Wall clock time and date at job start Mon Mar 30 2020 20:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46930 * 2 1 4 4 C 1.50699 * 109.47061 * 239.99674 * 2 1 3 5 5 H 1.07993 * 119.99868 * 240.00138 * 4 2 1 6 6 C 1.37876 * 119.99774 * 60.00206 * 4 2 1 7 7 N 1.31512 * 120.00327 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99730 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47213 * 60.00327 * 8 6 4 10 10 H 1.48499 * 109.47051 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47215 * 299.99978 * 8 6 4 12 12 N 1.46908 * 109.46735 * 119.99954 * 2 1 3 13 13 C 1.46897 * 110.99682 * 274.04967 * 12 2 1 14 14 H 1.09000 * 109.47453 * 32.56813 * 13 12 2 15 15 C 1.53006 * 109.46930 * 152.56601 * 13 12 2 16 16 C 1.50699 * 109.47280 * 272.56501 * 13 12 2 17 17 C 1.33395 * 125.20078 * 140.00601 * 16 13 12 18 18 C 1.38423 * 114.91799 * 179.97438 * 17 16 13 19 19 C 1.33394 * 114.92144 * 359.97438 * 18 17 16 20 20 S 1.75881 * 109.59449 * 359.75608 * 19 18 17 21 21 H 1.08999 * 109.46703 * 59.14375 * 1 2 3 22 22 H 1.08992 * 109.47324 * 179.14779 * 1 2 3 23 23 H 1.09005 * 109.47307 * 299.14805 * 1 2 3 24 24 H 0.97002 * 120.00313 * 180.02562 * 7 6 4 25 25 H 1.00891 * 110.99563 * 150.10203 * 12 2 1 26 26 H 1.09000 * 109.46939 * 55.57275 * 15 13 12 27 27 H 1.09004 * 109.46957 * 175.56746 * 15 13 12 28 28 H 1.08994 * 109.46919 * 295.57093 * 15 13 12 29 29 H 1.08001 * 122.54280 * 359.97438 * 17 16 13 30 30 H 1.08004 * 122.53829 * 180.02562 * 18 17 16 31 31 H 1.07997 * 125.19968 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8280 -2.5199 -4.0081 10 1 1.8279 -0.4194 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.1037 0.2279 2.3413 14 1 1.3142 0.9754 2.2643 15 6 1.9368 -0.5581 3.6434 16 6 3.4461 0.9128 2.3366 17 6 3.6548 2.1977 2.6281 18 6 4.9760 2.6045 2.5577 19 6 5.8403 1.6500 2.2096 20 16 4.9783 0.1383 1.9544 21 1 -0.3633 0.5271 -0.8822 22 1 -0.3633 -1.0275 -0.0153 23 1 -0.3634 0.5006 0.8976 24 1 0.7090 1.1613 -3.4844 25 1 2.9100 -1.1335 1.0243 26 1 2.6778 -1.3564 3.6834 27 1 2.0774 0.1111 4.4922 28 1 0.9363 -0.9887 3.6820 29 1 2.8536 2.8696 2.8985 30 1 5.2838 3.6179 2.7695 31 1 6.9067 1.7840 2.1043 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871458.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:46:52 Heat of formation + Delta-G solvation = 8.614706 kcal Electronic energy + Delta-G solvation = -13505.027801 eV Core-core repulsion = 11298.063411 eV Total energy + Delta-G solvation = -2206.964390 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.33583 -37.59342 -35.10842 -32.54622 -29.52804 -28.82312 -27.22991 -25.00723 -22.75896 -21.71885 -20.23335 -18.70448 -17.81912 -16.97130 -16.42910 -15.63372 -15.37914 -14.81384 -14.45630 -14.02055 -13.58792 -13.51620 -13.30471 -13.04900 -12.90628 -12.80669 -12.48858 -12.25518 -12.19283 -12.15118 -11.82781 -11.49978 -10.90988 -10.57969 -9.54572 -9.39454 -9.14413 -8.13132 -6.26781 0.13827 0.74400 1.14951 1.41207 1.42939 1.50405 1.88308 2.41078 3.15493 3.60450 3.80799 4.23437 4.38260 4.50982 4.64557 4.70371 4.83147 4.92724 5.04218 5.08351 5.19173 5.22660 5.31816 5.39402 5.51810 5.60377 5.68973 5.86844 6.21123 6.41593 6.72343 6.95811 7.42843 8.92384 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.009000 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.488962 B = 3110.375492 C = 3541.362193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.220 3.780 3 H -0.030 1.030 4 C -0.537 4.537 5 H 0.056 0.944 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.676 5.676 13 C 0.145 3.855 14 H 0.075 0.925 15 C -0.122 4.122 16 C -0.203 4.203 17 C -0.156 4.156 18 C -0.138 4.138 19 C -0.221 4.221 20 S 0.079 5.921 21 H 0.057 0.943 22 H 0.029 0.971 23 H 0.023 0.977 24 H 0.262 0.738 25 H 0.330 0.670 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.145 0.855 30 H 0.164 0.836 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.025 1.490 10.652 12.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.112 3.888 3 H -0.013 1.013 4 C -0.575 4.575 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.306 5.306 13 C 0.033 3.967 14 H 0.093 0.907 15 C -0.180 4.180 16 C -0.322 4.322 17 C -0.187 4.187 18 C -0.169 4.169 19 C -0.356 4.356 20 S 0.342 5.658 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.148 0.852 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.181 0.819 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.748 -0.108 10.272 12.291 hybrid contribution 0.475 1.738 -0.926 2.025 sum 7.223 1.630 9.346 11.923 Atomic orbital electron populations 1.21563 0.97600 0.99036 0.99032 1.18873 0.92594 0.90777 0.86579 1.01283 1.21511 1.31678 1.12611 0.91706 0.92627 1.25683 0.95163 0.95649 1.01883 1.70012 1.37412 1.23945 1.24161 0.85613 0.78751 0.78803 0.78506 1.19526 1.20833 1.19685 1.60927 1.32465 1.31331 1.05901 1.20349 0.89602 0.93443 0.93316 0.90723 1.21704 1.02450 0.99672 0.94169 1.25775 0.99753 0.99059 1.07617 1.20409 0.98516 0.94992 1.04755 1.20418 0.91900 1.01628 1.02929 1.25922 1.04610 0.95464 1.09637 1.84204 0.98717 1.13989 1.68871 0.92441 0.95222 0.95774 0.92859 0.85176 0.92672 0.90976 0.91524 0.83704 0.81881 0.79459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.77 9.18 71.98 0.66 -5.11 16 2 C 0.22 11.45 2.40 44.17 0.11 11.56 16 3 H -0.03 -1.77 7.71 -2.39 -0.02 -1.79 16 4 C -0.54 -30.08 8.59 25.60 0.22 -29.86 16 5 H 0.06 3.07 7.60 -2.91 -0.02 3.05 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -53.43 11.33 21.45 0.24 -53.19 16 8 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 N -0.68 -29.43 6.06 -477.14 -2.89 -32.32 16 13 C 0.15 5.28 2.83 44.17 0.13 5.41 16 14 H 0.07 2.87 7.16 -2.39 -0.02 2.85 16 15 C -0.12 -3.54 9.50 71.98 0.68 -2.85 16 16 C -0.20 -7.02 5.23 24.59 0.13 -6.89 16 17 C -0.16 -4.85 10.04 21.22 0.21 -4.64 16 18 C -0.14 -3.71 10.18 21.22 0.22 -3.50 16 19 C -0.22 -5.91 11.23 66.72 0.75 -5.16 16 20 S 0.08 2.55 22.01 -56.49 -1.24 1.30 16 21 H 0.06 3.18 6.09 -2.39 -0.01 3.17 16 22 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.02 1.07 7.52 -2.38 -0.02 1.06 16 24 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 25 H 0.33 14.38 6.72 -89.70 -0.60 13.77 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 30 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 31 H 0.19 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -61.34 272.60 2.20 -59.15 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.51 Total: 18.68 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 3.55 Total: -39.73 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -2.65 Total: -85.52 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.24 Total: 1.30 kcal Total: -61.34 2.20 -59.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871458.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.761 kcal (2) G-P(sol) polarization free energy of solvation -61.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds