Wall clock time and date at job start Mon Mar 30 2020 20:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47351 * 2 1 4 4 N 1.46497 * 109.47332 * 179.97438 * 3 2 1 5 5 C 1.36941 * 119.99913 * 270.00227 * 4 3 2 6 6 H 1.07996 * 119.99958 * 323.19056 * 5 4 3 7 7 C 1.38811 * 120.00239 * 143.19596 * 5 4 3 8 8 N 1.31618 * 120.00273 * 156.80812 * 7 5 4 9 9 Si 1.86799 * 119.99578 * 336.80975 * 7 5 4 10 10 H 1.48500 * 109.47371 * 95.40260 * 9 7 5 11 11 H 1.48506 * 109.47016 * 215.40573 * 9 7 5 12 12 H 1.48504 * 109.47492 * 335.40082 * 9 7 5 13 13 C 1.46499 * 120.00057 * 89.99977 * 4 3 2 14 14 C 1.50702 * 109.46800 * 89.03804 * 13 4 3 15 15 C 1.38424 * 122.53560 * 85.50801 * 14 13 4 16 16 C 1.33388 * 114.92047 * 179.97438 * 15 14 13 17 17 S 1.75886 * 109.59131 * 359.97438 * 16 15 14 18 18 C 1.33382 * 122.54342 * 265.47851 * 14 13 4 19 19 H 1.08994 * 109.47274 * 300.00384 * 1 2 3 20 20 H 1.09007 * 109.46949 * 60.00052 * 1 2 3 21 21 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47339 * 239.99705 * 2 1 3 23 23 H 1.08998 * 109.46830 * 119.99764 * 2 1 3 24 24 H 1.09004 * 109.47140 * 59.99583 * 3 2 1 25 25 H 1.09003 * 109.47203 * 300.00371 * 3 2 1 26 26 H 0.96996 * 119.99565 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.47117 * 329.04360 * 13 4 3 28 28 H 1.09001 * 109.47016 * 209.03651 * 13 4 3 29 29 H 1.07998 * 122.54305 * 359.70594 * 15 14 13 30 30 H 1.08003 * 125.20635 * 179.97438 * 16 15 14 31 31 H 1.08003 * 125.19963 * 0.05650 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4426 1.1869 6 1 3.8103 2.0031 2.0287 7 6 5.3698 0.7224 1.3073 8 7 6.2524 1.0544 2.2255 9 14 5.7057 -0.7177 0.1661 10 1 6.5283 -0.2584 -0.9818 11 1 6.4374 -1.7764 0.9073 12 1 4.4185 -1.2636 -0.3344 13 6 4.2381 1.4423 -1.2678 14 6 4.4687 2.8629 -1.7148 15 6 5.5463 3.6147 -1.2792 16 6 5.6030 4.8533 -1.7712 17 16 4.2389 5.1230 -2.8483 18 6 3.6505 3.4908 -2.5605 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6767 1.9564 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 7.0771 0.5508 2.3098 27 1 3.6568 0.9135 -2.0233 28 1 5.1978 0.9435 -1.1327 29 1 6.2828 3.2293 -0.5897 30 1 6.3693 5.5794 -1.5432 31 1 2.7623 3.0624 -3.0011 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:47:05 Heat of formation + Delta-G solvation = 32.972256 kcal Electronic energy + Delta-G solvation = -13689.361413 eV Core-core repulsion = 11483.453246 eV Total energy + Delta-G solvation = -2205.908167 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 225.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.52712 -37.32787 -34.56574 -33.13998 -30.76805 -28.04695 -27.35988 -24.29579 -23.40819 -21.64045 -19.88762 -18.86577 -18.22579 -17.06696 -16.25790 -16.08386 -15.56198 -14.85995 -14.50624 -14.19515 -13.98249 -13.73433 -13.54985 -13.21000 -12.87145 -12.77051 -12.41823 -12.26705 -12.15864 -11.90870 -11.70312 -11.44126 -11.35010 -10.62630 -9.60779 -9.14141 -8.78157 -8.18982 -5.53785 0.19633 0.90360 1.13419 1.29076 1.39973 1.50869 1.89596 2.42168 3.10842 3.48897 4.07568 4.25038 4.26975 4.42238 4.47314 4.64747 4.67256 4.76166 4.82618 4.87862 4.95357 5.17145 5.26603 5.27674 5.42549 5.55257 5.59535 5.77085 5.96680 6.19146 6.99643 7.64602 8.06841 9.00919 Molecular weight = 225.09amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.012009 C = 0.008669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.397785 B = 2330.959761 C = 3228.985560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.140 4.140 3 C 0.150 3.850 4 N -0.607 5.607 5 C -0.247 4.247 6 H 0.036 0.964 7 C -0.013 4.013 8 N -0.946 5.946 9 Si 0.930 3.070 10 H -0.277 1.277 11 H -0.311 1.311 12 H -0.252 1.252 13 C 0.185 3.815 14 C -0.120 4.120 15 C -0.134 4.134 16 C -0.219 4.219 17 S 0.108 5.892 18 C -0.210 4.210 19 H 0.052 0.948 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.049 0.951 23 H 0.035 0.965 24 H 0.038 0.962 25 H 0.065 0.935 26 H 0.261 0.739 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.108 0.892 30 H 0.178 0.822 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.340 3.582 -11.830 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.180 4.180 3 C 0.025 3.975 4 N -0.328 5.328 5 C -0.377 4.377 6 H 0.054 0.946 7 C -0.209 4.209 8 N -0.590 5.590 9 Si 0.759 3.241 10 H -0.204 1.204 11 H -0.240 1.240 12 H -0.176 1.176 13 C 0.057 3.943 14 C -0.135 4.135 15 C -0.165 4.165 16 C -0.354 4.354 17 S 0.370 5.630 18 C -0.346 4.346 19 H 0.072 0.928 20 H 0.085 0.915 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.126 0.874 30 H 0.195 0.805 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.720 4.779 -12.620 15.547 hybrid contribution 1.352 -1.936 1.190 2.645 sum -6.367 2.843 -11.430 13.389 Atomic orbital electron populations 1.21651 0.93916 1.01886 1.02144 1.22026 0.96662 0.98865 1.00463 1.21053 0.81776 0.94865 0.99819 1.44241 1.01917 1.85845 1.00833 1.18558 1.05006 1.23224 0.90905 0.94605 1.25921 0.96797 0.99936 0.98278 1.70008 1.08885 1.41110 1.39005 0.86059 0.78500 0.81013 0.78501 1.20414 1.23968 1.17619 1.19999 0.96013 0.90543 0.87718 1.19792 0.95446 1.00452 0.97787 1.20147 0.99970 0.94975 1.01376 1.25759 1.04350 1.00383 1.04941 1.83570 1.20145 1.13150 1.46135 1.25603 1.05370 0.97690 1.05976 0.92845 0.91490 0.92296 0.93174 0.94636 0.94325 0.91680 0.92964 0.90706 0.94282 0.87399 0.80498 0.80139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.91 71.98 0.71 -2.80 16 2 C -0.14 -4.82 6.26 30.59 0.19 -4.63 16 3 C 0.15 5.69 5.67 86.38 0.49 6.18 16 4 N -0.61 -28.14 2.07 -706.33 -1.46 -29.61 16 5 C -0.25 -13.95 9.91 84.03 0.83 -13.11 16 6 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 7 C -0.01 -0.74 5.29 84.86 0.45 -0.29 16 8 N -0.95 -59.03 13.97 21.65 0.30 -58.73 16 9 Si 0.93 45.99 25.07 68.60 1.72 47.71 16 10 H -0.28 -13.18 6.66 99.48 0.66 -12.51 16 11 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 12 H -0.25 -11.76 7.11 99.48 0.71 -11.06 16 13 C 0.18 7.78 4.74 85.63 0.41 8.19 16 14 C -0.12 -4.65 5.38 -20.92 -0.11 -4.77 16 15 C -0.13 -5.41 9.98 21.22 0.21 -5.20 16 16 C -0.22 -7.13 11.23 66.72 0.75 -6.38 16 17 S 0.11 2.94 23.34 -56.49 -1.32 1.62 16 18 C -0.21 -6.51 10.96 66.72 0.73 -5.78 16 19 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 20 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 21 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 24 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 25 H 0.06 2.11 8.07 -2.39 -0.02 2.09 16 26 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.07 2.70 8.03 -2.39 -0.02 2.68 16 28 H 0.04 1.84 3.28 -2.39 -0.01 1.83 16 29 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 30 H 0.18 4.80 8.06 -2.91 -0.02 4.78 16 31 H 0.18 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -64.54 273.34 4.95 -59.59 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.05 Total: 8.02 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 4.66 Total: -28.60 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -1.16 Total: -88.34 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.72 Total: 47.71 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.32 Total: 1.62 kcal Total: -64.54 4.95 -59.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.562 kcal (2) G-P(sol) polarization free energy of solvation -64.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds