14 14 5.8030 -4.4022 -3.9505 15 1 6.6129 -3.2769 -4.4826 16 1 6.5503 -5.6739 -4.1223 17 1 4.5172 -4.4793 -4.6892 18 6 2.1968 -1.1983 -0.0053 19 1 -0.3633 -0.0050 1.0277 20 1 -0.3634 0.8924 -0.5095 21 1 -0.3633 -0.8876 -0.5181 22 1 1.6550 2.1329 0.0042 23 1 4.1158 2.1388 -0.0063 24 1 6.1557 -0.8397 -0.0199 25 1 6.1557 0.8403 -0.0170 26 1 6.3600 -5.7864 -1.5309 27 1 1.6550 -2.1325 -0.0057 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088065521.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:21 Heat of formation + Delta-G solvation = -35.563056 kcal Electronic energy + Delta-G solvation = -13151.285546 eV Core-core repulsion = 10806.572370 eV Total energy + Delta-G solvation = -2344.713176 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.67315 -34.61631 -33.53459 -32.80446 -30.26553 -30.11192 -25.76288 -25.20276 -22.36096 -20.70968 -17.99365 -16.67352 -16.41648 -15.52784 -15.19909 -14.18940 -13.77178 -13.52017 -13.25287 -13.03400 -12.98941 -12.15032 -11.74656 -11.61514 -11.32607 -11.09630 -10.79349 -10.73500 -10.37151 -10.22069 -9.79955 -9.02091 -8.45740 -8.28501 -7.04104 -6.87063 -6.28640 -4.79926 1.92537 2.23286 3.14324 3.19976 3.23063 3.79872 4.22861 4.38570 4.48371 4.84416 5.39083 5.47915 5.53791 5.75670 5.79417 5.96231 5.99899 6.21670 6.25893 6.59317 6.69519 6.81106 7.08813 7.27837 7.51273 7.53252 8.05176 8.26212 8.32397 9.11084 10.47912 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033219 B = 0.009339 C = 0.008906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.701201 B = 2997.401415 C = 3143.201484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.174 4.174 3 C -0.064 4.064 4 C -0.220 4.220 5 C 0.273 3.727 6 N -0.872 5.872 7 C -0.513 4.513 8 S 1.402 4.598 9 O -0.913 6.913 10 C -0.819 4.819 11 H 0.078 0.922 12 C 0.120 3.880 13 N -0.867 5.867 14 Si 0.906 3.094 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.272 1.272 18 C -0.011 4.011 19 H 0.057 0.943 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.110 0.890 23 H 0.113 0.887 24 H 0.404 0.596 25 H 0.394 0.606 26 H 0.281 0.719 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.861 10.739 2.708 11.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.177 4.177 3 C -0.083 4.083 4 C -0.243 4.243 5 C 0.166 3.834 6 N -0.412 5.412 7 C -0.609 4.609 8 S 1.599 4.401 9 O -0.907 6.907 10 C -0.959 4.959 11 H 0.096 0.904 12 C -0.092 4.092 13 N -0.501 5.501 14 Si 0.731 3.269 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.197 1.197 18 C -0.030 4.030 19 H 0.076 0.924 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.128 0.872 23 H 0.131 0.869 24 H 0.235 0.765 25 H 0.221 0.779 26 H 0.091 0.909 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.120 10.019 3.557 10.691 hybrid contribution -1.334 -0.083 -2.567 2.894 sum -0.214 9.937 0.989 9.988 Atomic orbital electron populations 1.20595 0.92279 1.01630 1.01150 1.19709 0.95382 0.93548 1.09070 1.20638 0.93532 0.96631 0.97491 1.20497 0.94399 0.95921 1.13527 1.17222 0.83665 0.92503 0.90010 1.42599 1.03231 1.10969 1.84383 1.28531 1.02609 1.15802 1.13958 1.67374 1.02047 0.78043 0.92615 1.92812 1.58242 1.55901 1.83773 1.27511 1.43901 1.12891 1.11631 0.90367 1.24737 0.91859 0.93413 0.99190 1.69842 1.34291 1.10983 1.34957 0.86439 0.78873 0.77861 0.83717 1.19217 1.20549 1.19709 1.20776 0.93314 0.97175 0.91748 0.92416 0.92646 0.92325 0.87158 0.86924 0.76526 0.77878 0.90874 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.01 36.00 0.36 -1.17 15 2 C -0.17 -3.28 5.88 -104.59 -0.62 -3.90 15 3 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 15 4 C -0.22 -3.66 9.90 -39.38 -0.39 -4.05 15 5 C 0.27 5.06 6.74 -83.78 -0.56 4.49 15 6 N -0.87 -12.82 9.02 32.41 0.29 -12.53 15 7 C -0.51 -11.46 5.62 -39.38 -0.22 -11.68 15 8 S 1.40 34.78 11.90 -107.50 -1.28 33.50 15 9 O -0.91 -28.16 16.39 -35.23 -0.58 -28.73 15 10 C -0.82 -22.56 9.34 30.60 0.29 -22.27 15 11 H 0.08 2.18 7.81 -52.49 -0.41 1.77 15 12 C 0.12 3.28 5.46 -17.82 -0.10 3.18 15 13 N -0.87 -24.14 13.19 55.43 0.73 -23.41 15 14 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 15 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 18 C -0.01 -0.24 9.11 -39.61 -0.36 -0.60 15 19 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.05 0.72 8.08 -51.93 -0.42 0.30 15 21 H 0.06 0.91 8.08 -51.92 -0.42 0.49 15 22 H 0.11 1.50 8.06 -52.49 -0.42 1.07 15 23 H 0.11 1.51 8.06 -52.49 -0.42 1.08 15 24 H 0.40 5.90 7.34 -40.82 -0.30 5.60 15 25 H 0.39 4.33 8.84 -40.82 -0.36 3.97 15 26 H 0.28 7.24 8.31 -40.82 -0.34 6.90 15 27 H 0.12 3.00 7.22 -52.49 -0.38 2.62 15 LS Contribution 253.07 15.07 3.81 3.81 Total: -1.00 -35.38 253.07 -6.72 -42.10 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -2.69 Total: 6.85 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: -1.99 Total: -37.45 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 1.02 Total: -35.94 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.58 Total: -28.73 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 34.78 SS G_CDS: -1.28 Total: 33.50 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -35.38 -6.72 -42.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088065521.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.532 kcal (2) G-P(sol) polarization free energy of solvation -35.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds