Wall clock time and date at job start Mon Mar 30 2020 20:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46897 * 2 1 4 4 C 1.50699 * 109.46669 * 240.00139 * 2 1 3 5 5 H 1.07998 * 120.00415 * 245.34856 * 4 2 1 6 6 C 1.37886 * 120.00247 * 65.36055 * 4 2 1 7 7 N 1.31510 * 120.00252 * 200.03810 * 6 4 2 8 8 Si 1.86803 * 119.99705 * 20.30492 * 6 4 2 9 9 H 1.48503 * 109.46857 * 179.73089 * 8 6 4 10 10 H 1.48497 * 109.47359 * 299.72829 * 8 6 4 11 11 H 1.48496 * 109.47047 * 59.73186 * 8 6 4 12 12 C 1.50698 * 109.47252 * 120.00280 * 2 1 3 13 13 C 1.38235 * 120.00445 * 239.99453 * 12 2 1 14 14 C 1.38217 * 120.01075 * 180.02562 * 13 12 2 15 15 C 1.38265 * 120.02699 * 0.02562 * 14 13 12 16 16 C 1.38188 * 120.01325 * 359.97438 * 15 14 13 17 17 C 1.38328 * 120.00448 * 59.72553 * 12 2 1 18 18 Cl 1.73597 * 120.01550 * 359.97438 * 17 12 2 19 19 H 1.08996 * 109.47340 * 173.39673 * 1 2 3 20 20 H 1.09004 * 109.46898 * 293.39753 * 1 2 3 21 21 H 1.09006 * 109.47229 * 53.39521 * 1 2 3 22 22 H 1.00901 * 111.00105 * 56.04947 * 3 2 1 23 23 H 1.00898 * 110.99554 * 180.02562 * 3 2 1 24 24 H 0.97006 * 119.99444 * 355.22604 * 7 6 4 25 25 H 1.08000 * 119.99589 * 0.02562 * 13 12 2 26 26 H 1.08004 * 119.98682 * 179.97438 * 14 13 12 27 27 H 1.08004 * 119.99086 * 179.97438 * 15 14 13 28 28 H 1.08003 * 120.00654 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5800 -1.6361 -1.1339 6 6 1.7926 -0.1784 -2.4798 7 7 1.8630 -0.9454 -3.5457 8 14 1.3753 1.6336 -2.6590 9 1 1.1708 1.9549 -4.0943 10 1 0.1327 1.9325 -1.9029 11 1 2.4908 2.4538 -2.1222 12 6 2.0324 -0.7105 1.2304 13 6 2.8272 -0.0388 2.1404 14 6 3.2885 -0.6904 3.2686 15 6 2.9557 -2.0145 3.4876 16 6 2.1612 -2.6869 2.5786 17 6 1.6936 -2.0331 1.4522 18 17 0.6891 -2.8750 0.3138 19 1 -0.3634 -1.0208 -0.1182 20 1 -0.3633 0.4081 0.9432 21 1 -0.3634 0.6128 -0.8250 22 1 1.6441 1.9013 0.7814 23 1 3.0282 1.4119 -0.0004 24 1 2.1508 -1.8680 -3.4612 25 1 3.0878 0.9953 1.9697 26 1 3.9098 -0.1654 3.9791 27 1 3.3168 -2.5232 4.3692 28 1 1.9009 -3.7210 2.7500 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238493936.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:17 Heat of formation + Delta-G solvation = 2.552973 kcal Electronic energy + Delta-G solvation = -13748.629207 eV Core-core repulsion = 11403.525160 eV Total energy + Delta-G solvation = -2345.104047 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.62864 -37.33772 -37.15791 -34.05440 -31.72975 -31.00493 -29.63013 -26.69104 -24.03838 -23.27218 -21.01566 -19.23577 -18.11345 -16.58077 -16.52372 -16.14688 -15.53062 -15.07894 -14.73783 -14.66828 -14.26456 -13.67631 -13.28104 -13.20636 -12.53457 -12.31412 -12.20993 -12.12065 -11.81315 -11.71699 -11.10250 -10.76843 -10.20891 -9.78250 -9.42743 -9.27659 -8.52233 -6.21570 0.31617 0.44087 1.46765 1.74092 1.82140 2.17752 2.74068 2.79397 3.23861 3.90529 3.97851 4.05431 4.17040 4.51575 4.51910 4.73245 4.84271 4.92280 5.01908 5.14019 5.39984 5.44055 5.51332 5.58765 5.97497 6.05021 6.19523 6.41704 6.84696 6.94150 7.58261 8.81243 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.033046 B = 0.012701 C = 0.010419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.110175 B = 2203.950509 C = 2686.868571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.249 3.751 3 N -0.836 5.836 4 C -0.563 4.563 5 H 0.023 0.977 6 C -0.010 4.010 7 N -0.943 5.943 8 Si 1.155 2.845 9 H -0.359 1.359 10 H -0.274 1.274 11 H -0.269 1.269 12 C -0.086 4.086 13 C -0.135 4.135 14 C -0.110 4.110 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.051 4.051 18 Cl -0.077 7.077 19 H 0.060 0.940 20 H 0.043 0.957 21 H 0.047 0.953 22 H 0.338 0.662 23 H 0.345 0.655 24 H 0.247 0.753 25 H 0.141 0.859 26 H 0.159 0.841 27 H 0.161 0.839 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 1.376 16.259 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 N -0.370 5.370 4 C -0.602 4.602 5 H 0.041 0.959 6 C -0.208 4.208 7 N -0.579 5.579 8 Si 0.989 3.011 9 H -0.294 1.294 10 H -0.201 1.201 11 H -0.195 1.195 12 C -0.089 4.089 13 C -0.153 4.153 14 C -0.128 4.128 15 C -0.141 4.141 16 C -0.143 4.143 17 C -0.078 4.078 18 Cl -0.048 7.048 19 H 0.079 0.921 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.153 0.847 23 H 0.160 0.840 24 H 0.056 0.944 25 H 0.159 0.841 26 H 0.176 0.824 27 H 0.179 0.821 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.329 2.497 14.408 14.627 hybrid contribution 0.774 -2.096 1.238 2.554 sum 1.104 0.401 15.646 15.690 Atomic orbital electron populations 1.22295 0.96191 1.02333 0.99742 1.17725 0.92197 0.84778 0.89594 1.58844 1.14362 1.14736 1.49046 1.21705 1.39496 1.07414 0.91565 0.95896 1.27128 0.93282 1.08449 0.91962 1.71074 1.45276 1.08035 1.33544 0.82334 0.78340 0.71085 0.69387 1.29386 1.20084 1.19507 1.21061 0.96852 0.93625 0.97362 1.21276 0.98355 1.01171 0.94535 1.21552 0.99117 0.95026 0.97089 1.21400 0.97946 0.95014 0.99696 1.21320 0.98950 1.00889 0.93113 1.21055 0.99742 0.93773 0.93264 1.98332 1.67775 1.77217 1.61460 0.92098 0.93833 0.93397 0.84694 0.83987 0.94366 0.84131 0.82361 0.82116 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.41 8.09 71.98 0.58 -5.83 15 2 C 0.25 10.86 0.53 2.03 0.00 10.86 15 3 N -0.84 -31.59 4.09 -157.51 -0.64 -32.23 15 4 C -0.56 -30.74 6.99 25.60 0.18 -30.56 15 5 H 0.02 1.39 7.28 -2.91 -0.02 1.37 15 6 C -0.01 -0.58 5.32 84.66 0.45 -0.13 15 7 N -0.94 -60.49 13.70 21.45 0.29 -60.19 15 8 Si 1.15 57.06 24.74 68.60 1.70 58.76 15 9 H -0.36 -19.14 7.11 99.48 0.71 -18.43 15 10 H -0.27 -12.60 5.60 99.48 0.56 -12.05 15 11 H -0.27 -12.02 6.84 99.48 0.68 -11.34 15 12 C -0.09 -3.31 4.74 -19.84 -0.09 -3.40 15 13 C -0.14 -4.06 9.04 22.26 0.20 -3.86 15 14 C -0.11 -2.63 10.05 22.27 0.22 -2.41 15 15 C -0.12 -2.93 10.05 22.26 0.22 -2.70 15 16 C -0.12 -3.73 9.83 22.29 0.22 -3.51 15 17 C -0.05 -1.95 5.91 22.32 0.13 -1.82 15 18 Cl -0.08 -3.22 23.50 -2.72 -0.06 -3.28 15 19 H 0.06 2.75 5.08 -2.39 -0.01 2.74 15 20 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 21 H 0.05 2.20 5.04 -2.38 -0.01 2.18 15 22 H 0.34 10.36 8.26 -89.69 -0.74 9.62 15 23 H 0.35 12.46 8.04 -89.70 -0.72 11.74 15 24 H 0.25 16.12 8.73 -92.70 -0.81 15.31 15 25 H 0.14 3.60 6.19 -2.91 -0.02 3.58 15 26 H 0.16 2.55 8.06 -2.91 -0.02 2.53 15 27 H 0.16 2.57 8.06 -2.91 -0.02 2.54 15 28 H 0.14 3.61 8.06 -2.91 -0.02 3.59 15 Total: -1.00 -68.23 237.03 2.92 -65.31 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -0.48 Total: 14.99 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 2.12 Total: -43.35 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -0.35 Total: -92.42 kcal Atomic # 14 Polarization: 57.06 SS G_CDS: 1.70 Total: 58.76 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -0.06 Total: -3.28 kcal Total: -68.23 2.92 -65.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238493936.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.864 kcal (2) G-P(sol) polarization free energy of solvation -68.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds