Wall clock time and date at job start Mon Mar 30 2020 20:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47503 * 2 1 4 4 C 1.50705 * 109.47245 * 120.00026 * 2 1 3 5 5 H 1.07997 * 120.00179 * 119.99522 * 4 2 1 6 6 C 1.37882 * 119.99588 * 299.99782 * 4 2 1 7 7 N 1.31519 * 120.00036 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99836 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47270 * 60.00458 * 8 6 4 10 10 H 1.48507 * 109.47141 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47486 * 300.00007 * 8 6 4 12 12 C 1.50705 * 109.47006 * 239.99514 * 2 1 3 13 13 C 1.38126 * 120.02822 * 294.72287 * 12 2 1 14 14 C 1.38239 * 120.09310 * 179.97438 * 13 12 2 15 15 C 1.38434 * 120.13132 * 0.02562 * 14 13 12 16 16 Cl 1.73598 * 119.97483 * 180.02562 * 15 14 13 17 17 C 1.38193 * 120.04924 * 359.97438 * 15 14 13 18 18 C 1.38902 * 120.02066 * 114.70863 * 12 2 1 19 19 N 1.39668 * 120.06811 * 359.97438 * 18 12 2 20 20 H 1.08999 * 109.47365 * 300.00141 * 1 2 3 21 21 H 1.09001 * 109.46905 * 60.00245 * 1 2 3 22 22 H 1.09002 * 109.47503 * 179.97438 * 1 2 3 23 23 H 0.96996 * 119.99756 * 179.97438 * 7 6 4 24 24 H 1.08001 * 119.95559 * 359.70871 * 13 12 2 25 25 H 1.07997 * 119.94057 * 179.97438 * 14 13 12 26 26 H 1.08004 * 120.04612 * 180.02562 * 17 15 14 27 27 H 0.96992 * 120.00435 * 6.31623 * 19 18 12 28 28 H 0.97008 * 119.99964 * 186.32021 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8063 -1.1208 4.0083 10 1 1.8269 -0.4196 5.2205 11 1 1.8258 -2.5200 4.0079 12 6 2.0323 -0.7105 -1.2305 13 6 1.7911 -2.0605 -1.3960 14 6 2.2508 -2.7135 -2.5244 15 6 2.9547 -2.0172 -3.4919 16 17 3.5295 -2.8411 -4.9076 17 6 3.1992 -0.6664 -3.3321 18 6 2.7379 -0.0083 -2.1991 19 7 2.9824 1.3570 -2.0346 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 0.7081 1.1610 3.4843 24 1 1.2464 -2.6076 -0.6407 25 1 2.0612 -3.7691 -2.6511 26 1 3.7479 -0.1232 -4.0871 27 1 2.7410 1.7964 -1.2043 28 1 3.3936 1.8658 -2.7509 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260372291.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:43 Heat of formation + Delta-G solvation = -10.428451 kcal Electronic energy + Delta-G solvation = -13159.273686 eV Core-core repulsion = 10813.606721 eV Total energy + Delta-G solvation = -2345.666964 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.062 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.51073 -37.55230 -36.02371 -35.16006 -33.14644 -30.22095 -28.99552 -27.15379 -24.43445 -23.00747 -21.22870 -18.50115 -18.15236 -17.63873 -16.76994 -15.98327 -15.20115 -15.07349 -14.66085 -14.46347 -14.35815 -13.49827 -13.16325 -12.95647 -12.76136 -12.59699 -12.55469 -12.17728 -11.99452 -11.74424 -11.23213 -11.14126 -10.91573 -10.41476 -9.41081 -8.30071 -8.04091 -6.18603 0.48366 0.73396 1.26345 1.44441 1.45125 1.52304 2.45493 2.98619 3.14353 3.24711 4.08446 4.34393 4.36481 4.65648 4.82487 4.91459 5.05462 5.09545 5.31826 5.38984 5.48251 5.55575 5.71648 5.95268 6.07280 6.12048 6.41651 6.66818 6.89112 7.11216 7.48917 8.97118 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.039194 B = 0.007418 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.227221 B = 3773.880053 C = 4078.283013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.083 3.917 3 H 0.018 0.982 4 C -0.519 4.519 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.272 1.272 12 C -0.132 4.132 13 C -0.067 4.067 14 C -0.173 4.173 15 C -0.007 4.007 16 Cl -0.074 7.074 17 C -0.196 4.196 18 C 0.211 3.789 19 N -0.868 5.868 20 H 0.059 0.941 21 H 0.021 0.979 22 H 0.028 0.972 23 H 0.261 0.739 24 H 0.121 0.879 25 H 0.139 0.861 26 H 0.144 0.856 27 H 0.401 0.599 28 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 -2.622 -10.661 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 H 0.036 0.964 4 C -0.557 4.557 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.774 3.226 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.198 1.198 12 C -0.136 4.136 13 C -0.086 4.086 14 C -0.194 4.194 15 C -0.034 4.034 16 Cl -0.045 7.045 17 C -0.219 4.219 18 C 0.105 3.895 19 N -0.410 5.410 20 H 0.078 0.922 21 H 0.040 0.960 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.139 0.861 25 H 0.157 0.843 26 H 0.162 0.838 27 H 0.233 0.767 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.363 -2.592 -10.652 11.467 hybrid contribution 0.276 0.012 1.015 1.052 sum 3.640 -2.580 -9.637 10.619 Atomic orbital electron populations 1.21641 0.97800 0.99080 0.99455 1.17532 0.92601 0.94247 0.89152 0.96426 1.21416 1.30818 1.12287 0.91209 0.93208 1.25622 0.95324 0.95697 1.01450 1.69980 1.37524 1.23971 1.23929 0.85772 0.78639 0.78947 0.79252 1.20116 1.21107 1.19762 1.20141 1.01129 0.95169 0.97195 1.20779 0.98009 0.93577 0.96277 1.20880 1.03309 1.00748 0.94475 1.20512 1.00687 0.92547 0.89701 1.98318 1.87875 1.78825 1.39477 1.20419 1.08508 0.93357 0.99664 1.17613 0.93175 0.85724 0.92941 1.42572 1.71087 1.05928 1.21438 0.92175 0.95996 0.95269 0.93023 0.86130 0.84348 0.83831 0.76723 0.76482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.83 71.98 0.64 -5.13 15 2 C 0.08 3.99 2.42 -12.28 -0.03 3.96 15 3 H 0.02 0.89 5.68 -2.39 -0.01 0.87 15 4 C -0.52 -27.50 8.10 25.60 0.21 -27.29 15 5 H 0.05 2.65 7.45 -2.91 -0.02 2.63 15 6 C 0.02 0.95 5.30 84.66 0.45 1.40 15 7 N -0.91 -50.66 11.32 21.45 0.24 -50.42 15 8 Si 0.95 42.71 29.54 68.60 2.03 44.73 15 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 10 H -0.29 -12.67 7.11 99.48 0.71 -11.96 15 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 12 C -0.13 -5.49 4.77 -19.73 -0.09 -5.58 15 13 C -0.07 -2.61 8.59 22.24 0.19 -2.42 15 14 C -0.17 -5.75 9.83 22.32 0.22 -5.53 15 15 C -0.01 -0.23 6.32 22.31 0.14 -0.09 15 16 Cl -0.07 -1.93 28.95 -2.72 -0.08 -2.01 15 17 C -0.20 -6.14 9.68 22.42 0.22 -5.93 15 18 C 0.21 7.58 6.73 38.21 0.26 7.84 15 19 N -0.87 -26.77 9.00 -51.38 -0.46 -27.23 15 20 H 0.06 3.13 6.07 -2.39 -0.01 3.12 15 21 H 0.02 0.92 8.14 -2.39 -0.02 0.90 15 22 H 0.03 1.32 7.72 -2.39 -0.02 1.30 15 23 H 0.26 13.87 8.31 -92.71 -0.77 13.10 15 24 H 0.12 4.79 7.75 -2.91 -0.02 4.77 15 25 H 0.14 3.94 8.06 -2.91 -0.02 3.91 15 26 H 0.14 3.72 8.06 -2.91 -0.02 3.70 15 27 H 0.40 13.53 6.48 -92.71 -0.60 12.93 15 28 H 0.41 9.45 8.85 -92.70 -0.82 8.63 15 Total: -1.00 -56.33 253.27 3.69 -52.63 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -0.23 Total: 21.06 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 2.19 Total: -38.77 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -0.22 Total: -77.65 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.01 kcal Total: -56.33 3.69 -52.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372291.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.205 kcal (2) G-P(sol) polarization free energy of solvation -56.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds