Wall clock time and date at job start Mon Mar 30 2020 20:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46897 * 2 1 4 4 C 1.50699 * 109.46669 * 240.00139 * 2 1 3 5 5 H 1.07998 * 120.00415 * 245.34856 * 4 2 1 6 6 C 1.37886 * 120.00247 * 65.36055 * 4 2 1 7 7 N 1.31510 * 120.00252 * 200.03810 * 6 4 2 8 8 Si 1.86803 * 119.99705 * 20.30492 * 6 4 2 9 9 H 1.48503 * 109.46857 * 179.73089 * 8 6 4 10 10 H 1.48497 * 109.47359 * 299.72829 * 8 6 4 11 11 H 1.48496 * 109.47047 * 59.73186 * 8 6 4 12 12 C 1.50698 * 109.47252 * 120.00280 * 2 1 3 13 13 C 1.38235 * 120.00445 * 239.99453 * 12 2 1 14 14 C 1.38217 * 120.01075 * 180.02562 * 13 12 2 15 15 C 1.38265 * 120.02699 * 0.02562 * 14 13 12 16 16 C 1.38188 * 120.01325 * 359.97438 * 15 14 13 17 17 C 1.38328 * 120.00448 * 59.72553 * 12 2 1 18 18 Cl 1.73597 * 120.01550 * 359.97438 * 17 12 2 19 19 H 1.08996 * 109.47340 * 173.39673 * 1 2 3 20 20 H 1.09004 * 109.46898 * 293.39753 * 1 2 3 21 21 H 1.09006 * 109.47229 * 53.39521 * 1 2 3 22 22 H 1.00901 * 111.00105 * 56.04947 * 3 2 1 23 23 H 1.00898 * 110.99554 * 180.02562 * 3 2 1 24 24 H 0.97006 * 119.99444 * 355.22604 * 7 6 4 25 25 H 1.08000 * 119.99589 * 0.02562 * 13 12 2 26 26 H 1.08004 * 119.98682 * 179.97438 * 14 13 12 27 27 H 1.08004 * 119.99086 * 179.97438 * 15 14 13 28 28 H 1.08003 * 120.00654 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5800 -1.6361 -1.1339 6 6 1.7926 -0.1784 -2.4798 7 7 1.8630 -0.9454 -3.5457 8 14 1.3753 1.6336 -2.6590 9 1 1.1708 1.9549 -4.0943 10 1 0.1327 1.9325 -1.9029 11 1 2.4908 2.4538 -2.1222 12 6 2.0324 -0.7105 1.2304 13 6 2.8272 -0.0388 2.1404 14 6 3.2885 -0.6904 3.2686 15 6 2.9557 -2.0145 3.4876 16 6 2.1612 -2.6869 2.5786 17 6 1.6936 -2.0331 1.4522 18 17 0.6891 -2.8750 0.3138 19 1 -0.3634 -1.0208 -0.1182 20 1 -0.3633 0.4081 0.9432 21 1 -0.3634 0.6128 -0.8250 22 1 1.6441 1.9013 0.7814 23 1 3.0282 1.4119 -0.0004 24 1 2.1508 -1.8680 -3.4612 25 1 3.0878 0.9953 1.9697 26 1 3.9098 -0.1654 3.9791 27 1 3.3168 -2.5232 4.3692 28 1 1.9009 -3.7210 2.7500 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238493936.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:17 Heat of formation + Delta-G solvation = 23.271066 kcal Electronic energy + Delta-G solvation = -13747.730803 eV Core-core repulsion = 11403.525160 eV Total energy + Delta-G solvation = -2344.205643 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.24327 -35.75868 -35.63247 -31.96026 -30.40925 -29.61313 -27.97274 -24.65670 -22.55429 -21.98125 -19.32159 -17.22133 -16.76227 -15.08816 -14.85605 -14.75864 -13.96250 -13.40202 -13.31422 -13.09925 -12.55683 -11.89468 -11.74715 -11.54870 -10.96664 -10.83837 -10.53072 -10.43583 -10.05636 -9.83427 -9.38093 -8.83124 -8.46467 -8.13952 -7.90918 -7.58433 -6.32243 -4.00877 1.59321 1.73466 2.90238 3.77046 3.83546 4.07686 4.18319 4.80605 5.15838 5.17042 5.30005 5.36267 5.65387 5.75401 5.82517 6.08388 6.26351 6.49322 6.58040 6.66555 6.72468 6.84826 6.94081 7.18313 7.37021 7.90678 8.09254 8.46588 8.53261 9.03657 9.72413 11.05598 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033046 B = 0.012701 C = 0.010419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.110175 B = 2203.950509 C = 2686.868571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.247 3.753 3 N -0.834 5.834 4 C -0.586 4.586 5 H 0.059 0.941 6 C 0.041 3.959 7 N -0.900 5.900 8 Si 1.119 2.881 9 H -0.335 1.335 10 H -0.292 1.292 11 H -0.293 1.293 12 C -0.052 4.052 13 C -0.132 4.132 14 C -0.119 4.119 15 C -0.136 4.136 16 C -0.118 4.118 17 C -0.024 4.024 18 Cl -0.049 7.049 19 H 0.070 0.930 20 H 0.017 0.983 21 H 0.064 0.936 22 H 0.314 0.686 23 H 0.339 0.661 24 H 0.264 0.736 25 H 0.123 0.877 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 0.020 12.836 12.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.156 3.844 3 N -0.366 5.366 4 C -0.624 4.624 5 H 0.078 0.922 6 C -0.165 4.165 7 N -0.533 5.533 8 Si 0.956 3.044 9 H -0.267 1.267 10 H -0.220 1.220 11 H -0.221 1.221 12 C -0.055 4.055 13 C -0.151 4.151 14 C -0.137 4.137 15 C -0.154 4.154 16 C -0.137 4.137 17 C -0.051 4.051 18 Cl -0.020 7.020 19 H 0.089 0.911 20 H 0.036 0.964 21 H 0.083 0.917 22 H 0.127 0.873 23 H 0.153 0.847 24 H 0.074 0.926 25 H 0.141 0.859 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.546 1.135 10.930 11.002 hybrid contribution 0.976 -1.602 2.102 2.817 sum 0.430 -0.468 13.032 13.048 Atomic orbital electron populations 1.22374 0.96119 1.03025 0.99150 1.18066 0.92335 0.83826 0.90205 1.59205 1.13787 1.15936 1.47682 1.21639 1.42071 1.09004 0.89660 0.92234 1.26041 0.92945 1.05877 0.91678 1.70963 1.41514 1.08556 1.32218 0.82812 0.76921 0.74136 0.70513 1.26704 1.21999 1.22101 1.21230 0.94241 0.93099 0.96905 1.21016 0.99344 1.00261 0.94471 1.21072 1.00084 0.94914 0.97628 1.20876 1.00089 0.94977 0.99463 1.21017 0.98947 0.99892 0.93827 1.20759 0.98575 0.93432 0.92362 1.98347 1.66805 1.76694 1.60146 0.91091 0.96410 0.91737 0.87294 0.84651 0.92627 0.85926 0.86421 0.86169 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.09 37.16 0.30 -3.00 15 2 C 0.25 5.53 0.53 -133.91 -0.07 5.46 15 3 N -0.83 -16.91 4.09 -1.14 0.00 -16.92 15 4 C -0.59 -15.72 6.99 -34.44 -0.24 -15.96 15 5 H 0.06 1.75 7.28 -52.49 -0.38 1.37 15 6 C 0.04 1.17 5.32 -17.82 -0.09 1.07 15 7 N -0.90 -27.68 13.70 55.43 0.76 -26.92 15 8 Si 1.12 28.19 24.74 -169.99 -4.21 23.98 15 9 H -0.33 -8.89 7.11 56.52 0.40 -8.49 15 10 H -0.29 -7.02 5.60 56.52 0.32 -6.70 15 11 H -0.29 -6.99 6.84 56.52 0.39 -6.60 15 12 C -0.05 -1.04 4.74 -104.59 -0.50 -1.54 15 13 C -0.13 -2.24 9.04 -39.59 -0.36 -2.60 15 14 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 15 15 C -0.14 -1.96 10.05 -39.59 -0.40 -2.36 15 16 C -0.12 -1.93 9.83 -39.55 -0.39 -2.32 15 17 C -0.02 -0.47 5.91 -39.50 -0.23 -0.70 15 18 Cl -0.05 -1.01 23.50 -51.86 -1.22 -2.23 15 19 H 0.07 1.59 5.08 -51.93 -0.26 1.33 15 20 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 15 21 H 0.06 1.51 5.04 -51.93 -0.26 1.25 15 22 H 0.31 5.42 8.26 -39.29 -0.32 5.10 15 23 H 0.34 6.63 8.04 -39.29 -0.32 6.31 15 24 H 0.26 8.11 8.73 -40.82 -0.36 7.76 15 25 H 0.12 1.85 6.19 -52.49 -0.33 1.52 15 26 H 0.12 1.36 8.06 -52.48 -0.42 0.94 15 27 H 0.12 1.35 8.06 -52.48 -0.42 0.93 15 28 H 0.12 1.74 8.06 -52.48 -0.42 1.32 15 LS Contribution 237.03 15.07 3.57 3.57 Total: -1.00 -30.36 237.03 -6.29 -36.65 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -2.82 Total: 5.95 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -2.38 Total: -24.09 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.75 Total: -43.83 kcal Atomic # 14 Polarization: 28.19 SS G_CDS: -4.21 Total: 23.98 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.22 Total: -2.23 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.36 -6.29 -36.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238493936.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.920 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds