Wall clock time and date at job start Mon Mar 30 2020 20:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46930 * 2 1 4 4 C 1.50699 * 109.47061 * 239.99674 * 2 1 3 5 5 H 1.07993 * 119.99868 * 240.00138 * 4 2 1 6 6 C 1.37876 * 119.99774 * 60.00206 * 4 2 1 7 7 N 1.31512 * 120.00327 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99730 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47213 * 60.00327 * 8 6 4 10 10 H 1.48499 * 109.47051 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47215 * 299.99978 * 8 6 4 12 12 N 1.46908 * 109.46735 * 119.99954 * 2 1 3 13 13 C 1.46897 * 110.99682 * 274.04967 * 12 2 1 14 14 H 1.09000 * 109.47453 * 32.56813 * 13 12 2 15 15 C 1.53006 * 109.46930 * 152.56601 * 13 12 2 16 16 C 1.50699 * 109.47280 * 272.56501 * 13 12 2 17 17 C 1.33395 * 125.20078 * 140.00601 * 16 13 12 18 18 C 1.38423 * 114.91799 * 179.97438 * 17 16 13 19 19 C 1.33394 * 114.92144 * 359.97438 * 18 17 16 20 20 S 1.75881 * 109.59449 * 359.75608 * 19 18 17 21 21 H 1.08999 * 109.46703 * 59.14375 * 1 2 3 22 22 H 1.08992 * 109.47324 * 179.14779 * 1 2 3 23 23 H 1.09005 * 109.47307 * 299.14805 * 1 2 3 24 24 H 0.97002 * 120.00313 * 180.02562 * 7 6 4 25 25 H 1.00891 * 110.99563 * 150.10203 * 12 2 1 26 26 H 1.09000 * 109.46939 * 55.57275 * 15 13 12 27 27 H 1.09004 * 109.46957 * 175.56746 * 15 13 12 28 28 H 1.08994 * 109.46919 * 295.57093 * 15 13 12 29 29 H 1.08001 * 122.54280 * 359.97438 * 17 16 13 30 30 H 1.08004 * 122.53829 * 180.02562 * 18 17 16 31 31 H 1.07997 * 125.19968 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8280 -2.5199 -4.0081 10 1 1.8279 -0.4194 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.1037 0.2279 2.3413 14 1 1.3142 0.9754 2.2643 15 6 1.9368 -0.5581 3.6434 16 6 3.4461 0.9128 2.3366 17 6 3.6548 2.1977 2.6281 18 6 4.9760 2.6045 2.5577 19 6 5.8403 1.6500 2.2096 20 16 4.9783 0.1383 1.9544 21 1 -0.3633 0.5271 -0.8822 22 1 -0.3633 -1.0275 -0.0153 23 1 -0.3634 0.5006 0.8976 24 1 0.7090 1.1613 -3.4844 25 1 2.9100 -1.1335 1.0243 26 1 2.6778 -1.3564 3.6834 27 1 2.0774 0.1111 4.4922 28 1 0.9363 -0.9887 3.6820 29 1 2.8536 2.8696 2.8985 30 1 5.2838 3.6179 2.7695 31 1 6.9067 1.7840 2.1043 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871458.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:53 Heat of formation + Delta-G solvation = 25.956941 kcal Electronic energy + Delta-G solvation = -13504.275785 eV Core-core repulsion = 11298.063411 eV Total energy + Delta-G solvation = -2206.212374 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.96844 -36.01788 -33.23415 -30.72233 -28.21490 -27.12880 -25.11594 -23.75414 -21.24276 -19.87959 -18.95202 -17.03207 -16.12927 -15.33397 -14.80017 -13.92888 -13.82382 -13.23814 -12.93749 -12.44989 -12.39271 -11.91580 -11.79306 -11.59928 -11.29730 -10.93915 -10.76424 -10.70608 -10.36210 -10.23752 -10.11554 -9.91075 -8.83844 -8.48088 -8.27647 -8.10557 -7.39239 -6.00685 -4.06752 1.36991 1.98821 2.37499 3.08804 3.32645 3.36588 3.39599 4.41812 5.10977 5.20285 5.31122 5.32457 5.72246 5.81441 5.84734 5.89689 6.18509 6.32087 6.45778 6.52435 6.65525 6.79561 6.88528 7.14713 7.23093 7.50634 7.78589 7.89925 8.25103 8.34774 8.63243 9.01718 9.58616 11.05766 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.009000 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.488962 B = 3110.375492 C = 3541.362193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.005 0.995 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.677 5.677 13 C 0.146 3.854 14 H 0.088 0.912 15 C -0.131 4.131 16 C -0.174 4.174 17 C -0.155 4.155 18 C -0.130 4.130 19 C -0.232 4.232 20 S 0.107 5.893 21 H 0.081 0.919 22 H 0.032 0.968 23 H 0.004 0.996 24 H 0.261 0.739 25 H 0.330 0.670 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 1.386 10.170 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.022 0.978 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.308 5.308 13 C 0.033 3.967 14 H 0.106 0.894 15 C -0.190 4.190 16 C -0.293 4.293 17 C -0.185 4.185 18 C -0.162 4.162 19 C -0.367 4.367 20 S 0.370 5.630 21 H 0.099 0.901 22 H 0.051 0.949 23 H 0.023 0.977 24 H 0.071 0.929 25 H 0.149 0.851 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.659 -0.207 9.765 11.289 hybrid contribution 0.781 1.704 -0.835 2.052 sum 6.440 1.496 8.931 11.112 Atomic orbital electron populations 1.21735 0.97818 0.99507 0.99234 1.19142 0.92502 0.92618 0.85379 0.97767 1.21189 1.31477 1.12482 0.90462 0.92367 1.24891 0.95033 0.94968 0.98962 1.69883 1.36616 1.22812 1.23518 0.86608 0.79157 0.79800 0.82146 1.20171 1.21310 1.20290 1.60987 1.32397 1.30837 1.06534 1.20333 0.89165 0.93761 0.93414 0.89418 1.21781 1.02318 0.99600 0.95270 1.25872 0.99858 0.98233 1.05361 1.20070 0.97165 0.95382 1.05888 1.20097 0.92740 1.00095 1.03236 1.25520 1.03200 0.96975 1.11038 1.84167 0.98491 1.12171 1.68210 0.90074 0.94898 0.97708 0.92903 0.85071 0.92871 0.93129 0.91690 0.84781 0.84962 0.82480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.18 37.16 0.34 -2.78 16 2 C 0.21 5.40 2.40 -68.86 -0.17 5.23 16 3 H 0.00 0.13 7.71 -51.93 -0.40 -0.27 16 4 C -0.52 -14.37 8.59 -34.44 -0.30 -14.66 16 5 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.66 11.33 55.43 0.63 -25.03 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.68 -14.66 6.06 -102.16 -0.62 -15.28 16 13 C 0.15 2.68 2.83 -68.86 -0.19 2.48 16 14 H 0.09 1.68 7.16 -51.93 -0.37 1.30 16 15 C -0.13 -1.99 9.50 37.16 0.35 -1.64 16 16 C -0.17 -3.06 5.23 -36.00 -0.19 -3.25 16 17 C -0.15 -2.51 10.04 -41.21 -0.41 -2.93 16 18 C -0.13 -1.92 10.18 -41.21 -0.42 -2.33 16 19 C -0.23 -3.38 11.23 29.04 0.33 -3.05 16 20 S 0.11 1.75 22.01 -107.50 -2.37 -0.62 16 21 H 0.08 2.21 6.09 -51.93 -0.32 1.89 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.00 0.09 7.52 -51.93 -0.39 -0.30 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.33 7.14 6.72 -39.30 -0.26 6.88 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 272.60 15.07 4.11 4.11 Total: -1.00 -28.89 272.60 -8.26 -37.15 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.24 Total: 4.39 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -0.75 Total: -21.25 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.01 Total: -40.30 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.37 Total: -0.62 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.89 -8.26 -37.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871458.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.109 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds