Wall clock time and date at job start Mon Mar 30 2020 20:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47503 * 2 1 4 4 C 1.50705 * 109.47245 * 120.00026 * 2 1 3 5 5 H 1.07997 * 120.00179 * 119.99522 * 4 2 1 6 6 C 1.37882 * 119.99588 * 299.99782 * 4 2 1 7 7 N 1.31519 * 120.00036 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99836 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47270 * 60.00458 * 8 6 4 10 10 H 1.48507 * 109.47141 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47486 * 300.00007 * 8 6 4 12 12 C 1.50705 * 109.47006 * 239.99514 * 2 1 3 13 13 C 1.38126 * 120.02822 * 294.72287 * 12 2 1 14 14 C 1.38239 * 120.09310 * 179.97438 * 13 12 2 15 15 C 1.38434 * 120.13132 * 0.02562 * 14 13 12 16 16 Cl 1.73598 * 119.97483 * 180.02562 * 15 14 13 17 17 C 1.38193 * 120.04924 * 359.97438 * 15 14 13 18 18 C 1.38902 * 120.02066 * 114.70863 * 12 2 1 19 19 N 1.39668 * 120.06811 * 359.97438 * 18 12 2 20 20 H 1.08999 * 109.47365 * 300.00141 * 1 2 3 21 21 H 1.09001 * 109.46905 * 60.00245 * 1 2 3 22 22 H 1.09002 * 109.47503 * 179.97438 * 1 2 3 23 23 H 0.96996 * 119.99756 * 179.97438 * 7 6 4 24 24 H 1.08001 * 119.95559 * 359.70871 * 13 12 2 25 25 H 1.07997 * 119.94057 * 179.97438 * 14 13 12 26 26 H 1.08004 * 120.04612 * 180.02562 * 17 15 14 27 27 H 0.96992 * 120.00435 * 6.31623 * 19 18 12 28 28 H 0.97008 * 119.99964 * 186.32021 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8063 -1.1208 4.0083 10 1 1.8269 -0.4196 5.2205 11 1 1.8258 -2.5200 4.0079 12 6 2.0323 -0.7105 -1.2305 13 6 1.7911 -2.0605 -1.3960 14 6 2.2508 -2.7135 -2.5244 15 6 2.9547 -2.0172 -3.4919 16 17 3.5295 -2.8411 -4.9076 17 6 3.1992 -0.6664 -3.3321 18 6 2.7379 -0.0083 -2.1991 19 7 2.9824 1.3570 -2.0346 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 0.7081 1.1610 3.4843 24 1 1.2464 -2.6076 -0.6407 25 1 2.0612 -3.7691 -2.6511 26 1 3.7479 -0.1232 -4.0871 27 1 2.7410 1.7964 -1.2043 28 1 3.3936 1.8658 -2.7509 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260372291.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:43 Heat of formation + Delta-G solvation = 4.312917 kcal Electronic energy + Delta-G solvation = -13158.634452 eV Core-core repulsion = 10813.606721 eV Total energy + Delta-G solvation = -2345.027730 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.06724 -36.25204 -34.24094 -33.79469 -31.31618 -28.73120 -27.49235 -25.15226 -22.83927 -21.55189 -19.57080 -16.91839 -16.67965 -15.98477 -14.99624 -14.43897 -13.77584 -13.56416 -13.18701 -12.98105 -12.61177 -11.77192 -11.57780 -11.29646 -11.13901 -10.90015 -10.81466 -10.55175 -10.32191 -10.10962 -9.81227 -9.45096 -9.01085 -8.41048 -7.97267 -6.88346 -6.05322 -4.12059 1.91726 2.14195 2.57424 3.29354 3.33936 3.37394 4.35046 4.46466 4.48718 5.25596 5.44701 5.68027 5.86404 6.09384 6.30076 6.44881 6.71640 6.75847 6.86826 7.07682 7.17357 7.19899 7.46609 7.66524 7.84559 8.00613 8.08714 8.31582 8.38248 8.90375 9.53038 10.99760 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039194 B = 0.007418 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.227221 B = 3773.880053 C = 4078.283013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.081 3.919 3 H 0.031 0.969 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C -0.100 4.100 13 C -0.058 4.058 14 C -0.172 4.172 15 C -0.009 4.009 16 Cl -0.099 7.099 17 C -0.200 4.200 18 C 0.217 3.783 19 N -0.876 5.876 20 H 0.085 0.915 21 H 0.007 0.993 22 H 0.029 0.971 23 H 0.261 0.739 24 H 0.131 0.869 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.406 0.594 28 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 -1.977 -9.408 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.063 3.937 3 H 0.049 0.951 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.720 3.280 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.104 4.104 13 C -0.078 4.078 14 C -0.193 4.193 15 C -0.035 4.035 16 Cl -0.071 7.071 17 C -0.223 4.223 18 C 0.112 3.888 19 N -0.418 5.418 20 H 0.103 0.897 21 H 0.026 0.974 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.149 0.851 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.239 0.761 28 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.455 -1.956 -9.374 9.885 hybrid contribution 0.522 -0.167 0.738 0.919 sum 2.977 -2.123 -8.636 9.378 Atomic orbital electron populations 1.21790 0.97588 0.99429 1.00139 1.17683 0.92734 0.94866 0.88427 0.95141 1.21138 1.31149 1.12484 0.89862 0.92388 1.24961 0.94995 0.94999 0.98962 1.69866 1.36598 1.22916 1.23573 0.86644 0.79233 0.79855 0.82225 1.20299 1.21345 1.20177 1.20322 0.98572 0.94412 0.97102 1.20802 0.97576 0.93870 0.95510 1.20738 1.03619 0.99782 0.95148 1.20359 1.01709 0.92329 0.89143 1.98306 1.88301 1.79338 1.41129 1.20179 1.09083 0.93172 0.99917 1.17517 0.93501 0.84902 0.92913 1.42631 1.71456 1.06581 1.21104 0.89664 0.97357 0.95172 0.92889 0.85130 0.86361 0.86364 0.76100 0.78478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.83 37.15 0.33 -2.74 15 2 C 0.08 1.93 2.42 -92.92 -0.23 1.70 15 3 H 0.03 0.75 5.68 -51.93 -0.29 0.45 15 4 C -0.51 -13.29 8.10 -34.44 -0.28 -13.57 15 5 H 0.06 1.53 7.45 -52.49 -0.39 1.14 15 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 15 7 N -0.89 -24.32 11.32 55.43 0.63 -23.69 15 8 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 15 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 12 C -0.10 -2.09 4.77 -104.41 -0.50 -2.59 15 13 C -0.06 -1.15 8.59 -39.62 -0.34 -1.49 15 14 C -0.17 -3.01 9.83 -39.51 -0.39 -3.40 15 15 C -0.01 -0.15 6.32 -39.53 -0.25 -0.39 15 16 Cl -0.10 -1.46 28.95 -51.86 -1.50 -2.96 15 17 C -0.20 -3.40 9.68 -39.35 -0.38 -3.78 15 18 C 0.22 4.03 6.73 -83.79 -0.56 3.47 15 19 N -0.88 -14.06 9.00 32.41 0.29 -13.77 15 20 H 0.08 2.17 6.07 -51.93 -0.32 1.86 15 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 15 22 H 0.03 0.67 7.72 -51.93 -0.40 0.27 15 23 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 24 H 0.13 2.57 7.75 -52.49 -0.41 2.16 15 25 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 26 H 0.12 1.75 8.06 -52.48 -0.42 1.33 15 27 H 0.41 6.92 6.48 -40.82 -0.26 6.65 15 28 H 0.39 4.92 8.85 -40.82 -0.36 4.56 15 LS Contribution 253.27 15.07 3.82 3.82 Total: -1.00 -26.98 253.27 -7.32 -34.30 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -2.84 Total: 7.83 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -2.69 Total: -21.24 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.92 Total: -37.46 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -1.50 Total: -2.96 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.98 -7.32 -34.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372291.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.610 kcal (2) G-P(sol) polarization free energy of solvation -26.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds