Wall clock time and date at job start Mon Mar 30 2020 20:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76200 * 99.99882 * 2 1 4 4 N 1.32925 * 118.85762 * 180.02562 * 3 2 1 5 5 C 1.31855 * 121.21621 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.52015 * 179.97438 * 5 4 3 7 7 C 1.40983 * 118.95093 * 0.02562 * 5 4 3 8 8 C 1.40944 * 121.01258 * 179.97438 * 7 5 4 9 9 H 1.07991 * 119.99383 * 316.17954 * 8 7 5 10 10 C 1.39851 * 119.99897 * 135.90421 * 8 7 5 11 11 N 1.30959 * 120.00209 * 343.80453 * 10 8 7 12 12 Si 1.86793 * 119.99532 * 163.80154 * 10 8 7 13 13 H 1.48503 * 109.46941 * 90.00338 * 12 10 8 14 14 H 1.48503 * 109.47185 * 209.99711 * 12 10 8 15 15 H 1.48504 * 109.47776 * 330.00086 * 12 10 8 16 16 C 1.42223 * 117.97361 * 0.24374 * 7 5 4 17 17 N 1.37858 * 120.65440 * 179.73177 * 16 7 5 18 18 N 1.32554 * 118.68982 * 359.47466 * 16 7 5 19 19 H 1.09002 * 109.46935 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.47207 * 299.99530 * 1 2 3 21 21 H 1.08996 * 109.47684 * 59.99875 * 1 2 3 22 22 H 1.08999 * 109.47311 * 270.01983 * 6 5 4 23 23 H 1.09000 * 109.47176 * 30.02849 * 6 5 4 24 24 H 1.09004 * 109.46551 * 150.03019 * 6 5 4 25 25 H 0.96994 * 120.00349 * 185.05371 * 11 10 8 26 26 H 0.97003 * 119.99813 * 351.18749 * 17 16 7 27 27 H 0.96993 * 120.00049 * 171.18909 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 3.3738 2.1649 -0.0005 5 6 3.6559 3.4529 -0.0010 6 6 5.0879 3.9227 -0.0011 7 6 2.5969 4.3835 -0.0005 8 6 2.8488 5.7703 -0.0005 9 1 3.6096 6.1808 0.6468 10 6 2.1176 6.6138 -0.8429 11 7 1.4382 6.1113 -1.8434 12 14 2.1101 8.4571 -0.5409 13 1 3.2267 9.0862 -1.2911 14 1 0.8196 9.0291 -1.0023 15 1 2.2780 8.7218 0.9107 16 6 1.2667 3.8804 0.0059 17 7 0.1897 4.7410 0.0123 18 7 1.0828 2.5677 0.0005 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 5.4331 4.0360 1.0266 23 1 5.7105 3.1903 -0.5149 24 1 5.1556 4.8816 -0.5149 25 1 0.9911 6.7008 -2.4707 26 1 0.3298 5.6922 0.1412 27 1 -0.7080 4.3954 -0.1120 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260379198.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:44:45 Heat of formation + Delta-G solvation = 11.516784 kcal Electronic energy + Delta-G solvation = -13419.063791 eV Core-core repulsion = 11108.684901 eV Total energy + Delta-G solvation = -2310.378890 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 225.063 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.96867 -36.68566 -35.47754 -33.47556 -31.48299 -29.78129 -29.18958 -27.08649 -24.00860 -22.60664 -19.59548 -18.60173 -18.47800 -16.94531 -16.35985 -15.97184 -15.61547 -15.27953 -14.99016 -14.30564 -13.97311 -13.69282 -13.55872 -13.05237 -12.97342 -12.87545 -12.80912 -12.21146 -12.07551 -11.58569 -11.18947 -10.94811 -10.32333 -9.74343 -9.00254 -8.66339 -8.31398 -6.29131 0.56078 0.76175 1.03854 1.44371 1.45912 1.52936 1.57164 2.22687 2.69435 3.14915 3.51583 4.00340 4.37423 4.42591 4.44956 4.76565 4.91548 4.95410 5.02351 5.16214 5.31310 5.41737 5.74656 6.14155 6.32045 6.64612 6.83981 6.94935 7.31656 7.80498 8.35580 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.040930 B = 0.009358 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.935258 B = 2991.366290 C = 3524.855878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.061 6.061 3 C 0.202 3.798 4 N -0.536 5.536 5 C 0.043 3.957 6 C -0.061 4.061 7 C -0.040 4.040 8 C -0.475 4.475 9 H 0.087 0.913 10 C 0.036 3.964 11 N -0.824 5.824 12 Si 0.977 3.023 13 H -0.269 1.269 14 H -0.268 1.268 15 H -0.257 1.257 16 C 0.386 3.614 17 N -0.807 5.807 18 N -0.585 5.585 19 H 0.130 0.870 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.288 0.712 26 H 0.407 0.593 27 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 -0.640 2.210 3.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S 0.169 5.831 3 C -0.172 4.172 4 N -0.257 5.257 5 C -0.101 4.101 6 C -0.118 4.118 7 C -0.052 4.052 8 C -0.508 4.508 9 H 0.105 0.895 10 C -0.178 4.178 11 N -0.452 5.452 12 Si 0.798 3.202 13 H -0.194 1.194 14 H -0.192 1.192 15 H -0.181 1.181 16 C 0.133 3.867 17 N -0.353 5.353 18 N -0.315 5.315 19 H 0.148 0.852 20 H 0.095 0.905 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.240 0.760 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.423 -2.559 2.050 4.077 hybrid contribution -1.016 2.992 -0.231 3.168 sum -3.439 0.433 1.819 3.915 Atomic orbital electron populations 1.23299 0.92602 1.06725 1.05665 1.84743 1.08793 0.95680 1.93918 1.23925 0.86796 0.99094 1.07406 1.67636 1.20980 1.18295 1.18742 1.21998 0.97422 0.87342 1.03363 1.20229 0.88991 1.00756 1.01852 1.18828 0.90863 0.96393 0.99093 1.19191 1.19451 0.90278 1.21879 0.89490 1.26558 0.92569 1.05210 0.93489 1.69944 1.25540 1.39636 1.10030 0.85258 0.78731 0.76326 0.79889 1.19428 1.19232 1.18070 1.19046 0.88750 0.86762 0.92104 1.41501 1.05068 1.08596 1.80130 1.67651 1.35014 1.03102 1.25738 0.85216 0.90512 0.90944 0.91182 0.91958 0.90867 0.90153 0.76010 0.78065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.47 9.60 113.37 1.09 -2.38 15 2 S -0.06 -2.37 22.89 -56.49 -1.29 -3.67 15 3 C 0.20 10.05 7.86 180.28 1.42 11.47 15 4 N -0.54 -27.90 10.30 -182.61 -1.88 -29.78 15 5 C 0.04 2.20 6.89 43.23 0.30 2.49 15 6 C -0.06 -2.54 9.78 71.24 0.70 -1.85 15 7 C -0.04 -2.09 5.30 -20.95 -0.11 -2.20 15 8 C -0.48 -23.11 7.37 23.32 0.17 -22.94 15 9 H 0.09 4.06 7.77 -2.91 -0.02 4.04 15 10 C 0.04 1.61 3.60 85.21 0.31 1.92 15 11 N -0.82 -39.31 11.32 21.82 0.25 -39.06 15 12 Si 0.98 34.13 29.59 68.60 2.03 36.16 15 13 H -0.27 -9.42 7.11 99.48 0.71 -8.72 15 14 H -0.27 -8.94 7.11 99.48 0.71 -8.23 15 15 H -0.26 -8.79 7.11 99.48 0.71 -8.09 15 16 C 0.39 19.51 7.33 134.18 0.98 20.49 15 17 N -0.81 -34.92 7.74 -54.05 -0.42 -35.34 15 18 N -0.59 -29.04 9.10 -192.30 -1.75 -30.79 15 19 H 0.13 2.86 8.14 -2.39 -0.02 2.84 15 20 H 0.08 2.43 8.10 -2.39 -0.02 2.41 15 21 H 0.07 2.36 8.10 -2.40 -0.02 2.34 15 22 H 0.07 2.64 8.14 -2.39 -0.02 2.62 15 23 H 0.06 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.07 3.01 7.19 -2.38 -0.02 3.00 15 25 H 0.29 12.58 8.31 -92.71 -0.77 11.81 15 26 H 0.41 17.20 6.07 -92.71 -0.56 16.63 15 27 H 0.39 14.96 8.95 -92.71 -0.83 14.13 15 Total: -1.00 -59.87 248.91 1.61 -58.26 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -0.18 Total: 37.22 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 4.85 Total: 7.01 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -3.80 Total: -134.98 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.16 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -1.29 Total: -3.67 kcal Total: -59.87 1.61 -58.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379198.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.782 kcal (2) G-P(sol) polarization free energy of solvation -59.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds